Jennifer L. Macalady, Ph.D. - Publications

Affiliations: 
2000 University of California, Davis, Davis, CA 
Area:
Biogeochemistry, Soil Science Agriculture, Microbiology Biology

57 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Cron B, Macalady JL, Cosmidis J. Organic Stabilization of Extracellular Elemental Sulfur in a -Rich Biofilm: A New Role for Extracellular Polymeric Substances? Frontiers in Microbiology. 12: 720101. PMID 34421879 DOI: 10.3389/fmicb.2021.720101  0.36
2020 Ayala-Muñoz D, Simister RL, Crowe SA, Macalady JL, Burgos WD. Functional redundancy imparts process stability to acidic Fe(II)-oxidizing microbial reactors. Environmental Microbiology. PMID 32996242 DOI: 10.1111/1462-2920.15259  1
2020 Ayala-Muñoz D, Burgos WD, Sánchez-España J, Couradeau E, Falagán C, Macalady JL. Metagenomic and Metatranscriptomic Study of Microbial Metal Resistance in an Acidic Pit Lake. Microorganisms. 8. PMID 32899650 DOI: 10.3390/microorganisms8091350  1
2020 Klatt JM, Gomez-Saez GV, Meyer S, Ristova PP, Yilmaz P, Granitsiotis MS, Macalady JL, Lavik G, Polerecky L, Bühring SI. Versatile cyanobacteria control the timing and extent of sulfide production in a Proterozoic analog microbial mat. The Isme Journal. PMID 32770117 DOI: 10.1038/S41396-020-0734-Z  1
2020 Amend JP, Aronson HS, Macalady J, LaRowe DE. Another chemolithotrophic metabolism missing in nature: sulfur comproportionation. Environmental Microbiology. PMID 32157786 DOI: 10.1111/1462-2920.14982  0.01
2019 Cron B, Henri P, Chan CS, Macalady JL, Cosmidis J. Elemental Sulfur Formation by Is Mediated by Extracellular Organic Compounds. Frontiers in Microbiology. 10: 2710. PMID 31827465 DOI: 10.3389/Fmicb.2019.02710  0.52
2018 Nguyen UT, Lincoln SA, Valladares Juárez AG, Schedler M, Macalady JL, Müller R, Freeman KH. The influence of pressure on crude oil biodegradation in shallow and deep Gulf of Mexico sediments. Plos One. 13: e0199784. PMID 29969471 DOI: 10.1371/Journal.Pone.0199784  1
2018 Haas S, de Beer D, Klatt JM, Fink A, Rench RM, Hamilton TL, Meyer V, Kakuk B, Macalady JL. Low-Light Anoxygenic Photosynthesis and Fe-S-Biogeochemistry in a Microbial Mat. Frontiers in Microbiology. 9: 858. PMID 29755448 DOI: 10.3389/Fmicb.2018.00858  1
2018 Hamilton TL, Klatt JM, de Beer D, Macalady JL. Cyanobacterial photosynthesis under sulfidic conditions: insights from the isolate Leptolyngbya sp. strain hensonii. The Isme Journal. PMID 29328062 DOI: 10.1038/Ismej.2017.193  1
2017 Mansor M, Harouaka K, Gonzales MS, Macalady JL, Fantle MS. Transport-Induced Spatial Patterns of Sulfur Isotopes (δ34S) as Biosignatures. Astrobiology. PMID 29227145 DOI: 10.1089/Ast.2017.1650  1
2017 Hamilton TL, Welander PV, Albrecht HL, Fulton JM, Schaperdoth I, Bird LR, Summons RE, Freeman KH, Macalady JL. Microbial communities and organic biomarkers in a Proterozoic-analog sinkhole. Geobiology. 15: 784-797. PMID 29035021 DOI: 10.1111/Gbi.12252  1
2017 Grettenberger CL, Pearce AR, Bibby KJ, Jones DS, Burgos WD, Macalady JL. Efficient low-pH iron removal by a microbial iron oxide mound ecosystem at Scalp Level Run. Applied and Environmental Microbiology. PMID 28087535 DOI: 10.1128/Aem.00015-17  1
2016 de Beer D, Weber M, Chennu A, Hamilton T, Lott C, Macalady J, Klatt J. Oxygenic and anoxygenic photosynthesis in a microbial mat from an anoxic and sulfidic spring. Environmental Microbiology. PMID 28035767 DOI: 10.1111/1462-2920.13654  1
