Samuel I. Miller - Publications

Affiliations: 
University of Washington, Seattle, Seattle, WA 
Area:
Microbiology Biology

139 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Chaudhary A, Kamischke C, Leite M, Altura MA, Kinman L, Kulasekara H, Blanc MP, Wang G, Terhorst C, Miller SI. β-Barrel outer membrane proteins suppress mTORC2 activation and induce autophagic responses. Science Signaling. 11. PMID 30482849 DOI: 10.1126/scisignal.aat7493  0.52
2018 Christen M, Kamischke C, Kulasekara HD, Olivas KC, Kulasekara BR, Christen B, Kline T, Miller SI. Identification of Small Molecule Modulators of Diguanylate Cyclase by FRET-based High-Throughput-Screening. Chembiochem : a European Journal of Chemical Biology. PMID 30395379 DOI: 10.1002/cbic.201800593  0.56
2016 Brittnacher MJ, Heltshe SL, Hayden HS, Radey MC, Weiss EJ, Damman CJ, Zisman TL, Suskind DL, Miller SI. GUTSS: An Alignment-Free Sequence Comparison Method for Use in Human Intestinal Microbiome and Fecal Microbiota Transplantation Analysis. Plos One. 11: e0158897. PMID 27391011 DOI: 10.1371/journal.pone.0158897  1
2016 Chaudhary A, Leite M, Kulasekara BR, Altura MA, Ogahara C, Weiss E, Fu W, Blanc MP, O'Keeffe M, Terhorst C, Akey JM, Miller SI. Human Diversity in a Cell Surface Receptor that Inhibits Autophagy. Current Biology : Cb. PMID 27345162 DOI: 10.1016/j.cub.2016.05.003  0.52
2016 Miller SI, Chaudhary A. A Cellular GWAS Approach to Define Human Variation in Cellular Pathways Important to Inflammation. Pathogens (Basel, Switzerland). 5. PMID 27128945 DOI: 10.3390/pathogens5020039  0.52
2016 Hocquet D, Petitjean M, Rohmer L, Valot B, Kulasekara HD, Bedel E, Bertrand X, Plésiat P, Köhler T, Pantel A, Jacobs M, Hoffman LR, Miller SI. Pyomelanin-producing Pseudomonas aeruginosa selected during chronic infections have a large chromosomal deletion which confers resistance to pyocins. Environmental Microbiology. PMID 27119970 DOI: 10.1111/1462-2920.13336  1
2016 Hayden HS, Matamouros S, Hager KR, Brittnacher MJ, Rohmer L, Radey MC, Weiss EJ, Kim KB, Jacobs MA, Sims-Day EH, Yue M, Zaidi MB, Schifferli DM, Manning SD, Walson JL, ... Miller SI, et al. Genomic Analysis of Salmonella enterica Serovar Typhimurium Characterizes Strain Diversity for Recent U.S. Salmonellosis Cases and Identifies Mutations Linked to Loss of Fitness under Nitrosative and Oxidative Stress. Mbio. 7. PMID 26956590 DOI: 10.1128/mBio.00154-16  1
2015 Damman CJ, Brittnacher MJ, Westerhoff M, Hayden HS, Radey M, Hager KR, Marquis SR, Miller SI, Zisman TL. Low Level Engraftment and Improvement following a Single Colonoscopic Administration of Fecal Microbiota to Patients with Ulcerative Colitis. Plos One. 10: e0133925. PMID 26288277 DOI: 10.1371/journal.pone.0133925  1
2015 Mills E, Petersen E, Kulasekara BR, Miller SI. A direct screen for c-di-GMP modulators reveals a Salmonella Typhimurium periplasmic ʟ-arginine-sensing pathway. Science Signaling. 8: ra57. PMID 26060330 DOI: 10.1126/scisignal.aaa1796  1
2015 Matamouros S, Hager KR, Miller SI. HAMP Domain Rotation and Tilting Movements Associated with Signal Transduction in the PhoQ Sensor Kinase. Mbio. 6: e00616-15. PMID 26015499 DOI: 10.1128/mBio.00616-15  1
2015 Hicks KG, Delbecq SP, Sancho-Vaello E, Blanc MP, Dove KK, Prost LR, Daley ME, Zeth K, Klevit RE, Miller SI. Acidic pH and divalent cation sensing by PhoQ are dispensable for systemic salmonellae virulence. Elife. 4. PMID 26002083 DOI: 10.7554/eLife.06792  1
2015 Buchko GW, Edwards TE, Hewitt SN, Phan IQ, Van Voorhis WC, Miller SI, Myler PJ. Backbone chemical shift assignments for the sensor domain of the Burkholderia pseudomallei histidine kinase RisS: "missing" resonances at the dimer interface. Biomolecular Nmr Assignments. PMID 25957069 DOI: 10.1007/s12104-015-9614-2  1
2015 Dalebroux ZD, Edrozo MB, Pfuetzner RA, Ressl S, Kulasekara BR, Blanc MP, Miller SI. Delivery of cardiolipins to the Salmonella outer membrane is necessary for survival within host tissues and virulence. Cell Host & Microbe. 17: 441-51. PMID 25856753 DOI: 10.1016/j.chom.2015.03.003  1
2015 LaRock DL, Chaudhary A, Miller SI. Salmonellae interactions with host processes. Nature Reviews. Microbiology. 13: 191-205. PMID 25749450 DOI: 10.1038/nrmicro3420  1
2015 Million-Weaver S, Samadpour AN, Moreno-Habel DA, Nugent P, Brittnacher MJ, Weiss E, Hayden HS, Miller SI, Liachko I, Merrikh H. An underlying mechanism for the increased mutagenesis of lagging-strand genes in Bacillus subtilis. Proceedings of the National Academy of Sciences of the United States of America. 112: E1096-105. PMID 25713353 DOI: 10.1073/pnas.1416651112  1
