Shin-Han Shiu, Ph.D. - Publications

Affiliations: 
2001 University of Wisconsin, Madison, Madison, WI 
Area:
Botany Biology, Molecular Biology

123 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Uygun S, Azodi CB, Shiu SH. Cis-regulatory code for predicting plant cell-type transcriptional response to high salinity. Plant Physiology. PMID 31551359 DOI: 10.1104/pp.19.00653  0.68
2019 Lloyd JP, Bowman MJ, Azodi CB, Sowers RP, Moghe GD, Childs KL, Shiu SH. Evolutionary characteristics of intergenic transcribed regions indicate rare novel genes and widespread noisy transcription in the Poaceae. Scientific Reports. 9: 12122. PMID 31431676 DOI: 10.1038/s41598-019-47797-y  1
2019 Chang YM, Lin HH, Liu WY, Yu CP, Chen HJ, Wartini PP, Kao YY, Wu YH, Lin JJ, Lu MJ, Tu SL, Wu SH, Shiu SH, Ku MSB, Li WH. Comparative transcriptomics method to infer gene coexpression networks and its applications to maize and rice leaf transcriptomes. Proceedings of the National Academy of Sciences of the United States of America. PMID 30718437 DOI: 10.1073/pnas.1817621116  0.4
2019 Moore BM, Wang P, Fan P, Leong B, Schenck CA, Lloyd JP, Lehti-Shiu MD, Last RL, Pichersky E, Shiu SH. Robust predictions of specialized metabolism genes through machine learning. Proceedings of the National Academy of Sciences of the United States of America. PMID 30674669 DOI: 10.1073/pnas.1817074116  0.68
2018 Wang P, Moore BM, Panchy NL, Meng F, Lehti-Shiu MD, Shiu SH. Factors influencing gene family size variation among related species in a plant family, Solanaceae. Genome Biology and Evolution. PMID 30239695 DOI: 10.1093/gbe/evy193  0.56
2018 Liu MJ, Sugimoto K, Uygun S, Panchy N, Campbell MS, Yandell M, Howe GA, Shiu SH. Regulatory Divergence in Wound-Responsive Gene Expression between Domesticated and Wild Tomato. The Plant Cell. PMID 29743197 DOI: 10.1105/tpc.18.00194  0.68
2018 Lloyd JP, Tsai ZT, Sowers RP, Panchy NL, Shiu SH. A model-based approach for identifying functional intergenic transcribed regions and non-coding RNAs. Molecular Biology and Evolution. PMID 29554332 DOI: 10.1093/molbev/msy035  0.56
2017 Tsai CH, Uygun S, Roston R, Shiu SH, Benning C. Recovery from N Deprivation Is a Transcriptionally and Functionally Distinct State in Chlamydomonas. Plant Physiology. PMID 29288234 DOI: 10.1104/pp.17.01546  0.68
2017 Huang CF, Yu CP, Wu YH, Lu MJ, Tu SL, Wu SH, Shiu SH, Ku MSB, Li WH. Elevated auxin biosynthesis and transport underlie high vein density in C4 leaves. Proceedings of the National Academy of Sciences of the United States of America. PMID 28761000 DOI: 10.1073/pnas.1709171114  0.4
2017 Vieler A, Wu G, Tsai CH, Bullard B, Cornish AJ, Harvey C, Reca IB, Thornburg C, Achawanantakun R, Buehl CJ, Campbell MS, Cavalier D, Childs KL, Clark TJ, Deshpande R, ... ... Shiu SH, et al. Correction: Genome, Functional Gene Annotation, and Nuclear Transformation of the Heterokont Oleaginous Alga Nannochloropsis oceanica CCMP1779. Plos Genetics. 13: e1006802. PMID 28542203 DOI: 10.1371/journal.pgen.1006802  0.68
2017 Tsai ZT, Lloyd JP, Shiu SH. Defining Functional Genic Regions in the Human Genome through Integration of Biochemical, Evolutionary, and Genetic Evidence. Molecular Biology and Evolution. PMID 28398576 DOI: 10.1093/molbev/msx101  0.56
2017 Uygun S, Seddon AE, Azodi CB, Shiu SH. Predictive models of spatial transcriptional response to high salinity. Plant Physiology. PMID 28373393 DOI: 10.1104/pp.16.01828  0.68
2016 Uygun S, Peng C, Lehti-Shiu MD, Last RL, Shiu SH. Utility and Limitations of Using Gene Expression Data to Identify Functional Associations. Plos Computational Biology. 12: e1005244. PMID 27935950 DOI: 10.1371/journal.pcbi.1005244  0.68
2016 Lehti-Shiu M, Panchy N, Wang P, Uygun S, Shiu SH. Diversity, expansion, and evolutionary novelty of plant DNA-binding transcription factor families. Biochimica Et Biophysica Acta. PMID 27522016 DOI: 10.1016/j.bbagrm.2016.08.005  0.68
