Shobhana S. Gupta, Ph.D. - Related publications

2009 Vanderbilt University, Nashville, TN 
Microbiology Biology
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Poon GMK. The Non-continuum Nature of Eukaryotic Transcriptional Regulation. Advances in Experimental Medicine and Biology. PMID 33616894 DOI: 10.1007/5584_2021_618   
2021 Jia T, Li F, Liu S, Dou J, Huang T. DnaJ Proteins Regulate Expression in Shoot Apical Meristem of Arabidopsis. Plants (Basel, Switzerland). 10. PMID 33445404 DOI: 10.3390/plants10010136   
2021 Kumar P, Sahoo DK, Sharma D. The identification of novel promoters and terminators for protein expression and metabolic engineering applications in . Metabolic Engineering Communications. 12: e00160. PMID 33489753 DOI: 10.1016/j.mec.2020.e00160   
2021 Crump NT, Ballabio E, Godfrey L, Thorne R, Repapi E, Kerry J, Tapia M, Hua P, Lagerholm C, Filippakopoulos P, Davies JOJ, Milne TA. BET inhibition disrupts transcription but retains enhancer-promoter contact. Nature Communications. 12: 223. PMID 33431820 DOI: 10.1038/s41467-020-20400-z   
2021 Cheng M, Pei D, He X, Liu Y, Zhu P, Yan X. Hydrolytic dehalogenation operon of 4-chlorobenzoate is transcriptionally regulated by the TetR-type repressor FcbR and its ligand 4-chlorobenzoyl-CoA. Applied and Environmental Microbiology. PMID 33397703 DOI: 10.1128/AEM.02652-20   
2021 Loh JT, Shum MV, Jossart SDR, Campbell AM, Sawhney N, McDonald WH, Scholz MB, McClain MS, Forsyth MH, Cover TL. Delineation of the pH-responsive regulon controlled by the ArsRS two- component system. Infection and Immunity. PMID 33526561 DOI: 10.1128/IAI.00597-20   
2021 Li CX, Liao LS, Wan XD, Zhang FF, Zhang T, Luo XM, Zhao S, Feng JX. PoxCbh, a novel CENPB-type HTH domain protein, regulates cellulase and xylanase gene expression in Penicillium oxalicum. Molecular Microbiology. PMID 33561892 DOI: 10.1111/mmi.14696   
2021 Xiong YJ, Liu DY, Shen RR, Xiong Y. A short deletion in the DNA binding domain of STAT3 suppresses growth and progression of colon cancer cells. Aging. 12. PMID 33535185 DOI: 10.18632/aging.202439   
2021 Du Z, Deng S, Wu Z, Wang C. Genome-wide analysis of haloacid dehalogenase genes reveals their function in phosphate starvation responses in rice. Plos One. 16: e0245600. PMID 33481906 DOI: 10.1371/journal.pone.0245600   
2021 Li S, Liu G, Pu L, Liu X, Wang Z, Zhao Q, Chen H, Ge F, Liu D. WRKY transcription factors actively respond to in Wilson. Phytopathology. PMID 33576690 DOI: 10.1094/PHYTO-10-20-0480-R   
2021 Lin Y, Zhao H, Kotlarz M, Jiang J. Enhancer-mediated reporter gene expression in Arabidopsis thaliana: a forward genetic screen. The Plant Journal : For Cell and Molecular Biology. PMID 33547831 DOI: 10.1111/tpj.15189   
2021 Ke Z, Zhou Y, Jiang W, Zhang M, Wang H, Ren Y, Qiu J, Cheng M, Hong Q. McbG, a LysR family transcriptional regulator activates the gene cluster involved in the upstream pathway of carbaryl degradation in sp. XWY-1. Applied and Environmental Microbiology. PMID 33579686 DOI: 10.1128/AEM.02970-20   
2021 Ma S, Jiang L, Wang J, Liu X, Li W, Ma S, Feng L. Downregulation of a novel flagellar synthesis regulator AsiR promotes intracellular replication and systemic pathogenicity of typhimurium. Virulence. 12: 298-311. PMID 33410728 DOI: 10.1080/21505594.2020.1870331   
