| Year |
Citation |
Score |
| 2024 |
Wang P, Lehti-Shiu MD, Lotreck S, Segura Abá K, Krysan PJ, Shiu SH. Prediction of plant complex traits via integration of multi-omics data. Nature Communications. 15: 6856. PMID 39127735 DOI: 10.1038/s41467-024-50701-6 |
0.37 |
|
| 2022 |
Ranaweera T, Brown BNI, Wang P, Shiu SH. Temporal regulation of cold transcriptional response in switchgrass. Frontiers in Plant Science. 13: 998400. PMID 36299783 DOI: 10.3389/fpls.2022.998400 |
0.331 |
|
| 2022 |
Noble JA, Bielski NV, Liu MJ, DeFalco TA, Stegmann M, Nelson ADL, McNamara K, Sullivan B, Dinh KK, Khuu N, Hancock S, Shiu SH, Zipfel C, Cheung AY, Beilstein MA, et al. Evolutionary analysis of the LORELEI gene family in plants reveals regulatory subfunctionalization. Plant Physiology. PMID 36156105 DOI: 10.1093/plphys/kiac444 |
0.439 |
|
| 2022 |
Liu WY, Yu CP, Chang CK, Chen HJ, Li MY, Chen YH, Shiu SH, Ku MSB, Tu SL, Lu MJ, Li WH. Regulators of early maize leaf development inferred from transcriptomes of laser capture microdissection (LCM)-isolated embryonic leaf cells. Proceedings of the National Academy of Sciences of the United States of America. 119: e2208795119. PMID 36001691 DOI: 10.1073/pnas.2208795119 |
0.315 |
|
| 2021 |
Moore BM, Lee YS, Wang P, Azodi C, Grotewold E, Shiu SH. Modeling temporal and hormonal regulation of plant transcriptional response to wounding. The Plant Cell. PMID 34865154 DOI: 10.1093/plcell/koab287 |
0.347 |
|
| 2021 |
Noble JA, Seddon A, Uygun S, Bright A, Smith SE, Shiu SH, Palanivelu R. The SEEL motif and members of the MYB-related REVEILLE transcription factor family are important for the expression of LORELEI in the synergid cells of the Arabidopsis female gametophyte. Plant Reproduction. PMID 34716496 DOI: 10.1007/s00497-021-00432-1 |
0.302 |
|
| 2021 |
Cusack SA, Wang P, Lotreck SG, Moore BM, Meng F, Conner JK, Krysan PJ, Lehti-Shiu MD, Shiu SH. Predictive models of genetic redundancy in Arabidopsis thaliana. Molecular Biology and Evolution. PMID 33871641 DOI: 10.1093/molbev/msab111 |
0.391 |
|
| 2021 |
Wang P, Moore BM, Uygun S, Lehti-Shiu MD, Barry CS, Shiu SH. Optimizing the use of gene expression data to predict plant metabolic pathway memberships. The New Phytologist. PMID 33749860 DOI: 10.1111/nph.17355 |
0.387 |
|
| 2020 |
Moore BM, Wang P, Fan P, Lee A, Leong B, Lou YR, Schenck CA, Sugimoto K, Last R, Lehti-Shiu MD, Barry CS, Shiu SH. Within- and cross-species predictions of plant specialized metabolism genes using transfer learning. In Silico Plants. 2: diaa005. PMID 33344884 DOI: 10.1093/insilicoplants/diaa005 |
0.746 |
|
| 2020 |
Liu WY, Lin HH, Yu CP, Chang CK, Chen HJ, Lin JJ, Lu MJ, Tu SL, Shiu SH, Wu SH, Ku MSB, Li WH. Maize ANT1 modulates vascular development, chloroplast development, photosynthesis, and plant growth. Proceedings of the National Academy of Sciences of the United States of America. PMID 32817425 DOI: 10.1073/Pnas.2012245117 |
0.433 |
|
| 2020 |
Fan P, Wang P, Lou YR, Leong BJ, Moore BM, Schenck CA, Combs R, Cao P, Brandizzi F, Shiu SH, Last RL. Evolution of a plant gene cluster in Solanaceae and emergence of metabolic diversity. Elife. 9. PMID 32613943 DOI: 10.7554/Elife.56717 |
0.74 |
|
| 2020 |