2016 Panchy N, Lehti-Shiu MD, Shiu SH. Gene Duplicates: from origins to implications for plant evolution. Plant Physiology. PMID 27288366 DOI: 10.1104/pp.16.00523  1
2016 Kang H, Zhu D, Lin R, Opiyo SO, Jiang N, Shiu SH, Wang GL. A novel method for identifying polymorphic transposable elements via scanning of high-throughput short reads. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. PMID 27098848 DOI: 10.1093/dnares/dsw011  1
2015 Liu T, Newton L, Liu MJ, Shiu SH, Farre EM. A G-box-like motif is necessary for transcriptional regulation by circadian pseudo-response regulators in Arabidopsis. Plant Physiology. PMID 26586835 DOI: 10.1104/pp.15.01562  1
2015 Tsai ZT, Shiu SH, Tsai HK. Contribution of Sequence Motif, Chromatin State, and DNA Structure Features to Predictive Models of Transcription Factor Binding in Yeast. Plos Computational Biology. 11: e1004418. PMID 26291518 DOI: 10.1371/journal.pcbi.1004418  1
2015 Lloyd JP, Seddon AE, Moghe GD, Simenc MC, Shiu SH. Characteristics of Plant Essential Genes Allow for within- and between-Species Prediction of Lethal Mutant Phenotypes. The Plant Cell. 27: 2133-47. PMID 26286535 DOI: 10.1105/tpc.15.00051  0.64
2015 Poliner E, Panchy N, Newton L, Wu G, Lapinsky A, Bullard B, Zienkiewicz A, Benning C, Shiu SH, Farré EM. Transcriptional coordination of physiological responses in Nannochloropsis oceanica CCMP1779 under light/dark cycles. The Plant Journal : For Cell and Molecular Biology. 83: 1097-113. PMID 26216534 DOI: 10.1111/tpj.12944  1
2015 Lehti-Shiu MD, Uygun S, Moghe G, Panchy N, Fang L, Hufnagel DE, Jasicki HL, Feig M, Shiu SH. Molecular evidence for functional divergence and decay of a transcription factor derived from whole genome duplication in Arabidopsis thaliana. Plant Physiology. PMID 26103993 DOI: 10.1104/pp.15.00689  1
2015 Liu MJ, Seddon AE, Tsai ZT, Major IT, Floer M, Howe GA, Shiu SH. Determinants of nucleosome positioning and their influence on plant gene expression. Genome Research. 25: 1182-95. PMID 26063739 DOI: 10.1101/gr.188680.114  1
2015 Peng C, Uygun S, Shiu SH, Last RL. The Impact of the Branched-Chain Ketoacid Dehydrogenase Complex on Amino Acid Homeostasis in Arabidopsis. Plant Physiology. PMID 25986129 DOI: 10.1104/pp.15.00461  1
2015 Yu CP, Chen SC, Chang YM, Liu WY, Lin HH, Lin JJ, Chen HJ, Lu YJ, Wu YH, Lu MY, Lu CH, Shih AC, Ku MS, Shiu SH, Wu SH, et al. Transcriptome dynamics of developing maize leaves and genomewide prediction of cis elements and their cognate transcription factors. Proceedings of the National Academy of Sciences of the United States of America. 112: E2477-86. PMID 25918418 DOI: 10.1073/pnas.1500605112  1
2015 Wu G, Hufnagel DE, Denton AK, Shiu SH. Retained duplicate genes in green alga Chlamydomonas reinhardtii tend to be stress responsive and experience frequent response gains. Bmc Genomics. 16: 149. PMID 25880851 DOI: 10.1186/s12864-015-1335-5  1
2015 Law M, Childs KL, Campbell MS, Stein JC, Olson AJ, Holt C, Panchy N, Lei J, Jiao D, Andorf CM, Lawrence CJ, Ware D, Shiu SH, Sun Y, Jiang N, et al. Automated update, revision, and quality control of the maize genome annotations using MAKER-P improves the B73 RefGen_v3 gene models and identifies new genes. Plant Physiology. 167: 25-39. PMID 25384563 DOI: 10.1104/pp.114.245027  1
2015 Syu HJ, Subramani T, Liu CT, Shiu SC, Chao JJ, Lin CF. Thorough organic/Si nanostructure heterojunction provided by surfactant assisted PEDOT:PSS 2015 Ieee 42nd Photovoltaic Specialist Conference, Pvsc 2015. DOI: 10.1109/PVSC.2015.7355721  0.48
2015 Xie J, Zhang L, You J, Shiu S. Effective texture classification by texton encoding induced statistical features Pattern Recognition. 48: 447-457. DOI: 10.1016/j.patcog.2014.08.014  0.6
2015 Li Y, Ng PHF, Shiu SCK. A fast evaluation method for RTS game strategy using fuzzy extreme learning machine Natural Computing. DOI: 10.1007/s11047-015-9484-7  0.6