2015 Suskind DL, Brittnacher MJ, Wahbeh G, Shaffer ML, Hayden HS, Qin X, Singh N, Damman CJ, Hager KR, Nielson H, Miller SI. Fecal microbial transplant effect on clinical outcomes and fecal microbiome in active Crohn's disease. Inflammatory Bowel Diseases. 21: 556-63. PMID 25647155 DOI: 10.1097/MIB.0000000000000307  1
2015 Matamouros S, Miller SI. S. Typhimurium strategies to resist killing by cationic antimicrobial peptides. Biochimica Et Biophysica Acta. PMID 25644871 DOI: 10.1016/j.bbamem.2015.01.013  1
2015 Kolodziejek AM, Miller SI. Salmonella modulation of the phagosome membrane, role of SseJ. Cellular Microbiology. 17: 333-41. PMID 25620407 DOI: 10.1111/cmi.12420  1
2014 Loomis WP, Johnson ML, Brasfield A, Blanc MP, Yi J, Miller SI, Cookson BT, Hajjar AM. Temporal and anatomical host resistance to chronic Salmonella infection is quantitatively dictated by Nramp1 and influenced by host genetic background. Plos One. 9: e111763. PMID 25350459 DOI: 10.1371/journal.pone.0111763  1
2014 Mayer-Hamblett N, Rosenfeld M, Gibson RL, Ramsey BW, Kulasekara HD, Retsch-Bogart GZ, Morgan W, Wolter DJ, Pope CE, Houston LS, Kulasekara BR, Khan U, Burns JL, Miller SI, Hoffman LR. Pseudomonas aeruginosa in vitro phenotypes distinguish cystic fibrosis infection stages and outcomes. American Journal of Respiratory and Critical Care Medicine. 190: 289-97. PMID 24937177 DOI: 10.1164/rccm.201404-0681OC  1
2014 Rohmer L, Jacobs MA, Brittnacher MJ, Fong C, Hayden HS, Hocquet D, Weiss EJ, Radey M, Germani Y, Talukder KA, Hager AJ, Kemner JM, Sims-Day EH, Matamouros S, Hager KR, ... Miller SI, et al. Genomic analysis of the emergence of 20th century epidemic dysentery. Bmc Genomics. 15: 355. PMID 24886041 DOI: 10.1186/1471-2164-15-355  1
2014 Mayer-Hamblett N, Ramsey BW, Kulasekara HD, Wolter DJ, Houston LS, Pope CE, Kulasekara BR, Armbruster CR, Burns JL, Retsch-Bogart G, Rosenfeld M, Gibson RL, Miller SI, Khan U, Hoffman LR. Pseudomonas aeruginosa phenotypes associated with eradication failure in children with cystic fibrosis. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 59: 624-31. PMID 24863401 DOI: 10.1093/cid/ciu385  1
2014 Sun X, Olivier AK, Yi Y, Pope CE, Hayden HS, Liang B, Sui H, Zhou W, Hager KR, Zhang Y, Liu X, Yan Z, Fisher JT, Keiser NW, Song Y, ... ... Miller SI, et al. Gastrointestinal pathology in juvenile and adult CFTR-knockout ferrets. The American Journal of Pathology. 184: 1309-22. PMID 24637292 DOI: 10.1016/j.ajpath.2014.01.035  1
2014 Dalebroux ZD, Miller SI. Salmonellae PhoPQ regulation of the outer membrane to resist innate immunity. Current Opinion in Microbiology. 17: 106-13. PMID 24531506 DOI: 10.1016/j.mib.2013.12.005  1
2014 Dalebroux ZD, Matamouros S, Whittington D, Bishop RE, Miller SI. PhoPQ regulates acidic glycerophospholipid content of the Salmonella Typhimurium outer membrane. Proceedings of the National Academy of Sciences of the United States of America. 111: 1963-8. PMID 24449881 DOI: 10.1073/pnas.1316901111  1
2014 Thaipisuttikul I, Hittle LE, Chandra R, Zangari D, Dixon CL, Garrett TA, Rasko DA, Dasgupta N, Moskowitz SM, Malmström L, Goodlett DR, Miller SI, Bishop RE, Ernst RK. A divergent Pseudomonas aeruginosa palmitoyltransferase essential for cystic fibrosis-specific lipid A. Molecular Microbiology. 91: 158-74. PMID 24283944 DOI: 10.1111/mmi.12451  1
2014 Hoffman LR, Pope CE, Hayden HS, Heltshe S, Levy R, McNamara S, Jacobs MA, Rohmer L, Radey M, Ramsey BW, Brittnacher MJ, Borenstein E, Miller SI. Escherichia coli dysbiosis correlates with gastrointestinal dysfunction in children with cystic fibrosis. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 58: 396-9. PMID 24178246 DOI: 10.1093/cid/cit715  1
2014 Salinas RE, Ogohara C, Thomas MI, Shukla KP, Miller SI, Ko DC. A cellular genome-wide association study reveals human variation in microtubule stability and a role in inflammatory cell death. Molecular Biology of the Cell. 25: 76-86. PMID 24173717 DOI: 10.1091/mbc.E13-06-0294  1
2014 Pegues DA, Miller SI. Salmonella Species Mandell, Douglas, and Bennett's Principles and Practice of Infectious Diseases. 2: 2559-2568. DOI: 10.1016/B978-1-4557-4801-3.00225-3  1
2013 Kulasekara BR, Kamischke C, Kulasekara HD, Christen M, Wiggins PA, Miller SI. c-di-GMP heterogeneity is generated by the chemotaxis machinery to regulate flagellar motility. Elife. 2: e01402. PMID 24347546 DOI: 10.7554/eLife.01402  0.56
2013 Lowery CA, Matamouros S, Niessen S, Zhu J, Scolnick J, Lively JM, Cravatt BF, Miller SI, Kaufmann GF, Janda KD. A chemical biology approach to interrogate quorum-sensing regulated behaviors at the molecular and cellular level. Chemistry & Biology. 20: 903-11. PMID 23890008 DOI: 10.1016/j.chembiol.2013.05.009  1