2016 Hamilton TL, Bovee RJ, Sattin SR, Mohr W, Gilhooly WP, Lyons TW, Pearson A, Macalady JL. Carbon and Sulfur Cycling below the Chemocline in a Meromictic Lake and the Identification of a Novel Taxonomic Lineage in the FCB Superphylum, Candidatus Aegiribacteria. Frontiers in Microbiology. 7: 598. PMID 27199928 DOI: 10.3389/Fmicb.2016.00598  1
2016 Jones DS, Schaperdoth I, Macalady JL. Biogeography of sulfur-oxidizing Acidithiobacillus populations in extremely acidic cave biofilms. The Isme Journal. PMID 27187796 DOI: 10.1038/Ismej.2016.74  1
2016 Mansor M, Macalady JL. Draft Genome Sequence of Lampenflora Chlorobium limicola Strain Frasassi in a Sulfidic Cave System. Genome Announcements. 4. PMID 27174272 DOI: 10.1128/Genomea.00357-16  1
2016 Sheng Y, Bibby K, Grettenberger C, Kaley B, Macalady JL, Wang G, Burgos WD. Geochemical and temporal influences on the enrichment of acidophilic iron-oxidizing bacterial communities. Applied and Environmental Microbiology. PMID 27084004 DOI: 10.1128/Aem.00917-16  1
2016 Harouaka K, Mansor M, Macalady JL, Fantle MS. Calcium isotopic fractionation in microbially mediated gypsum precipitates Geochimica Et Cosmochimica Acta. 184: 114-131. DOI: 10.1016/J.Gca.2016.03.003  1
2016 Zerkle AL, Jones DS, Farquhar J, Macalady JL. Sulfur isotope values in the sulfidic Frasassi cave system, central Italy: A case study of a chemolithotrophic S-based ecosystem Geochimica Et Cosmochimica Acta. 173: 373-386. DOI: 10.1016/J.Gca.2015.10.028  1
2015 Hamilton TL, Bryant DA, Macalady JL. The role of biology in planetary evolution: cyanobacterial primary production in low oxygen Proterozoic oceans. Environmental Microbiology. PMID 26549614 DOI: 10.1111/1462-2920.13118  1
2015 Klatt JM, Meyer S, Häusler S, Macalady JL, de Beer D, Polerecky L. Structure and function of natural sulphide-oxidizing microbial mats under dynamic input of light and chemical energy. The Isme Journal. PMID 26405833 DOI: 10.1038/Ismej.2015.167  1
2015 Mansor M, Hamilton TL, Fantle MS, Macalady JL. Metabolic diversity and ecological niches of Achromatium populations revealed with single-cell genomic sequencing. Frontiers in Microbiology. 6: 822. PMID 26322031 DOI: 10.3389/Fmicb.2015.00822  1
2015 Lincoln SA, Hamilton TL, Valladares Juárez AG, Schedler M, Macalady JL, Müller R, Freeman KH. Draft Genome Sequence of the Piezotolerant and Crude Oil-Degrading Bacterium Rhodococcus qingshengii Strain TUHH-12. Genome Announcements. 3. PMID 25858843 DOI: 10.1128/Genomea.00268-15  1
2015 Jones DS, Kohl C, Grettenberger C, Larson LN, Burgos WD, Macaladya JL. Geochemical niches of iron-oxidizing acidophiles in acidic coal mine drainage. Applied and Environmental Microbiology. 81: 1242-50. PMID 25501473 DOI: 10.1128/Aem.02919-14  1
2015 Jones DS, Polerecky L, Galdenzi S, Dempsey BA, Macalady JL. Fate of sulfide in the Frasassi cave system and implications for sulfuric acid speleogenesis Chemical Geology. 410: 21-27. DOI: 10.1016/J.Chemgeo.2015.06.002  1
2014 Hamilton TL, Jones DS, Schaperdoth I, Macalady JL. Metagenomic insights into S(0) precipitation in a terrestrial subsurface lithoautotrophic ecosystem. Frontiers in Microbiology. 5: 756. PMID 25620962 DOI: 10.3389/Fmicb.2014.00756  1
2014 Hamilton TL, Bovee RJ, Thiel V, Sattin SR, Mohr W, Schaperdoth I, Vogl K, Gilhooly WP, Lyons TW, Tomsho LP, Schuster SC, Overmann J, Bryant DA, Pearson A, Macalady JL. Coupled reductive and oxidative sulfur cycling in the phototrophic plate of a meromictic lake. Geobiology. 12: 451-68. PMID 24976102 DOI: 10.1111/Gbi.12092  1
2014 Jones DS, Schaperdoth I, Macalady JL. Metagenomic Evidence for Sulfide Oxidation in Extremely Acidic Cave Biofilms Geomicrobiology Journal. 31: 194-204. DOI: 10.1080/01490451.2013.834008  1