2014 Panchy N, Wu G, Newton L, Tsai CH, Chen J, Benning C, Farré EM, Shiu SH. Prevalence, evolution, and cis-regulation of diel transcription in Chlamydomonas reinhardtii. G3 (Bethesda, Md.). 4: 2461-71. PMID 25354782 DOI: 10.1534/g3.114.015032  1
2014 Moghe GD, Shiu SH. The causes and molecular consequences of polyploidy in flowering plants. Annals of the New York Academy of Sciences. 1320: 16-34. PMID 24903334 DOI: 10.1111/nyas.12466  1
2014 Moghe GD, Hufnagel DE, Tang H, Xiao Y, Dworkin I, Town CD, Conner JK, Shiu SH. Consequences of Whole-Genome Triplication as Revealed by Comparative Genomic Analyses of the Wild Radish Raphanus raphanistrum and Three Other Brassicaceae Species. The Plant Cell. 26: 1925-1937. PMID 24876251 DOI: 10.1105/tpc.114.124297  1
2014 Campbell MS, Law M, Holt C, Stein JC, Moghe GD, Hufnagel DE, Lei J, Achawanantakun R, Jiao D, Lawrence CJ, Ware D, Shiu SH, Childs KL, Sun Y, Jiang N, et al. MAKER-P: a tool kit for the rapid creation, management, and quality control of plant genome annotations. Plant Physiology. 164: 513-24. PMID 24306534 DOI: 10.1104/pp.113.230144  1
2014 Liu JNK, Meng Z, Hu Y, He Y, Shiu SCK, Cho VWS. A hybrid algorithm for recommendation Twitter peers Proceedings of the Acm Symposium On Applied Computing. 644-649. DOI: 10.1145/2554850.2555138  0.6
2014 Zhu P, Zuo W, Zhang L, Shiu SCK, Zhang D. Image set-based collaborative representation for face recognition Ieee Transactions On Information Forensics and Security. 9: 1120-1132. DOI: 10.1109/TIFS.2014.2324277  0.6
2014 Ng PHF, Li YJ, Shiu SCK. Collaborative maneuver planning using fuzzy integral in RTS game 2014 Joint 7th International Conference On Soft Computing and Intelligent Systems, Scis 2014 and 15th International Symposium On Advanced Intelligent Systems, Isis 2014. 661-666. DOI: 10.1109/SCIS-ISIS.2014.7044762  0.6
2014 Syu HJ, Subramani T, Liu CT, Shiu SC, Lin CF. Silicon nanowire/organic hybrid solar cells with zonyl fluorosurfactanct treated PEDOT:PSS 2014 Ieee 40th Photovoltaic Specialist Conference, Pvsc 2014. 1560-1562. DOI: 10.1109/PVSC.2014.6925215  0.48
2014 Yang M, Feng Z, Shiu SCK, Zhang L. Fast and robust face recognition via coding residual map learning based adaptive masking Pattern Recognition. 47: 535-543. DOI: 10.1016/j.patcog.2013.08.003  0.6
2014 Wu GJ, Shiu SM, Hsieh MC, Tsai GJ. Anti-inflammatory activity of a sulfated polysaccharide from the brown alga Sargassum cristaefolium Food Hydrocolloids. DOI: 10.1016/j.foodhyd.2015.01.019  0.4
2014 Liu JNK, He YL, Hu YX, Wang XZ, Shiu SCK. Integrating local information-based link prediction algorithms with owa operator Icpram 2014 - Proceedings of the 3rd International Conference On Pattern Recognition Applications and Methods. 213-219.  0.6
2013 Yang M, Zhang L, Shiu SC, Zhang D. Robust kernel representation with statistical local features for face recognition. Ieee Transactions On Neural Networks and Learning Systems. 24: 900-12. PMID 24808472 DOI: 10.1109/TNNLS.2013.2245340  0.6
2013 Hua Z, Pool JE, Schmitz RJ, Schultz MD, Shiu SH, Ecker JR, Vierstra RD. Epigenomic programming contributes to the genomic drift evolution of the F-Box protein superfamily in Arabidopsis Proceedings of the National Academy of Sciences of the United States of America. 110: 16927-16932. PMID 24082131 DOI: 10.1073/pnas.1316009110  1
2013 Huang CH, Shiu SM, Wu MT, Chen WL, Wang SG, Lee HM. Monacolin K affects lipid metabolism through SIRT1/AMPK pathway in HepG2 cells. Archives of Pharmacal Research. 36: 1541-51. PMID 23657807 DOI: 10.1007/s12272-013-0150-2  0.4
2013 Liu WY, Chang YM, Chen SC, Lu CH, Wu YH, Lu MY, Chen DR, Shih AC, Sheue CR, Huang HC, Yu CP, Lin HH, Shiu SH, Ku MS, Li WH. Anatomical and transcriptional dynamics of maize embryonic leaves during seed germination. Proceedings of the National Academy of Sciences of the United States of America. 110: 3979-84. PMID 23431200 DOI: 10.1073/pnas.1301009110  1