2013 Salipante SJ, Sengupta DJ, Rosenthal C, Costa G, Spangler J, Sims EH, Jacobs MA, Miller SI, Hoogestraat DR, Cookson BT, McCoy C, Matsen FA, Shendure J, Lee CC, Harkins TT, et al. Rapid 16S rRNA next-generation sequencing of polymicrobial clinical samples for diagnosis of complex bacterial infections. Plos One. 8: e65226. PMID 23734239 DOI: 10.1371/journal.pone.0065226  1
2013 Bergeron JR, Worrall LJ, Sgourakis NG, DiMaio F, Pfuetzner RA, Felise HB, Vuckovic M, Yu AC, Miller SI, Baker D, Strynadka NC. A refined model of the prototypical Salmonella SPI-1 T3SS basal body reveals the molecular basis for its assembly. Plos Pathogens. 9: e1003307. PMID 23633951 DOI: 10.1371/journal.ppat.1003307  1
2012 Spinner JL, Jarrett CO, LaRock DL, Miller SI, Collins CM, Hinnebusch BJ. Yersinia pestis insecticidal-like toxin complex (Tc) family proteins: characterization of expression, subcellular localization, and potential role in infection of the flea vector. Bmc Microbiology. 12: 296. PMID 23249165 DOI: 10.1186/1471-2180-12-296  1
2012 Pultz IS, Christen M, Kulasekara HD, Kennard A, Kulasekara B, Miller SI. The response threshold of Salmonella PilZ domain proteins is determined by their binding affinities for c-di-GMP. Molecular Microbiology. 86: 1424-40. PMID 23163901 DOI: 10.1111/mmi.12066  1
2012 Hajjar AM, Ernst RK, Fortuno ES, Brasfield AS, Yam CS, Newlon LA, Kollmann TR, Miller SI, Wilson CB. Humanized TLR4/MD-2 mice reveal LPS recognition differentially impacts susceptibility to Yersinia pestis and Salmonella enterica. Plos Pathogens. 8: e1002963. PMID 23071439 DOI: 10.1371/journal.ppat.1002963  1
2012 Ko DC, Gamazon ER, Shukla KP, Pfuetzner RA, Whittington D, Holden TD, Brittnacher MJ, Fong C, Radey M, Ogohara C, Stark AL, Akey JM, Dolan ME, Wurfel MM, Miller SI. Functional genetic screen of human diversity reveals that a methionine salvage enzyme regulates inflammatory cell death. Proceedings of the National Academy of Sciences of the United States of America. 109: E2343-52. PMID 22837397 DOI: 10.1073/pnas.1206701109  1
2012 LaRock DL, Brzovic PS, Levin I, Blanc MP, Miller SI. A Salmonella typhimurium-translocated glycerophospholipid:cholesterol acyltransferase promotes virulence by binding to the RhoA protein switch regions. The Journal of Biological Chemistry. 287: 29654-63. PMID 22740689 DOI: 10.1074/jbc.M112.363598  1
2012 Awoniyi M, Miller SI, Wilson CB, Hajjar AM, Smith KD. Homeostatic regulation of Salmonella-induced mucosal inflammation and injury by IL-23. Plos One. 7: e37311. PMID 22624013 DOI: 10.1371/journal.pone.0037311  1
2012 Hayden HS, Lim R, Brittnacher MJ, Sims EH, Ramage ER, Fong C, Wu Z, Crist E, Chang J, Zhou Y, Radey M, Rohmer L, Haugen E, Gillett W, Wuthiekanun V, ... ... Miller SI, et al. Evolution of Burkholderia pseudomallei in recurrent melioidosis. Plos One. 7: e36507. PMID 22615773 DOI: 10.1371/journal.pone.0036507  1
2012 Moskowitz SM, Brannon MK, Dasgupta N, Pier M, Sgambati N, Miller AK, Selgrade SE, Miller SI, Denton M, Conway SP, Johansen HK, Høiby N. PmrB mutations promote polymyxin resistance of Pseudomonas aeruginosa isolated from colistin-treated cystic fibrosis patients. Antimicrobial Agents and Chemotherapy. 56: 1019-30. PMID 22106224 DOI: 10.1128/AAC.05829-11  1
2011 Miller AK, Brannon MK, Stevens L, Johansen HK, Selgrade SE, Miller SI, Høiby N, Moskowitz SM. PhoQ mutations promote lipid A modification and polymyxin resistance of Pseudomonas aeruginosa found in colistin-treated cystic fibrosis patients. Antimicrobial Agents and Chemotherapy. 55: 5761-9. PMID 21968359 DOI: 10.1128/AAC.05391-11  1
2011 Mills E, Pultz IS, Kulasekara HD, Miller SI. The bacterial second messenger c-di-GMP: mechanisms of signalling. Cellular Microbiology. 13: 1122-9. PMID 21707905 DOI: 10.1111/j.1462-5822.2011.01619.x  1
2011 Rohmer L, Hocquet D, Miller SI. Are pathogenic bacteria just looking for food? Metabolism and microbial pathogenesis. Trends in Microbiology. 19: 341-8. PMID 21600774 DOI: 10.1016/j.tim.2011.04.003  1
2010 Miller SI. Host-microbe interaction: Inflammation for growth. Nature. 467: 410-1. PMID 20864991 DOI: 10.1038/467410a  1
2010 Edwards TE, Phan I, Abendroth J, Dieterich SH, Masoudi A, Guo W, Hewitt SN, Kelley A, Leibly D, Brittnacher MJ, Staker BL, Miller SI, Van Voorhis WC, Myler PJ, Stewart LJ. Structure of a Burkholderia pseudomallei trimeric autotransporter adhesin head. Plos One. 5. PMID 20862217 DOI: 10.1371/journal.pone.0012803  1
2010 Sanowar S, Singh P, Pfuetzner RA, André I, Zheng H, Spreter T, Strynadka NC, Gonen T, Baker D, Goodlett DR, Miller SI. Interactions of the transmembrane polymeric rings of the Salmonella enterica serovar Typhimurium type III secretion system. Mbio. 1. PMID 20824104 DOI: 10.1128/mBio.00158-10  1
2010 Vinh DB, Ko DC, Rachubinski RA, Aitchison JD, Miller SI. Expression of the Salmonella spp. virulence factor SifA in yeast alters Rho1 activity on peroxisomes. Molecular Biology of the Cell. 21: 3567-77. PMID 20739463 DOI: 10.1091/mbc.E10-06-0482  1