Bao Y, Song WM, Wang P, Yu X, Li B, Jiang C, Shiu SH, Zhang H, Bassham DC. COST1 regulates autophagy to control plant drought tolerance. Proceedings of the National Academy of Sciences of the United States of America. PMID 32170020 DOI: 10.1073/Pnas.1918539117 |
0.361 |
|
| 2020 |
Panchy NL, Lloyd JP, Shiu SH. Improved recovery of cell-cycle gene expression in Saccharomyces cerevisiae from regulatory interactions in multiple omics data. Bmc Genomics. 21: 159. PMID 32054475 DOI: 10.1186/S12864-020-6554-8 |
0.47 |
|
| 2020 |
Schwarz B, Azodi CB, Shiu SH, Bauer P. Putative cis-regulatory elements predict iron deficiency responses in Arabidopsis roots. Plant Physiology. PMID 31937681 DOI: 10.1104/Pp.19.00760 |
0.367 |
|
| 2020 |
Fan P, Wang P, Lou Y, Leong BJ, Moore BM, Schenck CA, Combs R, Cao P, Brandizzi F, Shiu S. Author response: Evolution of a plant gene cluster in Solanaceae and emergence of metabolic diversity Elife. DOI: 10.7554/Elife.56717.Sa2 |
0.438 |
|
| 2019 |
Azodi CB, Pardo J, VanBuren R, de Los Campos G, Shiu SH. Transcriptome-based prediction of complex traits in maize. The Plant Cell. PMID 31641024 DOI: 10.1105/Tpc.19.00332 |
0.387 |
|
| 2019 |
Uygun S, Azodi CB, Shiu SH. Cis-regulatory code for predicting plant cell-type transcriptional response to high salinity. Plant Physiology. PMID 31551359 DOI: 10.1104/Pp.19.00653 |
0.399 |
|
| 2019 |
Lloyd JP, Bowman MJ, Azodi CB, Sowers RP, Moghe GD, Childs KL, Shiu SH. Evolutionary characteristics of intergenic transcribed regions indicate rare novel genes and widespread noisy transcription in the Poaceae. Scientific Reports. 9: 12122. PMID 31431676 DOI: 10.1038/S41598-019-47797-Y |
0.761 |
|
| 2019 |
Panchy NL, Azodi CB, Winship EF, O'Malley RC, Shiu SH. Expression and regulatory asymmetry of retained Arabidopsis thaliana transcription factor genes derived from whole genome duplication. Bmc Evolutionary Biology. 19: 77. PMID 30866803 DOI: 10.1186/S12862-019-1398-Z |
0.485 |
|
| 2019 |
Chang YM, Lin HH, Liu WY, Yu CP, Chen HJ, Wartini PP, Kao YY, Wu YH, Lin JJ, Lu MJ, Tu SL, Wu SH, Shiu SH, Ku MSB, Li WH. Comparative transcriptomics method to infer gene coexpression networks and its applications to maize and rice leaf transcriptomes. Proceedings of the National Academy of Sciences of the United States of America. PMID 30718437 DOI: 10.1073/Pnas.1817621116 |
0.467 |
|
| 2019 |
Moore BM, Wang P, Fan P, Leong B, Schenck CA, Lloyd JP, Lehti-Shiu MD, Last RL, Pichersky E, Shiu SH. Robust predictions of specialized metabolism genes through machine learning. Proceedings of the National Academy of Sciences of the United States of America. PMID 30674669 DOI: 10.1073/Pnas.1817074116 |
0.773 |
|
| 2018 |
Wang P, Moore BM, Panchy NL, Meng F, Lehti-Shiu MD, Shiu SH. Factors influencing gene family size variation among related species in a plant family, Solanaceae. Genome Biology and Evolution. PMID 30239695 DOI: 10.1093/Gbe/Evy193 |
0.51 |
|
| 2018 |
Liu MJ, Sugimoto K, Uygun S, Panchy N, Campbell MS, Yandell M, Howe GA, Shiu SH. Regulatory Divergence in Wound-Responsive Gene Expression between Domesticated and Wild Tomato. The Plant Cell. PMID 29743197 DOI: 10.1105/Tpc.18.00194 |
0.452 |
|
| 2018 |
Lloyd JP, Tsai ZT, Sowers RP, Panchy NL, Shiu SH. A model-based approach for identifying functional intergenic transcribed regions and non-coding RNAs. Molecular Biology and Evolution. PMID 29554332 DOI: 10.1093/Molbev/Msy035 |