2021 Zhao X, Luo T, Huang S, Peng N, Yin Y, Luo Z, Zhang Y. A novel transcription factor negatively regulates antioxidant response, cell wall integrity and virulence in the fungal insect pathogen, Beauveria bassiana. Environmental Microbiology. PMID 33432709 DOI: 10.1111/1462-2920.15397   
2021 Chen B, Sun D, Qin X, Gao XH. Screening and identification of potential biomarkers and therapeutic drugs in melanoma via integrated bioinformatics analysis. Investigational New Drugs. PMID 33501609 DOI: 10.1007/s10637-021-01072-y   
2021 Aamir M, Karmakar P, Singh VK, Kashyap SP, Pandey S, Singh BK, Singh PM, Singh J. A novel insight into transcriptional and epigenetic regulation underlying sex expression and flower development in melon (Cucumis melo L.). Physiologia Plantarum. PMID 33547804 DOI: 10.1111/ppl.13357   
2021 Han Z, Yu R, Xiong D, Tian C. A Sge1 homolog in Cytospora chrysosperma governs conidiation, virulence and the expression of putative effectors. Gene. 145474. PMID 33549711 DOI: 10.1016/j.gene.2021.145474   
2021 Yong X, Zheng T, Zhuo X, Ahmad S, Li L, Li P, Yu J, Wang J, Cheng T, Zhang Q. Genome-wide identification, characterisation, and evolution of subfamily in nine Rosaceae species and expression analysis in mei (). Peerj. 9: e10785. PMID 33604183 DOI: 10.7717/peerj.10785   
2021 Liu C, Ye X, Zou L, Xiang D, Wu Q, Wan Y, Wu X, Zhao G. Genome-wide identification of genes involved in heterotrimeric G-protein signaling in Tartary buckwheat (Fagopyrum tataricum) and their potential roles in regulating fruit development. International Journal of Biological Macromolecules. PMID 33434548 DOI: 10.1016/j.ijbiomac.2021.01.016   
2021 Wang T, Tague N, Whelan SA, Dunlop MJ. Programmable gene regulation for metabolic engineering using decoy transcription factor binding sites. Nucleic Acids Research. 49: 1163-1172. PMID 33367820 DOI: 10.1093/nar/gkaa1234   
2021 Xu G, Lyu H, Yi Y, Peng Y, Feng Q, Song Q, Gong C, Peng X, Palli SR, Zheng S. Intragenic DNA methylation regulates insect gene expression and reproduction through the MBD/Tip60 complex. Iscience. 24: 102040. PMID 33521602 DOI: 10.1016/j.isci.2021.102040   
2021 Trouillon J, Ragno M, Simon V, Attrée I, Elsen S. Transcription Inhibitors with XRE DNA-Binding and Cupin Signal-Sensing Domains Drive Metabolic Diversification in . Msystems. 6. PMID 33436508 DOI: 10.1128/mSystems.00753-20   
2021 Ali I, Li C, Li L, Kuang M, Shafiq M, Wang Y, Yang M, Wang G. Effect of acetate, β-hydroxybutyrate and their interaction on lipogenic gene expression, triglyceride contents and lipid droplet formation in dairy cow mammary epithelial cells. In Vitro Cellular & Developmental Biology. Animal. PMID 33403623 DOI: 10.1007/s11626-020-00538-2   
2021 Ma Y, Tian H, Lin R, Wang W, Zhang N, Hussain S, Yang W, Zhang C, Zhou G, Wang T, Wang S. AITRL, an evolutionarily conserved plant specific transcription repressor regulates ABA response in Arabidopsis. Scientific Reports. 11: 721. PMID 33436924 DOI: 10.1038/s41598-020-80695-2   
2021 Kielkopf CL, Bauer W, Urbatsch IL. Expression of Cloned Genes in Using the Methanol-Inducible Promoter . Cold Spring Harbor Protocols. 2021: pdb.prot102160. PMID 33397779 DOI: 10.1101/pdb.prot102160   
2021 Zhang J, Jiao Y, Sharma A, Shen D, Wei B, Hong C, Zheng B, Pan C. Transcriptomic analysis reveals potential pathways associated with salt resistance in pecan (Carya illinoensis K. Koch). Journal of Biotechnology. PMID 33607173 DOI: 10.1016/j.jbiotec.2021.02.001   