2010 Farris C, Sanowar S, Bader MW, Pfuetzner R, Miller SI. Antimicrobial peptides activate the Rcs regulon through the outer membrane lipoprotein RcsF. Journal of Bacteriology. 192: 4894-903. PMID 20675476 DOI: 10.1128/JB.00505-10  1
2010 Christen M, Kulasekara HD, Christen B, Kulasekara BR, Hoffman LR, Miller SI. Asymmetrical distribution of the second messenger c-di-GMP upon bacterial cell division. Science (New York, N.Y.). 328: 1295-7. PMID 20522779 DOI: 10.1126/science.1188658  0.56
2010 Felise HB, Miller SI. Prospects for the development and use of gram-negative bacterial virulence protein secretion inhibitors for prophylaxis and treatment of infectious diseases. Critical Reviews in Immunology. 30: 69-77. PMID 20370621  1
2010 Levin I, Eakin C, Blanc MP, Klevit RE, Miller SI, Brzovic PS. Identification of an unconventional E3 binding surface on the UbcH5 ~ Ub conjugate recognized by a pathogenic bacterial E3 ligase. Proceedings of the National Academy of Sciences of the United States of America. 107: 2848-53. PMID 20133640 DOI: 10.1073/pnas.0914821107  1
2010 Hoffman LR, Richardson AR, Houston LS, Kulasekara HD, Martens-Habbena W, Klausen M, Burns JL, Stahl DA, Hassett DJ, Fang FC, Miller SI. Nutrient availability as a mechanism for selection of antibiotic tolerant Pseudomonas aeruginosa within the CF airway. Plos Pathogens. 6: e1000712. PMID 20072604 DOI: 10.1371/journal.ppat.1000712  1
2010 Fong C, Ko DC, Wasnick M, Radey M, Miller SI, Brittnacher M. GWAS analyzer: integrating genotype, phenotype and public annotation data for genome-wide association study analysis. Bioinformatics (Oxford, England). 26: 560-4. PMID 20053839 DOI: 10.1093/bioinformatics/btp714  1
2009 Christen M, Coye LH, Hontz JS, LaRock DL, Pfuetzner RA, Megha, Miller SI. Activation of a bacterial virulence protein by the GTPase RhoA. Science Signaling. 2: ra71. PMID 19887681 DOI: 10.1126/scisignal.2000430  1
2009 Ko DC, Shukla KP, Fong C, Wasnick M, Brittnacher MJ, Wurfel MM, Holden TD, O'Keefe GE, Van Yserloo B, Akey JM, Miller SI. A genome-wide in vitro bacterial-infection screen reveals human variation in the host response associated with inflammatory disease. American Journal of Human Genetics. 85: 214-27. PMID 19664744 DOI: 10.1016/j.ajhg.2009.07.012  1
2009 Panchaud A, Scherl A, Shaffer SA, von Haller PD, Kulasekara HD, Miller SI, Goodlett DR. Precursor acquisition independent from ion count: how to dive deeper into the proteomics ocean. Analytical Chemistry. 81: 6481-8. PMID 19572557 DOI: 10.1021/ac900888s  1
2009 Kulasekara BR, Jacobs M, Zhou Y, Wu Z, Sims E, Saenphimmachak C, Rohmer L, Ritchie JM, Radey M, McKevitt M, Freeman TL, Hayden H, Haugen E, Gillett W, Fong C, ... ... Miller SI, et al. Analysis of the genome of the Escherichia coli O157:H7 2006 spinach-associated outbreak isolate indicates candidate genes that may enhance virulence. Infection and Immunity. 77: 3713-21. PMID 19564389 DOI: 10.1128/IAI.00198-09  1
2009 Spreter T, Yip CK, Sanowar S, André I, Kimbrough TG, Vuckovic M, Pfuetzner RA, Deng W, Yu AC, Finlay BB, Baker D, Miller SI, Strynadka NC. A conserved structural motif mediates formation of the periplasmic rings in the type III secretion system. Nature Structural & Molecular Biology. 16: 468-76. PMID 19396170 DOI: 10.1038/nsmb.1603  1
2009 Kline T, Barry KC, Jackson SR, Felise HB, Nguyen HV, Miller SI. Tethered thiazolidinone dimers as inhibitors of the bacterial type III secretion system. Bioorganic & Medicinal Chemistry Letters. 19: 1340-3. PMID 19195888 DOI: 10.1016/j.bmcl.2009.01.047  1
2009 Hoffman LR, Kulasekara HD, Emerson J, Houston LS, Burns JL, Ramsey BW, Miller SI. Pseudomonas aeruginosa lasR mutants are associated with cystic fibrosis lung disease progression. Journal of Cystic Fibrosis : Official Journal of the European Cystic Fibrosis Society. 8: 66-70. PMID 18974024 DOI: 10.1016/j.jcf.2008.09.006  1
2008 Ohlson MB, Huang Z, Alto NM, Blanc MP, Dixon JE, Chai J, Miller SI. Structure and function of Salmonella SifA indicate that its interactions with SKIP, SseJ, and RhoA family GTPases induce endosomal tubulation. Cell Host & Microbe. 4: 434-46. PMID 18996344 DOI: 10.1016/j.chom.2008.08.012  1
2008 Kline T, Felise HB, Barry KC, Jackson SR, Nguyen HV, Miller SI. Substituted 2-imino-5-arylidenethiazolidin-4-one inhibitors of bacterial type III secretion. Journal of Medicinal Chemistry. 51: 7065-74. PMID 18947223 DOI: 10.1021/jm8004515  1
2008 Singh P, Shaffer SA, Scherl A, Holman C, Pfuetzner RA, Larson Freeman TJ, Miller SI, Hernandez P, Appel RD, Goodlett DR. Characterization of protein cross-links via mass spectrometry and an open-modification search strategy. Analytical Chemistry. 80: 8799-806. PMID 18947195 DOI: 10.1021/ac801646f  1