0.517 |
|
| 2017 |
Vieler A, Wu G, Tsai CH, Bullard B, Cornish AJ, Harvey C, Reca IB, Thornburg C, Achawanantakun R, Buehl CJ, Campbell MS, Cavalier D, Childs KL, Clark TJ, Deshpande R, ... ... Shiu SH, et al. Correction: Genome, Functional Gene Annotation, and Nuclear Transformation of the Heterokont Oleaginous Alga Nannochloropsis oceanica CCMP1779. Plos Genetics. 13: e1006802. PMID 28542203 DOI: 10.1371/journal.pgen.1006802 |
0.708 |
|
| 2017 |
Tsai ZT, Lloyd JP, Shiu SH. Defining Functional Genic Regions in the Human Genome through Integration of Biochemical, Evolutionary, and Genetic Evidence. Molecular Biology and Evolution. PMID 28398576 DOI: 10.1093/molbev/msx101 |
0.348 |
|
| 2017 |
Uygun S, Seddon AE, Azodi CB, Shiu SH. Predictive models of spatial transcriptional response to high salinity. Plant Physiology. PMID 28373393 DOI: 10.1104/pp.16.01828 |
0.376 |
|
| 2017 |
Bennett MS, Shiu SH, Triemer RE. A rare case of plastid protein-coding gene duplication in the chloroplast genome of Euglena archaeoplastidiata (Euglenophyta). Journal of Phycology. PMID 28295310 DOI: 10.1111/Jpy.12531 |
0.377 |
|
| 2016 |
Uygun S, Peng C, Lehti-Shiu MD, Last RL, Shiu SH. Utility and Limitations of Using Gene Expression Data to Identify Functional Associations. Plos Computational Biology. 12: e1005244. PMID 27935950 DOI: 10.1371/Journal.Pcbi.1005244 |
0.753 |
|
| 2016 |
Lehti-Shiu M, Panchy N, Wang P, Uygun S, Shiu SH. Diversity, expansion, and evolutionary novelty of plant DNA-binding transcription factor families. Biochimica Et Biophysica Acta. PMID 27522016 DOI: 10.1016/j.bbagrm.2016.08.005 |
0.347 |
|
| 2016 |
Panchy N, Lehti-Shiu MD, Shiu SH. Gene Duplicates: from origins to implications for plant evolution. Plant Physiology. PMID 27288366 DOI: 10.1104/Pp.16.00523 |
0.568 |
|
| 2015 |
Liu T, Newton L, Liu MJ, Shiu SH, Farre EM. A G-box-like motif is necessary for transcriptional regulation by circadian pseudo-response regulators in Arabidopsis. Plant Physiology. PMID 26586835 DOI: 10.1104/pp.15.01562 |
0.321 |
|
| 2015 |
Lloyd JP, Seddon AE, Moghe GD, Simenc MC, Shiu SH. Characteristics of Plant Essential Genes Allow for within- and between-Species Prediction of Lethal Mutant Phenotypes. The Plant Cell. 27: 2133-47. PMID 26286535 DOI: 10.1105/Tpc.15.00051 |
0.767 |
|
| 2015 |
Poliner E, Panchy N, Newton L, Wu G, Lapinsky A, Bullard B, Zienkiewicz A, Benning C, Shiu SH, Farré EM. Transcriptional coordination of physiological responses in Nannochloropsis oceanica CCMP1779 under light/dark cycles. The Plant Journal : For Cell and Molecular Biology. 83: 1097-113. PMID 26216534 DOI: 10.1111/Tpj.12944 |
0.72 |
|
| 2015 |
Lehti-Shiu MD, Uygun S, Moghe G, Panchy N, Fang L, Hufnagel DE, Jasicki HL, Feig M, Shiu SH. Molecular evidence for functional divergence and decay of a transcription factor derived from whole genome duplication in Arabidopsis thaliana. Plant Physiology. PMID 26103993 DOI: 10.1104/Pp.15.00689 |
0.711 |
|
| 2015 |
Liu MJ, Seddon AE, Tsai ZT, Major IT, Floer M, Howe GA, Shiu SH. Determinants of nucleosome positioning and their influence on plant gene expression. Genome Research. 25: 1182-95. PMID 26063739 DOI: 10.1101/Gr.188680.114 |