2013 Moghe GD, Lehti-Shiu MD, Seddon AE, Yin S, Chen Y, Juntawong P, Brandizzi F, Bailey-Serres J, Shiu SH. Characteristics and significance of intergenic polyadenylated RNA transcription in Arabidopsis. Plant Physiology. 161: 210-24. PMID 23132786 DOI: 10.1104/pp.112.205245  1
2013 Li Y, Ng PHF, Shiu SCK. Extreme learning machine for determining signed efficiency measure from data International Journal of Uncertainty, Fuzziness and Knowlege-Based Systems. 21: 131-142. DOI: 10.1142/S0218488513400217  0.6
2013 Leung LH, Ng VTY, Shiu SCK. Collaborative discovering influences of news in social network sites Proceedings - 2013 Ieee International Conference On Systems, Man, and Cybernetics, Smc 2013. 712-717. DOI: 10.1109/SMC.2013.126  0.6
2013 Li HL, Ng VTY, Shiu SCK. Predicting short interval tracking polls with online social media Proceedings of the 2013 Ieee 17th International Conference On Computer Supported Cooperative Work in Design, Cscwd 2013. 587-592. DOI: 10.1109/CSCWD.2013.6581027  0.6
2013 Ke S, Shiu SCK, Goertzel B, Yu G, Shi X, Zhou C. Automated extraction of lexicon applied both to chinese and japanese corpora Proceedings - 2012 International Conference On Advanced Computer Science Applications and Technologies, Acsat 2012. 7-12. DOI: 10.1109/ACSAT.2012.15  0.6
2013 Yang M, Zhang L, Shiu SCK, Zhang D. Gabor feature based robust representation and classification for face recognition with Gabor occlusion dictionary Pattern Recognition. 46: 1865-1878. DOI: 10.1016/j.patcog.2012.06.022  0.6
2013 Su P, Li Y, Shiu SCK. An auto-adaptive convex map generating path-finding algorithm: Genetic Convex A* International Journal of Machine Learning and Cybernetics. 4: 551-563. DOI: 10.1007/s13042-012-0120-x  0.6
2013 Ng PHF, Li Y, Shiu SCK. New fuzzy integral for the unit maneuver in RTS game Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8251: 256-261. DOI: 10.1007/978-3-642-45062-4_35  0.6
2013 Li Y, Ng PHF, Shiu SCK. Rapid game strategy evaluation using fuzzy extreme learning machine Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8251: 250-255. DOI: 10.1007/978-3-642-45062-4_34  0.6
2013 Syu HJ, Shiu SC, Hung YJ, Hsueh CC, Lin TC, Subramani T, Lee SL, Lin CF. Influences of silicon nanowire morphology on its electro-optical properties and applications for hybrid solar cells Progress in Photovoltaics: Research and Applications. 21: 1400-1410. DOI: 10.1002/pip.2375  0.48
2012 Vieler A, Wu G, Tsai CH, Bullard B, Cornish AJ, Harvey C, Reca IB, Thornburg C, Achawanantakun R, Buehl CJ, Campbell MS, Cavalier D, Childs KL, Clark TJ, Deshpande R, ... ... Shiu SH, et al. Genome, functional gene annotation, and nuclear transformation of the heterokont oleaginous alga Nannochloropsis oceanica CCMP1779. Plos Genetics. 8: e1003064. PMID 23166516 DOI: 10.1371/journal.pgen.1003064  1
2012 Lehti-Shiu MD, Shiu SH. Diversity, classification and function of the plant protein kinase superfamily. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 367: 2619-39. PMID 22889912 DOI: 10.1098/rstb.2012.0003  1
2012 Savory EA, Zou C, Adhikari BN, Hamilton JP, Buell CR, Shiu SH, Day B. Alternative splicing of a multi-drug transporter from pseudoperonospora cubensis generates an rxlr effector protein that elicits a rapid cell death Plos One. 7. PMID 22496844 DOI: 10.1371/journal.pone.0034701  1
2012 Davidson RM, Gowda M, Moghe G, Lin H, Vaillancourt B, Shiu SH, Jiang N, Robin Buell C. Comparative transcriptomics of three Poaceae species reveals patterns of gene expression evolution. The Plant Journal : For Cell and Molecular Biology. 71: 492-502. PMID 22443345 DOI: 10.1111/j.1365-313X.2012.05005.x  1
2012 Tsai YC, Weir NR, Hill K, Zhang W, Kim HJ, Shiu SH, Schaller GE, Kieber JJ. Characterization of genes involved in cytokinin signaling and metabolism from rice. Plant Physiology. 158: 1666-84. PMID 22383541 DOI: 10.1104/pp.111.192765  1