2008 Felise HB, Nguyen HV, Pfuetzner RA, Barry KC, Jackson SR, Blanc MP, Bronstein PA, Kline T, Miller SI. An inhibitor of gram-negative bacterial virulence protein secretion. Cell Host & Microbe. 4: 325-36. PMID 18854237 DOI: 10.1016/j.chom.2008.08.001  1
2008 Haraga A, West TE, Brittnacher MJ, Skerrett SJ, Miller SI. Burkholderia thailandensis as a model system for the study of the virulence-associated type III secretion system of Burkholderia pseudomallei. Infection and Immunity. 76: 5402-11. PMID 18779342 DOI: 10.1128/IAI.00626-08  1
2008 Prost LR, Daley ME, Bader MW, Klevit RE, Miller SI. The PhoQ histidine kinases of Salmonella and Pseudomonas spp. are structurally and functionally different: Evidence that pH and antimicrobial peptide sensing contribute to mammalian pathogenesis Molecular Microbiology. 69: 503-519. PMID 18532985 DOI: 10.1111/j.1365-2958.2008.06303.x  1
2008 Zarivach R, Deng W, Vuckovic M, Felise HB, Nguyen HV, Miller SI, Finlay BB, Strynadka NC. Structural analysis of the essential self-cleaving type III secretion proteins EscU and SpaS. Nature. 453: 124-7. PMID 18451864 DOI: 10.1038/nature06832  1
2008 Hayden HS, Gillett W, Saenphimmachak C, Lim R, Zhou Y, Jacobs MA, Chang J, Rohmer L, D'Argenio DA, Palmieri A, Levy R, Haugen E, Wong GK, Brittnacher MJ, Burns JL, ... Miller SI, et al. Large-insert genome analysis technology detects structural variation in Pseudomonas aeruginosa clinical strains from cystic fibrosis patients. Genomics. 91: 530-7. PMID 18445516 DOI: 10.1016/j.ygeno.2008.02.005  1
2008 Wasylnka JA, Bakowski MA, Szeto J, Ohlson MB, Trimble WS, Miller SI, Brumell JH. Role for myosin II in regulating positioning of Salmonella-containing vacuoles and intracellular replication. Infection and Immunity. 76: 2722-35. PMID 18411289 DOI: 10.1128/IAI.00152-08  1
2008 Rohmer L, Guina T, Chen J, Gallis B, Taylor GK, Shaffer SA, Miller SI, Brittnacher MJ, Goodlett DR. Determination and comparison of the Francisella tularensis subsp.novicida U112 proteome to other bacterial proteomes. Journal of Proteome Research. 7: 2016-24. PMID 18380474 DOI: 10.1021/pr700760z  1
2008 Scherl A, Shaffer SA, Taylor GK, Kulasekara HD, Miller SI, Goodlett DR. Genome-specific gas-phase fractionation strategy for improved shotgun proteomic profiling of proteotypic peptides. Analytical Chemistry. 80: 1182-91. PMID 18211032 DOI: 10.1021/ac701680f  1
2008 Prost LR, Miller SI. The Salmonellae PhoQ sensor: mechanisms of detection of phagosome signals. Cellular Microbiology. 10: 576-82. PMID 18182085 DOI: 10.1111/j.1462-5822.2007.01111.x  1
2008 Haraga A, Ohlson MB, Miller SI. Salmonellae interplay with host cells. Nature Reviews. Microbiology. 6: 53-66. PMID 18026123 DOI: 10.1038/nrmicro1788  1
2007 Miller SI, Hoffman LR, Sanowar S. Did bacterial sensing of host environments evolve from sensing within microbial communities? Cell Host & Microbe. 1: 85-7. PMID 18005684 DOI: 10.1016/j.chom.2007.04.002  1
2007 Prost LR, Sanowar S, Miller SI. Salmonella sensing of anti-microbial mechanisms to promote survival within macrophages. Immunological Reviews. 219: 55-65. PMID 17850481 DOI: 10.1111/j.1600-065X.2007.00557.x  1
2007 Ernst RK, Moskowitz SM, Emerson JC, Kraig GM, Adams KN, Harvey MD, Ramsey B, Speert DP, Burns JL, Miller SI. Unique lipid a modifications in Pseudomonas aeruginosa isolated from the airways of patients with cystic fibrosis. The Journal of Infectious Diseases. 196: 1088-92. PMID 17763333 DOI: 10.1086/521367  1
2007 Murata T, Tseng W, Guina T, Miller SI, Nikaido H. PhoPQ-mediated regulation produces a more robust permeability barrier in the outer membrane of Salmonella enterica serovar typhimurium Journal of Bacteriology. 189: 7213-7222. PMID 17693506 DOI: 10.1128/JB.00973-07  1
2007 Kulasekara HD, Miller SI. Threonine phosphorylation times bacterial secretion. Nature Cell Biology. 9: 734-6. PMID 17603507 DOI: 10.1038/ncb0707-734  1
2007 Rohmer L, Fong C, Abmayr S, Wasnick M, Larson Freeman TJ, Radey M, Guina T, Svensson K, Hayden HS, Jacobs M, Gallagher LA, Manoil C, Ernst RK, Drees B, Buckley D, ... ... Miller SI, et al. Comparison of Francisella tularensis genomes reveals evolutionary events associated with the emergence of human pathogenic strains. Genome Biology. 8: R102. PMID 17550600 DOI: 10.1186/gb-2007-8-6-r102  1
2007 D'Argenio DA, Wu M, Hoffman LR, Kulasekara HD, Déziel E, Smith EE, Nguyen H, Ernst RK, Larson Freeman TJ, Spencer DH, Brittnacher M, Hayden HS, Selgrade S, Klausen M, Goodlett DR, ... ... Miller SI, et al. Growth phenotypes of Pseudomonas aeruginosa lasR mutants adapted to the airways of cystic fibrosis patients. Molecular Microbiology. 64: 512-33. PMID 17493132 DOI: 10.1111/j.1365-2958.2007.05678.x  1