0.401 |
|
| 2015 |
Peng C, Uygun S, Shiu SH, Last RL. The Impact of the Branched-Chain Ketoacid Dehydrogenase Complex on Amino Acid Homeostasis in Arabidopsis. Plant Physiology. PMID 25986129 DOI: 10.1104/Pp.15.00461 |
0.698 |
|
| 2015 |
Yu CP, Chen SC, Chang YM, Liu WY, Lin HH, Lin JJ, Chen HJ, Lu YJ, Wu YH, Lu MY, Lu CH, Shih AC, Ku MS, Shiu SH, Wu SH, et al. Transcriptome dynamics of developing maize leaves and genomewide prediction of cis elements and their cognate transcription factors. Proceedings of the National Academy of Sciences of the United States of America. 112: E2477-86. PMID 25918418 DOI: 10.1073/pnas.1500605112 |
0.396 |
|
| 2015 |
Wu G, Hufnagel DE, Denton AK, Shiu SH. Retained duplicate genes in green alga Chlamydomonas reinhardtii tend to be stress responsive and experience frequent response gains. Bmc Genomics. 16: 149. PMID 25880851 DOI: 10.1186/S12864-015-1335-5 |
0.746 |
|
| 2015 |
Law M, Childs KL, Campbell MS, Stein JC, Olson AJ, Holt C, Panchy N, Lei J, Jiao D, Andorf CM, Lawrence CJ, Ware D, Shiu SH, Sun Y, Jiang N, et al. Automated update, revision, and quality control of the maize genome annotations using MAKER-P improves the B73 RefGen_v3 gene models and identifies new genes. Plant Physiology. 167: 25-39. PMID 25384563 DOI: 10.1104/Pp.114.245027 |
0.383 |
|
| 2014 |
Panchy N, Wu G, Newton L, Tsai CH, Chen J, Benning C, Farré EM, Shiu SH. Prevalence, evolution, and cis-regulation of diel transcription in Chlamydomonas reinhardtii. G3 (Bethesda, Md.). 4: 2461-71. PMID 25354782 DOI: 10.1534/G3.114.015032 |
0.732 |
|
| 2014 |
Moghe GD, Shiu SH. The causes and molecular consequences of polyploidy in flowering plants. Annals of the New York Academy of Sciences. 1320: 16-34. PMID 24903334 DOI: 10.1111/nyas.12466 |
0.669 |
|
| 2014 |
Moghe GD, Hufnagel DE, Tang H, Xiao Y, Dworkin I, Town CD, Conner JK, Shiu SH. Consequences of Whole-Genome Triplication as Revealed by Comparative Genomic Analyses of the Wild Radish Raphanus raphanistrum and Three Other Brassicaceae Species. The Plant Cell. 26: 1925-1937. PMID 24876251 DOI: 10.1105/Tpc.114.124297 |
0.757 |
|
| 2014 |
Campbell MS, Law M, Holt C, Stein JC, Moghe GD, Hufnagel DE, Lei J, Achawanantakun R, Jiao D, Lawrence CJ, Ware D, Shiu SH, Childs KL, Sun Y, Jiang N, et al. MAKER-P: a tool kit for the rapid creation, management, and quality control of plant genome annotations. Plant Physiology. 164: 513-24. PMID 24306534 DOI: 10.1104/Pp.113.230144 |
0.68 |
|
| 2013 |
Hua Z, Pool JE, Schmitz RJ, Schultz MD, Shiu SH, Ecker JR, Vierstra RD. Epigenomic programming contributes to the genomic drift evolution of the F-Box protein superfamily in Arabidopsis Proceedings of the National Academy of Sciences of the United States of America. 110: 16927-16932. PMID 24082131 DOI: 10.1073/Pnas.1316009110 |
0.412 |
|
| 2013 |
Liu WY, Chang YM, Chen SC, Lu CH, Wu YH, Lu MY, Chen DR, Shih AC, Sheue CR, Huang HC, Yu CP, Lin HH, Shiu SH, Ku MS, Li WH. Anatomical and transcriptional dynamics of maize embryonic leaves during seed germination. Proceedings of the National Academy of Sciences of the United States of America. 110: 3979-84. PMID 23431200 DOI: 10.1073/pnas.1301009110 |
0.381 |
|
| 2013 |