2021 Niu M, Yan H, Xiong Y, Zhang Y, Zhang X, Li Y, da Silva JAT, Ma G. Cloning, characterization, and functional analysis of acetyl-CoA C-acetyltransferase and 3-hydroxy-3-methylglutaryl-CoA synthase genes in Santalum album. Scientific Reports. 11: 1082. PMID 33441887 DOI: 10.1038/s41598-020-80268-3   
2021 Spivack K, Muzzelo C, Hall M, Neely C, Slepian H, Cunningham A, Tucker M, Elmer J. Enhancement of transgene expression by the β-catenin inhibitor iCRT14. Plasmid. 102556. PMID 33472046 DOI: 10.1016/j.plasmid.2021.102556   
2021 Thakur V, Bains S, Kaur R, Singh K. Identification and characterization of SlbHLH, SlDof and SlWRKY transcription factors interacting with SlDPD gene involved in costunolide biosynthesis in Saussurea lappa. International Journal of Biological Macromolecules. PMID 33482203 DOI: 10.1016/j.ijbiomac.2021.01.114   
2021 Goh YJ, Barrangou R, Klaenhammer TR. Transcriptome of Lactobacillus acidophilus and Colonization Impact on Murine Host Intestinal Gene Expression. Mbio. 12. PMID 33500337 DOI: 10.1128/mBio.03399-20   
2021 Zhong X, Lundberg M, Råberg L. Divergence in coding sequence and expression of different functional categories of immune genes between two wild rodent species. Genome Biology and Evolution. PMID 33565592 DOI: 10.1093/gbe/evab023   
2021 Wang Y, Zhai Z, Sun Y, Feng C, Peng X, Zhang X, Xiao Y, Zhou X, Wang W, Jiao J, Li T. Genome-Wide Identification of the - Genes that Respond to Multiple Ripening Related Signals in Sweet Cherry Fruit. International Journal of Molecular Sciences. 22. PMID 33562756 DOI: 10.3390/ijms22041622   
2021 Li L, Yang X, Hong R, Liu F. Combined proteomics and transcriptomics analysis of Lactococcus lactis under different culture conditions. Journal of Dairy Science. PMID 33455780 DOI: 10.3168/jds.2020-18895   
2021 Chandra S, Ehrlich KC, Lacey M, Baribault C, Ehrlich M. Epigenetics and expression of key genes associated with cardiac fibrosis: and . Epigenomics. PMID 33538177 DOI: 10.2217/epi-2020-0446   
2021 Hancock SJ, Phan MD, Roberts L, Vu TNM, Harris PNA, Beatson SA, Schembri MA. Characterisation of DtrJ as an IncC plasmid conjugative DNA transfer component. Molecular Microbiology. PMID 33567150 DOI: 10.1111/mmi.14697   
2021 Rajasheker G, Kumar SA, Reddy PS, Edupuganti S, Kummari D, Palakolanu SR, Naravula J, Jawahar G, Qureshi IA, Marka N, Polavarapu R, Kishor PBK. Overexpression of RNA-binding bacterial chaperones in rice lead to stay-green phenotype, improved yield and tolerance to salt and drought stresses. Physiologia Plantarum. PMID 33583030 DOI: 10.1111/ppl.13369   
2021 Jana T, Brodsky S, Barkai N. Speed-Specificity Trade-Offs in the Transcription Factors Search for Their Genomic Binding Sites. Trends in Genetics : Tig. PMID 33414013 DOI: 10.1016/j.tig.2020.12.001   
2021 Tokizawa M, Enomoto T, Ito H, Wu L, Kobayashi Y, Mora-Macías J, Armenta-Medina D, Iuchi S, Kobayashi M, Nomoto M, Tada Y, Fujita M, Shinozaki K, Yamamoto YY, Kochian LV, et al. High affinity promoter binding of STOP1 is essential for the early aluminum-inducible expression of novel Al resistance genes GDH1 and GDH2 in Arabidopsis. Journal of Experimental Botany. PMID 33481007 DOI: 10.1093/jxb/erab031   