2012 Syu HJ, Shiu SC, Hung YJ, Lee SL, Lin CF. Effects of silicon nanowire morphology on optical properties and hybrid solar cell performance Proceedings of Spie - the International Society For Optical Engineering. 8471. DOI: 10.1117/12.929511  0.48
2012 Lin CF, Hung SC, Shiu SC, Syu HJ. Si micro-and nano-structures for communication and energy applications Proceedings of Spie - the International Society For Optical Engineering. 8564. DOI: 10.1117/12.2001133  0.48
2012 Yang M, Zhang L, Shiu SCK, Zhang D. Monogenic binary coding: An efficient local feature extraction approach to face recognition Ieee Transactions On Information Forensics and Security. 7: 1738-1751. DOI: 10.1109/TIFS.2012.2217332  0.6
2012 Syu HJ, Hung YJ, Shiu SC, Lee SL, Lin CF. Highly ordered silicon nanowire arrays on heterojunction solar cells Conference Record of the Ieee Photovoltaic Specialists Conference. 1926-1928. DOI: 10.1109/PVSC.2012.6317970  0.48
2012 Yu CM, Ho WJ, Lee YY, Liu JJ, Liao CC, Wang WT, Shiu SC, Lin CF, Shiau HP. Photovoltaic performances enhanced by novel indium nanoparticles using surface plasmonic in GaAs-based 3-junction solar cells Conference Record of the Ieee Photovoltaic Specialists Conference. 835-837. DOI: 10.1109/PVSC.2012.6317733  0.48
2012 Lin TC, Shiu SC, Pun KL, Syu HJ, Lin CF. Layer transfer of crystalline Si thin film by metal-assisted chemical etching concerning different H2O2/HF ratios Conference Record of the Ieee Photovoltaic Specialists Conference. 346-349. DOI: 10.1109/PVSC.2012.6317633  0.48
2012 Li YJ, Ng PHF, Wang HB, Shiu SCK, Li Y. Applying fuzzy integral to performance evaluation in real time strategy game Proceedings - International Conference On Machine Learning and Cybernetics. 1: 289-295. DOI: 10.1109/ICMLC.2012.6358927  0.6
2012 Chao JJ, Shiu SC, Lin CF. GaAs nanowire/poly(3,4-ethylenedioxythiophene):poly(styrenesulfonate) hybrid solar cells with incorporating electron blocking poly(3-hexylthiophene) layer Solar Energy Materials and Solar Cells. 105: 40-45. DOI: 10.1016/j.solmat.2012.05.021  0.48
2012 Lin CF, Chen CS, Yang PC, Shen YM, Ma SY, Shiu SC, Hung SC, Lin SH. The influence of wrinkled ZnO on inverted low bandgap thin film solar cells Solar Energy Materials and Solar Cells. 101: 180-185. DOI: 10.1016/j.solmat.2012.01.042  0.48
2012 Syu HJ, Shiu SC, Lin CF. Silicon nanowire/organic hybrid solar cell with efficiency of 8.40% Solar Energy Materials and Solar Cells. 98: 267-272. DOI: 10.1016/j.solmat.2011.11.003  0.48
2012 Li Y, Zhai J, Shiu S. RTS game strategy evaluation using extreme learning machine Soft Computing. 16: 1627-1637. DOI: 10.1007/s00500-012-0831-7  0.6
2012 O'Neill J, Goertzel B, Ke S, Lian R, Sadeghi K, Shiu S, Wang D, Yu G. Pattern mining for general intelligence: The FISHGRAM algorithm for frequent and interesting subhypergraph mining Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7716: 189-198. DOI: 10.1007/978-3-642-35506-6_20  0.6
2012 Lian R, Goertzel B, Ke S, O'Neill J, Sadeghi K, Shiu S, Wang D, Watkins O, Yu G. Syntax-semantic mapping for general intelligence: Language comprehension as hypergraph homomorphism, language generation as constraint satisfaction Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7716: 158-167. DOI: 10.1007/978-3-642-35506-6_17  0.6
2012 Zhu P, Zhang L, Hu Q, Shiu SCK. Multi-scale patch based collaborative representation for face recognition with margin distribution optimization Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7572: 822-835. DOI: 10.1007/978-3-642-33718-5_59  0.6
2012 Ho WJ, Syu JK, Yu CM, Lee YY, Liu JJ, Shiu SC, Lin CF, Shiau HB. EQE enhancement of top-cell of GaAs-based triple-junction solar cell using graded-index SiO2 nano-pillars sub-wavelength AR-coating 2012 Conference On Lasers and Electro-Optics, Cleo 2012 0.48
2011 Takahashi H, Buchner P, Yoshimoto N, Hawkesford MJ, Shiu SH. Evolutionary relationships and functional diversity of plant sulfate transporters. Frontiers in Plant Science. 2: 119. PMID 22629272 DOI: 10.3389/fpls.2011.00119  1