2013 Macalady JL, Hamilton TL, Grettenberger CL, Jones DS, Tsao LE, Burgos WD. Energy, ecology and the distribution of microbial life. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 368: 20120383. PMID 23754819 DOI: 10.1098/Rstb.2012.0383  1
2013 Dawson KS, Schaperdoth I, Freeman KH, Macalady JL. Anaerobic biodegradation of the isoprenoid biomarkers pristane and phytane Organic Geochemistry. 65: 118-126. DOI: 10.1016/J.Orggeochem.2013.10.010  1
2013 Larson LN, Fitzgerald M, Singha K, Gooseff MN, Macalady JL, Burgos W. Hydrogeochemical niches associated with hyporheic exchange beneath an acid mine drainage-contaminated stream Journal of Hydrology. 501: 163-174. DOI: 10.1016/J.Jhydrol.2013.08.007  1
2012 Maresca JA, Crowe SA, Macalady JL. Anaerobic photosynthetic ecosystems Geobiology. 10: 193-195. PMID 22486919 DOI: 10.1111/J.1472-4669.2012.00327.X  1
2012 Dawson KS, Strąpoć D, Huizinga B, Lidstrom U, Ashby M, Macalady JL. Quantitative fluorescence in situ hybridization analysis of microbial consortia from a biogenic gas field in Alaska's Cook Inlet basin. Applied and Environmental Microbiology. 78: 3599-605. PMID 22427501 DOI: 10.1128/Aem.07122-11  1
2012 Jones DS, Albrecht HL, Dawson KS, Schaperdoth I, Freeman KH, Pi Y, Pearson A, Macalady JL. Community genomic analysis of an extremely acidophilic sulfur-oxidizing biofilm. The Isme Journal. 6: 158-70. PMID 21716305 DOI: 10.1038/Ismej.2011.75  1
2012 Dawson KS, Freeman KH, Macalady JL. Molecular characterization of core lipids from halophilic archaea grown under different salinity conditions Organic Geochemistry. 48: 1-8. DOI: 10.1016/J.Orggeochem.2012.04.003  1
2011 Meyer KM, Macalady JL, Fulton JM, Kump LR, Schaperdoth I, Freeman KH. Carotenoid biomarkers as an imperfect reflection of the anoxygenic phototrophic community in meromictic Fayetteville Green Lake. Geobiology. 9: 321-9. PMID 21682840 DOI: 10.1111/J.1472-4669.2011.00285.X  1
2011 Brown JF, Jones DS, Mills DB, Macalady JL, Burgos WD. Application of a depositional facies model to an acid mine drainage site. Applied and Environmental Microbiology. 77: 545-54. PMID 21097582 DOI: 10.1128/Aem.01550-10  1
2011 Strapoć D, Mastalerz M, Dawson K, MacAlady J, Callaghan AV, Wawrik B, Turich C, Ashby M. Biogeochemistry of microbial coal-bed methane Annual Review of Earth and Planetary Sciences. 39: 617-656. DOI: 10.1146/Annurev-Earth-040610-133343  1
2011 Gonzalez BC, Iliffe TM, Macalady JL, Schaperdoth I, Kakuk B. Microbial hotspots in anchialine blue holes: Initial discoveries from the Bahamas Hydrobiologia. 677: 149-156. DOI: 10.1007/S10750-011-0932-9  1
2010 Jones DS, Tobler DJ, Schaperdoth I, Mainiero M, Macalady JL. Community structure of subsurface biofilms in the thermal sulfidic caves of Acquasanta Terme, Italy Applied and Environmental Microbiology. 76: 5902-5910. PMID 20639361 DOI: 10.1128/Aem.00647-10  1
2010 Moore J, Macalady JL, Schulz MS, White AF, Brantley SL. Shifting microbial community structure across a marine terrace grassland chronosequence, Santa Cruz, California Soil Biology and Biochemistry. 42: 21-31. DOI: 10.1016/J.Soilbio.2009.09.015  1
2009 Dattagupta S, Schaperdoth I, Montanari A, Mariani S, Kita N, Valley JW, Macalady JL. A novel symbiosis between chemoautotrophic bacteria and a freshwater cave amphipod. The Isme Journal. 3: 935-43. PMID 19360027 DOI: 10.1038/Ismej.2009.34  1
2008 Macalady JL, Dattagupta S, Schaperdoth I, Jones DS, Druschel GK, Eastman D. Niche differentiation among sulfur-oxidizing bacterial populations in cave waters. The Isme Journal. 2: 590-601. PMID 18356823 DOI: 10.1038/Ismej.2008.25  1