2021 Chen HQ, Chen DJ, Li Y, Han F, Jiang X, Cao J, Liu JY, Liu WB. DNA methylation and hydroxymethylation associated with gene expression regulatory network during 3-methylcholanthrene induced lung cell malignant transformation. The Science of the Total Environment. 771: 144839. PMID 33545462 DOI: 10.1016/j.scitotenv.2020.144839   
2021 Yu TC, Liu WL, Brinck MS, Davis JE, Shek J, Bower G, Einav T, Insigne KD, Phillips R, Kosuri S, Urtecho G. Multiplexed characterization of rationally designed promoter architectures deconstructs combinatorial logic for IPTG-inducible systems. Nature Communications. 12: 325. PMID 33436562 DOI: 10.1038/s41467-020-20094-3   
2021 Yu TC, Liu WL, Brinck MS, Davis JE, Shek J, Bower G, Einav T, Insigne KD, Phillips R, Kosuri S, Urtecho G. Multiplexed characterization of rationally designed promoter architectures deconstructs combinatorial logic for IPTG-inducible systems. Nature Communications. 12: 325. PMID 33436562 DOI: 10.1038/s41467-020-20094-3   
2021 Ma B, Ning YN, Li CX, Tian D, Guo H, Pang XM, Luo XM, Zhao S, Feng JX. A mitogen-activated protein kinase PoxMK1 mediates regulation of the production of plant-biomass-degrading enzymes, vegetative growth, and pigment biosynthesis in Penicillium oxalicum. Applied Microbiology and Biotechnology. PMID 33409610 DOI: 10.1007/s00253-020-11020-0   
2021 Li L, He Y, Zhang Z, Shi Y, Zhang X, Xu X, Wu JL, Tang S. OsNAC109 regulates senescence, growth and development by altering the expression of senescence- and phytohormone-associated genes in rice. Plant Molecular Biology. PMID 33543390 DOI: 10.1007/s11103-021-01118-y   
2021 Hasan MS, Singh V, Islam S, Islam MS, Ahsan R, Kaundal A, Islam T, Ghosh A. Genome-wide identification and expression profiling of glutathione S-transferase family under multiple abiotic and biotic stresses in Medicago truncatula L. Plos One. 16: e0247170. PMID 33606812 DOI: 10.1371/journal.pone.0247170   
2021 Yoon CK, Kang D, Kim MK, Seok YJ. Vibrio cholerae FruR facilitates binding of RNA polymerase to the fru promoter in the presence of fructose 1-phosphate. Nucleic Acids Research. PMID 33476373 DOI: 10.1093/nar/gkab013   
2021 Kumar G, Yadav SK, Sarma BK. Characterization of () homologue gene in WSP-V2 and its regulation by the biocontrol agent OKC. 3 Biotech. 11: 19. PMID 33442517 DOI: 10.1007/s13205-020-02560-3   
2021 Dufresne K, Daigle F. Identification of Crp as a novel regulator of the Std fimbrial expression in . Microbiology (Reading, England). PMID 33475482 DOI: 10.1099/mic.0.001022   
2021 Pang Y, Zhang X, Yuan J, Zhang X, Xiang J, Li F. Characterization and Expression Analysis of Insulin Growth Factor Binding Proteins (IGFBPs) in Pacific White Shrimp . International Journal of Molecular Sciences. 22. PMID 33494370 DOI: 10.3390/ijms22031056   
2021 Wolański M, Krawiec M, Schwarz PN, Stegmann E, Wohlleben W, Buchmann A, Gross H, Eitel M, Koch P, Botas A, Méndez C, Núñez LE, Morís F, Cortés J, Zakrzewska-Czerwińska J. A novel LysR-type regulator negatively affects biosynthesis of the immunosuppressant brasilicardin. Engineering in Life Sciences. 21: 4-18. PMID 33531886 DOI: 10.1002/elsc.202000038   
2021 Edogbanya J, Tejada-Martinez D, Jones NJ, Jaiswal A, Bell S, Cordeiro R, van Dam S, Rigden DJ, de Magalhães JP. Evolution, structure and emerging roles of C1ORF112 in DNA replication, DNA damage responses, and cancer. Cellular and Molecular Life Sciences : Cmls. PMID 33625522 DOI: 10.1007/s00018-021-03789-8