2011 Joneson S, Stajich JE, Shiu SH, Rosenblum EB. Genomic transition to pathogenicity in chytrid fungi. Plos Pathogens. 7: e1002338. PMID 22072962 DOI: 10.1371/journal.ppat.1002338  1
2011 Yang Y, Sage TL, Liu Y, Ahmad TR, Marshall WF, Shiu SH, Froehlich JE, Imre KM, Osteryoung KW. CLUMPED CHLOROPLASTS 1 is required for plastid separation in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 108: 18530-5. PMID 22025705 DOI: 10.1073/pnas.1106706108  1
2011 Zou C, Sun K, Mackaluso JD, Seddon AE, Jin R, Thomashow MF, Shiu SH. Cis-regulatory code of stress-responsive transcription in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America. 108: 14992-7. PMID 21849619 DOI: 10.1073/pnas.1103202108  1
2011 Schaller GE, Shiu SH, Armitage JP. Two-component systems and their co-option for eukaryotic signal transduction. Current Biology : Cb. 21: R320-30. PMID 21549954 DOI: 10.1016/j.cub.2011.02.045  1
2011 Zheng CH, Zhang L, Ng VT, Shiu SC, Huang DS. Molecular pattern discovery based on penalized matrix decomposition. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 8: 1592-603. PMID 21519114 DOI: 10.1109/TCBB.2011.79  0.6
2011 Carvallo MA, Pino MT, Jeknic Z, Zou C, Doherty CJ, Shiu SH, Chen TH, Thomashow MF. A comparison of the low temperature transcriptomes and CBF regulons of three plant species that differ in freezing tolerance: Solanum commersonii, Solanum tuberosum, and Arabidopsis thaliana. Journal of Experimental Botany. 62: 3807-19. PMID 21511909 DOI: 10.1093/jxb/err066  1
2011 Hua Z, Zou C, Shiu SH, Vierstra RD. Phylogenetic comparison of F-Box (FBX) gene superfamily within the plant kingdom reveals divergent evolutionary histories indicative of genomic drift. Plos One. 6: e16219. PMID 21297981 DOI: 10.1371/journal.pone.0016219  1
2011 Syu HJ, Shiu SC, Lin CF. Si/silicon nanowire/poly(3,4-ethylenedioxythiophene): Poly(styrenesulfonate) heterojunction solar cells Proceedings of Spie - the International Society For Optical Engineering. 8111. DOI: 10.1117/12.893353  0.48
2011 Shiu SC, Lin TC, Pun KL, Syu HJ, Hung SC, Lin CF. Fabrication of multiple Si nanohole thin films from bulk wafer by controlling metal-assisted etching direction Proceedings of Spie - the International Society For Optical Engineering. 8102. DOI: 10.1117/12.893275  0.48
2011 Chao JJ, Shiu SC, Hung SC, Lin CF. GaAs nanowire/PEDOT:PSS hybrid solar cells: The relationship between nanowire morphology and device performance Proceedings of Spie - the International Society For Optical Engineering. 8111. DOI: 10.1117/12.892871  0.48
2011 Syu HJ, Shiu SC, Lin CF. Effect of nanowire length to silicon nanowire/PEDOT:PSS solar cells Conference Record of the Ieee Photovoltaic Specialists Conference. 002490-002491. DOI: 10.1109/PVSC.2011.6186451  0.48
2011 Syu HJ, Shiu SC, Lin CF. Effect of ultrashort silicon nanowires on Si/organic solar cells Proceedings of the Ieee Conference On Nanotechnology. 687-690. DOI: 10.1109/NANO.2011.6144638  0.48
2011 Chao JJ, Wang JJ, Shiu SC, Hung SC, Lin CF. Hydrothermal synthesis of TiO 2 nanorod arrays on transparent conducting substrates Proceedings of the Ieee Conference On Nanotechnology. 1235-1238. DOI: 10.1109/NANO.2011.6144576  0.48
2011 Shiu SC, Lin TC, Pun KL, Syu HJ, Hung SC, Chao JJ, Lin CF. Recycling Si wafers to fabricate multiple Si nanohole thin films by metal-assisted etching Proceedings of the Ieee Conference On Nanotechnology. 1703-1706. DOI: 10.1109/NANO.2011.6144571  0.48
2011 Hung SC, Shiu SC, Chao JJ, Lin CF. Formation of cylindrical profile of Si by KrF excimer laser system for optical interconnect Proceedings of the Ieee Conference On Nanotechnology. 5-8. DOI: 10.1109/NANO.2011.6144570  0.48
2011 Ng PHF, Li YJ, Shiu SCK. Unit formation planning in RTS game by using potential field and fuzzy integral Ieee International Conference On Fuzzy Systems. 178-184. DOI: 10.1109/FUZZY.2011.6007642  0.6