2007 Prost LR, Daley ME, Le Sage V, Bader MW, Le Moual H, Klevit RE, Miller SI. Activation of the Bacterial Sensor Kinase PhoQ by Acidic pH Molecular Cell. 26: 165-174. PMID 17466620 DOI: 10.1016/j.molcel.2007.03.008  1
2006 Hoffman LR, Déziel E, D'Argenio DA, Lépine F, Emerson J, McNamara S, Gibson RL, Ramsey BW, Miller SI. Selection for Staphylococcus aureus small-colony variants due to growth in the presence of Pseudomonas aeruginosa. Proceedings of the National Academy of Sciences of the United States of America. 103: 19890-5. PMID 17172450 DOI: 10.1073/pnas.0606756104  1
2006 Rohmer L, Brittnacher M, Svensson K, Buckley D, Haugen E, Zhou Y, Chang J, Levy R, Hayden H, Forsman M, Olson M, Johansson A, Kaul R, Miller SI. Potential source of Francisella tularensis live vaccine strain attenuation determined by genome comparison. Infection and Immunity. 74: 6895-906. PMID 17000723 DOI: 10.1128/IAI.01006-06  1
2006 Hager AJ, Bolton DL, Pelletier MR, Brittnacher MJ, Gallagher LA, Kaul R, Skerrett SJ, Miller SI, Guina T. Type IV pili-mediated secretion modulates Francisella virulence. Molecular Microbiology. 62: 227-37. PMID 16987180 DOI: 10.1111/j.1365-2958.2006.05365.x  1
2006 Hajjar AM, Harvey MD, Shaffer SA, Goodlett DR, Sjöstedt A, Edebro H, Forsman M, Byström M, Pelletier M, Wilson CB, Miller SI, Skerrett SJ, Ernst RK. Lack of in vitro and in vivo recognition of Francisella tularensis subspecies lipopolysaccharide by Toll-like receptors. Infection and Immunity. 74: 6730-8. PMID 16982824 DOI: 10.1128/IAI.00934-06  1
2006 Nunn BL, Shaffer SA, Scherl A, Gallis B, Wu M, Miller SI, Goodlett DR. Comparison of a Salmonella typhimurium proteome defined by shotgun proteomics directly on an LTQ-FT and by proteome pre-fractionation on an LCQ-DUO. Briefings in Functional Genomics & Proteomics. 5: 154-68. PMID 16798750 DOI: 10.1093/bfgp/ell024  1
2006 Hoffman LR, Miller SI. The systems biology of infection in animal models bears fruit. Proceedings of the National Academy of Sciences of the United States of America. 103: 9377-8. PMID 16769885 DOI: 10.1073/pnas.0603266103  1
2006 Smith EE, Buckley DG, Wu Z, Saenphimmachak C, Hoffman LR, D'Argenio DA, Miller SI, Ramsey BW, Speert DP, Moskowitz SM, Burns JL, Kaul R, Olson MV. Genetic adaptation by Pseudomonas aeruginosa to the airways of cystic fibrosis patients. Proceedings of the National Academy of Sciences of the United States of America. 103: 8487-92. PMID 16687478 DOI: 10.1073/pnas.0602138103  1
2006 Haraga A, Miller SI. A Salmonella type III secretion effector interacts with the mammalian serine/threonine protein kinase PKN1. Cellular Microbiology. 8: 837-46. PMID 16611232 DOI: 10.1111/j.1462-5822.2005.00670.x  1
2006 Rebeil R, Ernst RK, Jarrett CO, Adams KN, Miller SI, Hinnebusch BJ. Characterization of late acyltransferase genes of Yersinia pestis and their role in temperature-dependent lipid A variation. Journal of Bacteriology. 188: 1381-8. PMID 16452420 DOI: 10.1128/JB.188.4.1381-1388.2006  1
2006 Cho US, Bader MW, Amaya MF, Daley ME, Klevit RE, Miller SI, Xu W. Metal bridges between the PhoQ sensor domain and the membrane regulate transmembrane signaling Journal of Molecular Biology. 356: 1193-1206. PMID 16406409 DOI: 10.1016/j.jmb.2005.12.032  1
2005 Ohlson MB, Fluhr K, Birmingham CL, Brumell JH, Miller SI. SseJ deacylase activity by Salmonella enterica serovar Typhimurium promotes virulence in mice. Infection and Immunity. 73: 6249-59. PMID 16177296 DOI: 10.1128/IAI.73.10.6249-6259.2005  1
2005 Hoffman LR, D'Argenio DA, MacCoss MJ, Zhang Z, Jones RA, Miller SI. Aminoglycoside antibiotics induce bacterial biofilm formation. Nature. 436: 1171-5. PMID 16121184 DOI: 10.1038/nature03912  1
2005 Bader MW, Sanowar S, Daley ME, Schneider AR, Cho U, Xu W, Klevit RE, Le Moual H, Miller SI. Recognition of antimicrobial peptides by a bacterial sensor kinase Cell. 122: 461-472. PMID 16096064 DOI: 10.1016/j.cell.2005.05.030  1
2005 Yip CK, Kimbrough TG, Felise HB, Vuckovic M, Thomas NA, Pfuetzner RA, Frey EA, Finlay BB, Miller SI, Strynadka NC. Structural characterization of the molecular platform for type III secretion system assembly. Nature. 435: 702-7. PMID 15931226 DOI: 10.1038/nature03554  1
2005 Kawasaki K, Ernst RK, Miller SI. Purification and characterization of deacylated and/or palmitoylated lipid A species unique to Salmonella enterica serovar Typhimurium. Journal of Endotoxin Research. 11: 57-61. PMID 15826380 DOI: 10.1179/096805105225006696  1
2005 Tanabe H, Ayabe T, Bainbridge B, Guina T, Ernst RK, Darveau RP, Miller SI, Ouellette AJ. Mouse paneth cell secretory responses to cell surface glycolipids of virulent and attenuated pathogenic bacteria. Infection and Immunity. 73: 2312-20. PMID 15784576 DOI: 10.1128/IAI.73.4.2312-2320.2005  1