2008 Strapoc D, Picardal FW, Turich C, Schaperdoth I, Macalady JL, Lipp JS, Lin YS, Ertefai TF, Schubotz F, Hinrichs KU, Mastalerz M, Schimmelmann A. Methane-producing microbial community in a coal bed of the Illinois basin. Applied and Environmental Microbiology. 74: 2424-32. PMID 18310416 DOI: 10.1128/Aem.02341-07  1
2008 Stra̧poć D, Picardal FW, Turich C, Schaperdoth I, Macalady JL, Lipp JS, Lin YS, Ertefai TF, Schubotz F, Hinrichs KU, Mastalerz M, Schimmelmann A. Methane-producing microbial community in a coal bed of the Illinois basin (Applied and Environmental Microbiology (2008) 74, 8, (2424-2432)) Applied and Environmental Microbiology. 74: 3918. DOI: 10.1128/Aem.00856-08  1
2008 Ewing SA, Macalady JL, Warren-Rhodes K, McKay CP, Amundson R. Changes in the soil C cycle at the arid-hyperarid transition in the Atacama Desert Journal of Geophysical Research: Biogeosciences. 113. DOI: 10.1029/2007Jg000495  1
2008 Jones DS, Lyon EH, Macalady JL. Geomicrobiology of biovermiculations from the Frasassi cave system, Italy Journal of Cave and Karst Studies. 70: 78-93.  1
2007 Macalady JL, Jones DS, Lyon EH. Extremely acidic, pendulous cave wall biofilms from the Frasassi cave system, Italy. Environmental Microbiology. 9: 1402-14. PMID 17504478 DOI: 10.1111/J.1462-2920.2007.01256.X  1
2007 Ewing SA, Southard RJ, Macalady JL, Hartshorn AS, Johnson MJ. Soil microbial fingerprints, carbon, and nitrogen in a Mojave Desert creosote-bush ecosystem Soil Science Society of America Journal. 71: 469-475. DOI: 10.2136/Sssaj2005.0283  1
2007 Ewing SA, Michalski G, Thiemens M, Quinn RC, Macalady JL, Kohl S, Wankel SD, Kendall C, Mckay CP, Amundson R. Rainfall limit of the N cycle on Earth Global Biogeochemical Cycles. 21. DOI: 10.1029/2006Gb002838  1
2006 Macalady JL, Lyon EH, Koffman B, Albertson LK, Meyer K, Galdenzi S, Mariani S. Dominant microbial populations in limestone-corroding stream biofilms, Frasassi cave system, Italy. Applied and Environmental Microbiology. 72: 5596-609. PMID 16885314 DOI: 10.1128/Aem.00715-06  1
2004 Macalady JL, Vestling MM, Baumler D, Boekelheide N, Kaspar CW, Banfield JF. Tetraether-linked membrane monolayers in Ferroplasma spp: a key to survival in acid. Extremophiles : Life Under Extreme Conditions. 8: 411-9. PMID 15258835 DOI: 10.1007/S00792-004-0404-5  1
2002 Costello AM, Auman AJ, Macalady JL, Scow KM, Lidstrom ME. Estimation of methanotroph abundance in a freshwater lake sediment. Environmental Microbiology. 4: 443-50. PMID 12153585 DOI: 10.1046/J.1462-2920.2002.00318.X  1
2002 Macalady JL, McMillan AM, Dickens AF, Tyler SC, Scow KM. Population dynamics of type I and II methanotrophic bacteria in rice soils. Environmental Microbiology. 4: 148-57. PMID 12000315 DOI: 10.1046/J.1462-2920.2002.00278.X  1
2000 Macalady JL, Mack EE, Nelson DC, Scow KM. Sediment microbial community structure and mercury methylation in mercury-polluted Clear Lake, California. Applied and Environmental Microbiology. 66: 1479-88. PMID 10742230 DOI: 10.1128/Aem.66.4.1479-1488.2000  1
1999 Hanson JR, Macalady JL, Harris D, Scow KM. Linking toluene degradation with specific microbial populations in soil. Applied and Environmental Microbiology. 65: 5403-8. PMID 10583996 DOI: 10.1128/Aem.65.12.5403-5408.1999  1
1998 Macalady JL, Fuller ME, Scow KM. Effects of metam sodium fumigation on soil microbial activity and community structure Journal of Environmental Quality. 27: 54-63. DOI: 10.2134/Jeq1998.00472425002700010009X  1
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