2011 Li YJ, Ng PHF, Wang HB, Shiu SCK, Li Y. Apply different fuzzy integrals in unit selection problem of real time strategy game Ieee International Conference On Fuzzy Systems. 170-177. DOI: 10.1109/FUZZY.2011.6007426  0.6
2011 Syu HJ, Shiu SC, Lin CF. Silicon nanowire/poly(3,4-ethylenedioxythiophene): Poly(styrenesulfonate) core-sheath heterojunction solar cells Optics Infobase Conference Papers 0.48
2011 Liu JNK, Shiu S, Wang Y, Li Z, Jia L, Rao Y. Poly-X: An online intelligent tutoring system for e-learning Proceedings - 3rd International Conference On Data Mining and Intelligent Information Technology Applications, Icmia 2011. 204-209.  0.6
2011 Ho WJ, Lee YY, Hsieh ML, Chen YL, Shiu SC, Lin CF. Efficiency enhancement of 31% of silicon solar cells using spin-on phosphorus diffusion, indium nanoparticles, and spin-on TiO2 space layer 16th Opto-Electronics and Communications Conference, Oecc 2011. 335-336.  0.48
2011 Syu HJ, Shiu SC, Lin CF. Silicon nanowire/poly(3,4-ethylenedioxythiophene): Poly(styrenesulfonate) core-sheath heterojunction solar cells Optics Infobase Conference Papers 0.48
2011 Lin JL, Shiu SY, Chung HL. Seeding methods of Fcm for clustering streaming data Icic Express Letters. 5: 2843-2848.  0.4
2010 Miller R, Wu G, Deshpande RR, Vieler A, Gartner K, Li X, Moellering ER, Zauner S, Cornish AJ, Liu B, Bullard B, Sears BB, Kuo MH, Hegg EL, Shachar-Hill Y, ... Shiu SH, et al. Changes in transcript abundance in chlamydomonas reinhardtii following nitrogen deprivation predict diversion of metabolism Plant Physiology. 154: 1737-1752. PMID 20935180 DOI: 10.1104/pp.110.165159  1
2010 Lin H, Moghe G, Ouyang S, Iezzoni A, Shiu SH, Gu X, Buell CR. Comparative analyses reveal distinct sets of lineage-specific genes within Arabidopsis thaliana. Bmc Evolutionary Biology. 10: 41. PMID 20152032 DOI: 10.1186/1471-2148-10-41  1
2009 Zou C, Lehti-Shiu MD, Thomashow M, Shiu SH. Evolution of stress-regulated gene expression in duplicate genes of Arabidopsis thaliana. Plos Genetics. 5: e1000581. PMID 19649161 DOI: 10.1371/journal.pgen.1000581  1
2009 Zou C, Lehti-Shiu MD, Thibaud-Nissen F, Prakash T, Buell CR, Shiu SH. Evolutionary and expression signatures of pseudogenes in Arabidopsis and rice. Plant Physiology. 151: 3-15. PMID 19641029 DOI: 10.1104/pp.109.140632  1
2009 Lehti-Shiu MD, Zou C, Hanada K, Shiu SH. Evolutionary history and stress regulation of plant receptor-like kinase/pelle genes. Plant Physiology. 150: 12-26. PMID 19321712 DOI: 10.1104/pp.108.134353  1
2009 Hanada K, Vallejo V, Nobuta K, Slotkin RK, Lisch D, Meyers BC, Shiu SH, Jiang N. The functional role of pack-MULEs in rice inferred from purifying selection and expression profile. The Plant Cell. 21: 25-38. PMID 19136648 DOI: 10.1105/tpc.108.063206  1
2008 Hanada K, Zou C, Lehti-Shiu MD, Shinozaki K, Shiu SH. Importance of lineage-specific expansion of plant tandem duplicates in the adaptive response to environmental stimuli. Plant Physiology. 148: 993-1003. PMID 18715958 DOI: 10.1104/pp.108.122457  1
2008 Zhang X, Shiu SH, Shiu S, Cal A, Borevitz JO. Global analysis of genetic, epigenetic and transcriptional polymorphisms in Arabidopsis thaliana using whole genome tiling arrays. Plos Genetics. 4: e1000032. PMID 18369451 DOI: 10.1371/journal.pgen.1000032  1
2008 Rensing SA, Lang D, Zimmer AD, Terry A, Salamov A, Shapiro H, Nishiyama T, Perroud PF, Lindquist EA, Kamisugi Y, Tanahashi T, Sakakibara K, Fujita T, Oishi K, Shin-I T, ... ... Shiu SH, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science (New York, N.Y.). 319: 64-9. PMID 18079367 DOI: 10.1126/science.1150646  1
2007 Gingerich DJ, Hanada K, Shiu SH, Vierstra RD. Large-scale, lineage-specific expansion of a bric-a-brac/tramtrack/broad complex ubiquitin-ligase gene family in rice. The Plant Cell. 19: 2329-48. PMID 17720868 DOI: 10.1105/tpc.107.051300  1