Moghe GD, Lehti-Shiu MD, Seddon AE, Yin S, Chen Y, Juntawong P, Brandizzi F, Bailey-Serres J, Shiu SH. Characteristics and significance of intergenic polyadenylated RNA transcription in Arabidopsis. Plant Physiology. 161: 210-24. PMID 23132786 DOI: 10.1104/Pp.112.205245 |
0.728 |
|
| 2012 |
Vieler A, Wu G, Tsai CH, Bullard B, Cornish AJ, Harvey C, Reca IB, Thornburg C, Achawanantakun R, Buehl CJ, Campbell MS, Cavalier D, Childs KL, Clark TJ, Deshpande R, ... ... Shiu SH, et al. Genome, functional gene annotation, and nuclear transformation of the heterokont oleaginous alga Nannochloropsis oceanica CCMP1779. Plos Genetics. 8: e1003064. PMID 23166516 DOI: 10.1371/Journal.Pgen.1003064 |
0.757 |
|
| 2012 |
Savory EA, Zou C, Adhikari BN, Hamilton JP, Buell CR, Shiu SH, Day B. Alternative splicing of a multi-drug transporter from pseudoperonospora cubensis generates an rxlr effector protein that elicits a rapid cell death Plos One. 7. PMID 22496844 DOI: 10.1371/Journal.Pone.0034701 |
0.314 |
|
| 2012 |
Davidson RM, Gowda M, Moghe G, Lin H, Vaillancourt B, Shiu SH, Jiang N, Robin Buell C. Comparative transcriptomics of three Poaceae species reveals patterns of gene expression evolution. The Plant Journal : For Cell and Molecular Biology. 71: 492-502. PMID 22443345 DOI: 10.1111/J.1365-313X.2012.05005.X |
0.755 |
|
| 2012 |
Tsai YC, Weir NR, Hill K, Zhang W, Kim HJ, Shiu SH, Schaller GE, Kieber JJ. Characterization of genes involved in cytokinin signaling and metabolism from rice. Plant Physiology. 158: 1666-84. PMID 22383541 DOI: 10.1104/Pp.111.192765 |
0.367 |
|
| 2011 |
Joneson S, Stajich JE, Shiu SH, Rosenblum EB. Genomic transition to pathogenicity in chytrid fungi. Plos Pathogens. 7: e1002338. PMID 22072962 DOI: 10.1371/Journal.Ppat.1002338 |
0.367 |
|
| 2011 |
Carvallo MA, Pino MT, Jeknic Z, Zou C, Doherty CJ, Shiu SH, Chen TH, Thomashow MF. A comparison of the low temperature transcriptomes and CBF regulons of three plant species that differ in freezing tolerance: Solanum commersonii, Solanum tuberosum, and Arabidopsis thaliana. Journal of Experimental Botany. 62: 3807-19. PMID 21511909 DOI: 10.1093/Jxb/Err066 |
0.403 |
|
| 2011 |
Hua Z, Zou C, Shiu SH, Vierstra RD. Phylogenetic comparison of F-Box (FBX) gene superfamily within the plant kingdom reveals divergent evolutionary histories indicative of genomic drift. Plos One. 6: e16219. PMID 21297981 DOI: 10.1371/Journal.Pone.0016219 |
0.426 |
|
| 2010 |
Miller R, Wu G, Deshpande RR, Vieler A, Gartner K, Li X, Moellering ER, Zauner S, Cornish AJ, Liu B, Bullard B, Sears BB, Kuo MH, Hegg EL, Shachar-Hill Y, ... Shiu SH, et al. Changes in transcript abundance in chlamydomonas reinhardtii following nitrogen deprivation predict diversion of metabolism Plant Physiology. 154: 1737-1752. PMID 20935180 DOI: 10.1104/Pp.110.165159 |
0.721 |
|
| 2010 |
Lin H, Moghe G, Ouyang S, Iezzoni A, Shiu SH, Gu X, Buell CR. Comparative analyses reveal distinct sets of lineage-specific genes within Arabidopsis thaliana. Bmc Evolutionary Biology. 10: 41. PMID 20152032 DOI: 10.1186/1471-2148-10-41 |
0.767 |
|
| 2009 |
Zou C, Lehti-Shiu MD, Thomashow M, Shiu SH. Evolution of stress-regulated gene expression in duplicate genes of Arabidopsis thaliana. Plos Genetics. 5: e1000581. PMID 19649161 DOI: 10.1371/Journal.Pgen.1000581 |
0.34 |
|
| 2009 |