2005 Kawasaki K, Ernst RK, Miller SI. Inhibition of Salmonella enterica serovar Typhimurium lipopolysaccharide deacylation by aminoarabinose membrane modification. Journal of Bacteriology. 187: 2448-57. PMID 15774888 DOI: 10.1128/JB.187.7.2448-2457.2005  1
2005 Birmingham CL, Jiang X, Ohlson MB, Miller SI, Brumell JH. Salmonella-induced filament formation is a dynamic phenotype induced by rapidly replicating Salmonella enterica serovar typhimurium in epithelial cells. Infection and Immunity. 73: 1204-8. PMID 15664965 DOI: 10.1128/IAI.73.2.1204-1208.2005  1
2005 Beckmann C, Brittnacher M, Ernst R, Mayer-Hamblett N, Miller SI, Burns JL. Use of phage display to identify potential Pseudomonas aeruginosa gene products relevant to early cystic fibrosis airway infections. Infection and Immunity. 73: 444-52. PMID 15618183 DOI: 10.1128/IAI.73.1.444-452.2005  1
2004 Kawasaki K, Ernst RK, Miller SI. Deacylation and palmitoylation of lipid A by Salmonellae outer membrane enzymes modulate host signaling through Toll-like receptor 4. Journal of Endotoxin Research. 10: 439-44. PMID 15588428 DOI: 10.1179/096805104225006264  1
2004 D'Argenio DA, Miller SI. Cyclic di-GMP as a bacterial second messenger. Microbiology (Reading, England). 150: 2497-502. PMID 15289546 DOI: 10.1099/mic.0.27099-0  1
2004 Rebeil R, Ernst RK, Gowen BB, Miller SI, Hinnebusch BJ. Variation in lipid A structure in the pathogenic yersiniae. Molecular Microbiology. 52: 1363-73. PMID 15165239 DOI: 10.1111/j.1365-2958.2004.04059.x  1
2004 Skerrett SJ, Liggitt HD, Hajjar AM, Ernst RK, Miller SI, Wilson CB. Respiratory epithelial cells regulate lung inflammation in response to inhaled endotoxin. American Journal of Physiology. Lung Cellular and Molecular Physiology. 287: L143-52. PMID 15047567 DOI: 10.1152/ajplung.00030.2004  1
2004 Kawasaki K, Ernst RK, Miller SI. 3-O-deacylation of lipid A by PagL, a PhoP/PhoQ-regulated deacylase of Salmonella typhimurium, modulates signaling through Toll-like receptor 4. The Journal of Biological Chemistry. 279: 20044-8. PMID 15014080 DOI: 10.1074/jbc.M401275200  1
2003 Ernst RK, Hajjar AM, Tsai JH, Moskowitz SM, Wilson CB, Miller SI. Pseudomonas aeruginosa lipid A diversity and its recognition by Toll-like receptor 4. Journal of Endotoxin Research. 9: 395-400. PMID 14733728 DOI: 10.1179/096805103225002764  1
2003 Ernst RK, D'Argenio DA, Ichikawa JK, Bangera MG, Selgrade S, Burns JL, Hiatt P, McCoy K, Brittnacher M, Kas A, Spencer DH, Olson MV, Ramsey BW, Lory S, Miller SI. Genome mosaicism is conserved but not unique in Pseudomonas aeruginosa isolates from the airways of young children with cystic fibrosis. Environmental Microbiology. 5: 1341-9. PMID 14641578 DOI: 10.1111/j.1462-2920.2003.00518.x  1
2003 Miller SI, Bader M, Guina T. Bacterial vesicle formation as a mechanism of protein transfer to animals. Cell. 115: 2-3. PMID 14531993 DOI: 10.1016/S0092-8674(03)00767-0  1
2003 Bader MW, Navarre WW, Shiau W, Nikaido H, Frye JG, McClelland M, Fang FC, Miller SI. Regulation of Salmonella typhimurium virulence gene expression by cationic antimicrobial peptides Molecular Microbiology. 50: 219-230. PMID 14507376 DOI: 10.1046/j.1365-2958.2003.03675.x  1
2003 Haraga A, Miller SI. A Salmonella enterica serovar typhimurium translocated leucine-rich repeat effector protein inhibits NF-kappa B-dependent gene expression. Infection and Immunity. 71: 4052-8. PMID 12819095 DOI: 10.1128/IAI.71.7.4052-4058.2003  1
2003 Miao EA, Brittnacher M, Haraga A, Jeng RL, Welch MD, Miller SI. Salmonella effectors translocated across the vacuolar membrane interact with the actin cytoskeleton. Molecular Microbiology. 48: 401-15. PMID 12675800 DOI: 10.1046/j.1365-2958.2003.t01-1-03456.x  1
2003 Freeman JA, Ohl ME, Miller SI. The Salmonella enterica serovar typhimurium translocated effectors SseJ and SifB are targeted to the Salmonella-containing vacuole. Infection and Immunity. 71: 418-27. PMID 12496192 DOI: 10.1128/IAI.71.1.418-427.2003  1
2002 Brodsky IE, Ernst RK, Miller SI, Falkow S. mig-14 is a Salmonella gene that plays a role in bacterial resistance to antimicrobial peptides. Journal of Bacteriology. 184: 3203-13. PMID 12029036 DOI: 10.1128/JB.184.12.3203-3213.2002  1
2002 Hajjar AM, Ernst RK, Tsai JH, Wilson CB, Miller SI. Human Toll-like receptor 4 recognizes host-specific LPS modifications. Nature Immunology. 3: 354-9. PMID 11912497 DOI: 10.1038/ni777  1
2002 Kimbrough TG, Miller SI. Assembly of the type III secretion needle complex of Salmonella typhimurium Microbes and Infection. 4: 75-82. PMID 11825778 DOI: 10.1016/S1286-4579(01)01512-X  1