2007 Hanada K, Shiu SH, Li WH. The nonsynonymous/synonymous substitution rate ratio versus the radical/conservative replacement rate ratio in the evolution of mammalian genes. Molecular Biology and Evolution. 24: 2235-41. PMID 17652332 DOI: 10.1093/molbev/msm152  1
2007 Hallen HE, Huebner M, Shiu SH, Güldener U, Trail F. Gene expression shifts during perithecium development in Gibberella zeae (anamorph Fusarium graminearum), with particular emphasis on ion transport proteins. Fungal Genetics and Biology : Fg & B. 44: 1146-56. PMID 17555994 DOI: 10.1016/j.fgb.2007.04.007  1
2007 Hanada K, Zhang X, Borevitz JO, Li WH, Shiu SH. A large number of novel coding small open reading frames in the intergenic regions of the Arabidopsis thaliana genome are transcribed and/or under purifying selection. Genome Research. 17: 632-40. PMID 17395691 DOI: 10.1101/gr.5836207  1
2006 Wang W, Esch JJ, Shiu SH, Agula H, Binder BM, Chang C, Patterson SE, Bleecker AB. Identification of important regions for ethylene binding and signaling in the transmembrane domain of the ETR1 ethylene receptor of Arabidopsis. The Plant Cell. 18: 3429-42. PMID 17189345 DOI: 10.1105/tpc.106.044537  1
2006 Samuel MA, Salt JN, Shiu SH, Goring DR. Multifunctional arm repeat domains in plants. International Review of Cytology. 253: 1-26. PMID 17098053 DOI: 10.1016/S0074-7696(06)53001-3  1
2006 Kim J, Shiu SH, Thoma S, Li WH, Patterson SE. Patterns of expansion and expression divergence in the plant polygalacturonase gene family. Genome Biology. 7: R87. PMID 17010199 DOI: 10.1186/gb-2006-7-9-r87  1
2006 Shiu SH, Byrnes JK, Pan R, Zhang P, Li WH. Role of positive selection in the retention of duplicate genes in mammalian genomes. Proceedings of the National Academy of Sciences of the United States of America. 103: 2232-6. PMID 16461903 DOI: 10.1073/pnas.0510388103  1
2005 Shiu SH, Shih MC, Li WH. Transcription factor families have much higher expansion rates in plants than in animals. Plant Physiology. 139: 18-26. PMID 16166257 DOI: 10.1104/pp.105.065110  1
2004 Nakhamchik A, Zhao Z, Provart NJ, Shiu SH, Keatley SK, Cameron RK, Goring DR. A comprehensive expression analysis of the Arabidopsis proline-rich extensin-like receptor kinase gene family using bioinformatic and experimental approaches. Plant & Cell Physiology. 45: 1875-81. PMID 15653807 DOI: 10.1093/pcp/pch206  1
2004 Shiu SH, Karlowski WM, Pan R, Tzeng YH, Mayer KF, Li WH. Comparative analysis of the receptor-like kinase family in Arabidopsis and rice. The Plant Cell. 16: 1220-34. PMID 15105442 DOI: 10.1105/tpc.020834  0.4
2004 Shiu SH, Li WH. Origins, lineage-specific expansions, and multiple losses of tyrosine kinases in eukaryotes. Molecular Biology and Evolution. 21: 828-40. PMID 14963097 DOI: 10.1093/molbev/msh077  1
2004 Mudgil Y, Shiu SH, Stone SL, Salt JN, Goring DR. A large complement of the predicted Arabidopsis ARM repeat proteins are members of the U-box E3 ubiquitin ligase family. Plant Physiology. 134: 59-66. PMID 14657406 DOI: 10.1104/pp.103.029553  1
2003 Shiu SH, Bleecker AB. Expansion of the receptor-like kinase/Pelle gene family and receptor-like proteins in Arabidopsis. Plant Physiology. 132: 530-43. PMID 12805585 DOI: 10.1104/pp.103.021964  1
2002 Gagne JM, Downes BP, Shiu SH, Durski AM, Vierstra RD. The F-box subunit of the SCF E3 complex is encoded by a diverse superfamily of genes in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 99: 11519-24. PMID 12169662 DOI: 10.1073/pnas.162339999  1
2001 Shiu SH, Bleecker AB. Plant receptor-like kinase gene family: diversity, function, and signaling. Science's Stke : Signal Transduction Knowledge Environment. 2001: re22. PMID 11752632 DOI: 10.1126/stke.2001.113.re22  1
2001 Shiu SH, Bleecker AB. Receptor-like kinases from Arabidopsis form a monophyletic gene family related to animal receptor kinases. Proceedings of the National Academy of Sciences of the United States of America. 98: 10763-8. PMID 11526204 DOI: 10.1073/pnas.181141598  1
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