Zou C, Lehti-Shiu MD, Thibaud-Nissen F, Prakash T, Buell CR, Shiu SH. Evolutionary and expression signatures of pseudogenes in Arabidopsis and rice. Plant Physiology. 151: 3-15. PMID 19641029 DOI: 10.1104/pp.109.140632 |
0.463 |
|
| 2009 |
Lehti-Shiu MD, Zou C, Hanada K, Shiu SH. Evolutionary history and stress regulation of plant receptor-like kinase/pelle genes. Plant Physiology. 150: 12-26. PMID 19321712 DOI: 10.1104/pp.108.134353 |
0.347 |
|
| 2009 |
Hanada K, Vallejo V, Nobuta K, Slotkin RK, Lisch D, Meyers BC, Shiu SH, Jiang N. The functional role of pack-MULEs in rice inferred from purifying selection and expression profile. The Plant Cell. 21: 25-38. PMID 19136648 DOI: 10.1105/Tpc.108.063206 |
0.407 |
|
| 2008 |
Schaller GE, Kieber JJ, Shiu SH. Two-component signaling elements and histidyl-aspartyl phosphorelays. The Arabidopsis Book / American Society of Plant Biologists. 6: e0112. PMID 22303237 DOI: 10.1199/Tab.0112 |
0.33 |
|
| 2008 |
Hanada K, Zou C, Lehti-Shiu MD, Shinozaki K, Shiu SH. Importance of lineage-specific expansion of plant tandem duplicates in the adaptive response to environmental stimuli. Plant Physiology. 148: 993-1003. PMID 18715958 DOI: 10.1104/pp.108.122457 |
0.489 |
|
| 2008 |
Zhang X, Shiu SH, Shiu S, Cal A, Borevitz JO. Global analysis of genetic, epigenetic and transcriptional polymorphisms in Arabidopsis thaliana using whole genome tiling arrays. Plos Genetics. 4: e1000032. PMID 18369451 DOI: 10.1371/Journal.Pgen.1000032 |
0.401 |
|
| 2008 |
Rensing SA, Lang D, Zimmer AD, Terry A, Salamov A, Shapiro H, Nishiyama T, Perroud PF, Lindquist EA, Kamisugi Y, Tanahashi T, Sakakibara K, Fujita T, Oishi K, Shin-I T, ... ... Shiu SH, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science (New York, N.Y.). 319: 64-9. PMID 18079367 DOI: 10.1126/Science.1150646 |
0.532 |
|
| 2008 |
Shiu SH, Borevitz JO. The next generation of microarray research: applications in evolutionary and ecological genomics. Heredity. 100: 141-9. PMID 17091126 DOI: 10.1038/Sj.Hdy.6800916 |
0.424 |
|
| 2007 |
Gingerich DJ, Hanada K, Shiu SH, Vierstra RD. Large-scale, lineage-specific expansion of a bric-a-brac/tramtrack/broad complex ubiquitin-ligase gene family in rice. The Plant Cell. 19: 2329-48. PMID 17720868 DOI: 10.1105/Tpc.107.051300 |
0.371 |
|
| 2007 |
Robatzek S, Bittel P, Chinchilla D, Köchner P, Felix G, Shiu SH, Boller T. Molecular identification and characterization of the tomato flagellin receptor LeFLS2, an orthologue of Arabidopsis FLS2 exhibiting characteristically different perception specificities. Plant Molecular Biology. 64: 539-47. PMID 17530419 DOI: 10.1007/S11103-007-9173-8 |
0.314 |
|
| 2007 |
Ahn YO, Zheng M, Bevan DR, Esen A, Shiu SH, Benson J, Peng HP, Miller JT, Cheng CL, Poulton JE, Shih MC. Functional genomic analysis of Arabidopsis thaliana glycoside hydrolase family 35. Phytochemistry. 68: 1510-20. PMID 17466346 DOI: 10.1016/J.Phytochem.2007.03.021 |
0.329 |
|
| 2007 |
Hanada K, Zhang X, Borevitz JO, Li WH, Shiu SH. A large number of novel coding small open reading frames in the intergenic regions of the Arabidopsis thaliana genome are transcribed and/or under purifying selection. Genome Research. 17: 632-40. PMID 17395691 DOI: 10.1101/Gr.5836207 |
0.328 |
|
| 2006 |