2001 Ernst RK, Guina T, Miller SI. Salmonella typhimurium outer membrane remodeling: Role in resistance to host innate immunity Microbes and Infection. 3: 1327-1334. PMID 11755422 DOI: 10.1016/S1286-4579(01)01494-0  1
2001 Lesser CF, Miller SI. Expression of microbial virulence proteins in Saccharomyces cerevisiae models mammalian infection Embo Journal. 20: 1840-1849. PMID 11296218 DOI: 10.1093/emboj/20.8.1840  1
2001 Ohl ME, Miller SI. Salmonella: A model for bacterial pathogenesis Annual Review of Medicine. 52: 259-274. PMID 11160778 DOI: 10.1146/annurev.med.52.1.259  1
2000 Bronstein PA, Miao EA, Miller SI. InvB is a type III secretion chaperone specific for SspA. Journal of Bacteriology. 182: 6638-44. PMID 11073906 DOI: 10.1128/JB.182.23.6638-6644.2000  1
2000 Kimbrough TG, Miller SI. Contribution of Salmonella typhimurium type III secretion components to needle complex formation Proceedings of the National Academy of Sciences of the United States of America. 97: 11008-11013. PMID 10984518  1
2000 Scherer CA, Cooper E, Miller SI. The Salmonella type III secretion translocon protein SspC is inserted into the epithelial cell plasma membrane upon infection. Molecular Microbiology. 37: 1133-45. PMID 10972831 DOI: 10.1046/j.1365-2958.2000.02066.x  1
2000 Miao EA, Miller SI. A conserved amino acid sequence directing intracellular type III secretion by Salmonella typhimurium Proceedings of the National Academy of Sciences of the United States of America. 97: 7539-7544. PMID 10861017 DOI: 10.1073/pnas.97.13.7539  1
2000 Ernst RK, Miller SI. Peptides, Pseudomonas aeruginosa, polysaccharides and lipopolysaccharides - Players in the predicament of cystic fibrosis patients: Response Trends in Microbiology. 8: 250-251. DOI: 10.1016/S0966-842X(00)01744-3  1
1999 Miao EA, Miller SI. Bacteriophages in the evolution of pathogen-host interactions Proceedings of the National Academy of Sciences of the United States of America. 96: 9452-9454. PMID 10449711 DOI: 10.1073/pnas.96.17.9452  1
1999 Rakeman JL, Miller SI. Salmonella typhimurium recognition of intestinal environments. Trends in Microbiology. 7: 221-3. PMID 10366856 DOI: 10.1016/S0966-842X(99)01514-0  1
1999 Rakeman JL, Bonifield HR, Miller SI. A HilA-independent pathway to Salmonella typhimurium invasion gene transcription. Journal of Bacteriology. 181: 3096-104. PMID 10322010  1
1999 Ernst RK, Guina T, Miller SI. How intracellular bacteria survive: Surface modifications that promote resistance to host innate immune responses Journal of Infectious Diseases. 179. PMID 10081503  1
1996 Gunn JS, Miller SI. PhoP-PhoQ activates transcription of pmrAB, encoding a two-component regulatory system involved in Salmonella typhimurium antimicrobial peptide resistance Journal of Bacteriology. 178: 6857-6864. PMID 8955307  1
1995 Pegues DA, Hantman MJ, Behlau I, Miller SI. PhoP/PhoQ transcriptional repression of Salmonella typhimurium invasion genes: Evidence for a role in protein secretion Molecular Microbiology. 17: 169-181. PMID 7476203 DOI: 10.1111/j.1365-2958.1995.mmi_17010169.x  1
1994 Belden WJ, Miller SI. Further characterization of the PhoP regulon: Identification of new PhoP- activated virulence loci Infection and Immunity. 62: 5095-5101. PMID 7927792  1
1994 Pegues DA, Miller SI. Salmonellosis, including typhoid fever Current Opinion in Infectious Diseases. 7: 616-623. DOI: 10.1097/00001432-199410000-00016  1
1993 Behlau I, Miller SI. A PhoP-repressed gene promotes Salmonella typhimurium invasion of epithelial cells Journal of Bacteriology. 175: 4475-4484. PMID 8392513  1
1991 Pulkkinen WS, Miller SI. A Salmonella typhimurium virulence protein is similar to a Yersinia enterocolitica invasion protein and a bacteriophage lambda outer membrane protein Journal of Bacteriology. 173: 86-93. PMID 1846140  1
1991 Miller SI. PhoP/PhoQ: Macrophage-specific modulators of Salmonella virulence? Molecular Microbiology. 5: 2073-2078. PMID 1766380  1
1990 Miller SI, Mekalanos JJ. Constitutive expression of the phoP regulon attenuates Salmonella virulence and survival within microphages Journal of Bacteriology. 172: 2485-2490. PMID 2185222  1
1990 Miller SI, Mekalanos JJ, Pulkkinen WS. Salmonella vaccines with mutations in the phoP Virulence regulon Research in Microbiology. 141: 817-821. PMID 2101471 DOI: 10.1016/0923-2508(90)90115-7  1
1989 Miller SI, Mekalanos JJ. Strategies for the development of vaccines for typhoid fever, shigellosis, and cholera Annals of the New York Academy of Sciences. 569: 145-154. PMID 2698084  1
1988 Miller SI, Wirth DF. trans splicing in Leishmania enriettii and identification of ribonucleoprotein complexes containing the spliced leader and U2 equivalent RNAs Molecular and Cellular Biology. 8: 2597-2603. PMID 3405214  1
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