Wang W, Esch JJ, Shiu SH, Agula H, Binder BM, Chang C, Patterson SE, Bleecker AB. Identification of important regions for ethylene binding and signaling in the transmembrane domain of the ETR1 ethylene receptor of Arabidopsis. The Plant Cell. 18: 3429-42. PMID 17189345 DOI: 10.1105/Tpc.106.044537 |
0.724 |
|
| 2006 |
Samuel MA, Salt JN, Shiu SH, Goring DR. Multifunctional arm repeat domains in plants. International Review of Cytology. 253: 1-26. PMID 17098053 DOI: 10.1016/S0074-7696(06)53001-3 |
0.382 |
|
| 2006 |
Kim J, Shiu SH, Thoma S, Li WH, Patterson SE. Patterns of expansion and expression divergence in the plant polygalacturonase gene family. Genome Biology. 7: R87. PMID 17010199 DOI: 10.1186/Gb-2006-7-9-R87 |
0.519 |
|
| 2006 |
Shiu SH, Byrnes JK, Pan R, Zhang P, Li WH. Role of positive selection in the retention of duplicate genes in mammalian genomes. Proceedings of the National Academy of Sciences of the United States of America. 103: 2232-6. PMID 16461903 DOI: 10.1073/Pnas.0510388103 |
0.491 |
|
| 2005 |
Shiu SH, Shih MC, Li WH. Transcription factor families have much higher expansion rates in plants than in animals. Plant Physiology. 139: 18-26. PMID 16166257 DOI: 10.1104/Pp.105.065110 |
0.48 |
|
| 2004 |
Nakhamchik A, Zhao Z, Provart NJ, Shiu SH, Keatley SK, Cameron RK, Goring DR. A comprehensive expression analysis of the Arabidopsis proline-rich extensin-like receptor kinase gene family using bioinformatic and experimental approaches. Plant & Cell Physiology. 45: 1875-81. PMID 15653807 DOI: 10.1093/Pcp/Pch206 |
0.443 |
|
| 2004 |
Shiu SH, Karlowski WM, Pan R, Tzeng YH, Mayer KF, Li WH. Comparative analysis of the receptor-like kinase family in Arabidopsis and rice. The Plant Cell. 16: 1220-34. PMID 15105442 DOI: 10.1105/Tpc.020834 |
0.483 |
|
| 2004 |
Shiu SH, Li WH. Origins, lineage-specific expansions, and multiple losses of tyrosine kinases in eukaryotes. Molecular Biology and Evolution. 21: 828-40. PMID 14963097 DOI: 10.1093/Molbev/Msh077 |
0.386 |
|
| 2004 |
Mudgil Y, Shiu SH, Stone SL, Salt JN, Goring DR. A large complement of the predicted Arabidopsis ARM repeat proteins are members of the U-box E3 ubiquitin ligase family. Plant Physiology. 134: 59-66. PMID 14657406 DOI: 10.1104/Pp.103.029553 |
0.323 |
|
| 2003 |
Shiu SH, Bleecker AB. Expansion of the receptor-like kinase/Pelle gene family and receptor-like proteins in Arabidopsis. Plant Physiology. 132: 530-43. PMID 12805585 DOI: 10.1104/Pp.103.021964 |
0.679 |
|
| 2002 |
Gagne JM, Downes BP, Shiu SH, Durski AM, Vierstra RD. The F-box subunit of the SCF E3 complex is encoded by a diverse superfamily of genes in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 99: 11519-24. PMID 12169662 DOI: 10.1073/Pnas.162339999 |
0.344 |
|
| 2001 |
Shiu SH, Bleecker AB. Plant receptor-like kinase gene family: diversity, function, and signaling. Science's Stke : Signal Transduction Knowledge Environment. 2001: re22. PMID 11752632 DOI: 10.1126/Stke.2001.113.Re22 |
0.711 |
|
| 2001 |
Shiu SH, Bleecker AB. Receptor-like kinases from Arabidopsis form a monophyletic gene family related to animal receptor kinases. Proceedings of the National Academy of Sciences of the United States of America. 98: 10763-8. PMID 11526204 DOI: 10.1073/Pnas.181141598 |
0.697 |
|
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