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Timothy J. Donohue - Publications

University of Wisconsin, Madison, Madison, WI 
Microbiology Biology, Bacteriology

139 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Ingle AT, Fortney NW, Myers KS, Walters KA, Scarborough MJ, Donohue TJ, Noguera DR. Metagenome-Assembled Genomes from a Microbiome Grown in Dairy Manure Hydrolysate. Microbiology Resource Announcements. e0029222. PMID 35894622 DOI: 10.1128/mra.00292-22  0.734
2022 Fortney NW, Myers KS, Ingle AT, Walters KA, Scarborough MJ, Donohue TJ, Noguera DR. Metagenomes and Metagenome-Assembled Genomes from Microbiomes Metabolizing Thin Stillage from an Ethanol Biorefinery. Microbiology Resource Announcements. e0029022. PMID 35862918 DOI: 10.1128/mra.00290-22  0.725
2022 Walters KA, Myers KS, Wang H, Fortney NW, Ingle AT, Scarborough MJ, Donohue TJ, Noguera DR. Metagenomes and Metagenome-Assembled Genomes from Microbial Communities Fermenting Ultrafiltered Milk Permeate. Microbiology Resource Announcements. e0029322. PMID 35770995 DOI: 10.1128/mra.00293-22  0.726
2022 Lakey BD, Myers KS, Alberge F, Mettert EL, Kiley PJ, Noguera DR, Donohue TJ. The essential Rhodobacter sphaeroides CenKR two-component system regulates cell division and envelope biosynthesis. Plos Genetics. 18: e1010270. PMID 35767559 DOI: 10.1371/journal.pgen.1010270  0.785
2022 Wadler CS, Wolters JF, Fortney NW, Throckmorton KO, Zhang Y, Miller CR, Schneider RM, Wendt-Pienkowski E, Currie CR, Donohue TJ, Noguera DR, Hittinger CT, Thomas MG. Utilization of lignocellulosic biofuel conversion residue by diverse microorganisms. Biotechnology For Biofuels and Bioproducts. 15: 70. PMID 35751080 DOI: 10.1186/s13068-022-02168-0  0.543
2022 Beach NK, Myers KS, Donohue TJ, Noguera DR. Metagenomes from 25 Low-Abundance Microbes in a Partial Nitritation Anammox Microbiome. Microbiology Resource Announcements. e0021222. PMID 35575561 DOI: 10.1128/mra.00212-22  0.519
2022 Linz AM, Ma Y, Scholz S, Noguera DR, Donohue TJ. iNovo479: Metabolic Modeling Provides a Roadmap to Optimize Bioproduct Yield from Deconstructed Lignin Aromatics by . Metabolites. 12. PMID 35448553 DOI: 10.3390/metabo12040366  0.794
2022 Beach NK, Myers KS, Owen BR, Seib M, Donohue TJ, Noguera DR. Correction for Beach et al., "Exploring the Meta-regulon of the CRP/FNR Family of Global Transcriptional Regulators in a Partial-Nitritation Anammox Microbiome". Msystems. e0021322. PMID 35414209 DOI: 10.1128/msystems.00213-22  0.492
2022 Scarborough MJ, Myers KS, Fortney NW, Ingle AT, Donohue TJ, Noguera DR. Metagenome-Assembled Genomes from a Microbiome Converting Xylose to Medium-Chain Carboxylic Acids. Microbiology Resource Announcements. 11: e0115121. PMID 35343806 DOI: 10.1128/mra.01151-21  0.543
2022 Myers KS, Behari Lal P, Noguera DR, Donohue TJ. Using Genome Scale Mutant Libraries to Identify Essential Genes. Methods in Molecular Biology (Clifton, N.J.). 2377: 215-236. PMID 34709619 DOI: 10.1007/978-1-0716-1720-5_12  0.58
2021 Beach NK, Myers KS, Owen BR, Seib M, Donohue TJ, Noguera DR. Exploring the Meta-regulon of the CRP/FNR Family of Global Transcriptional Regulators in a Partial-Nitritation Anammox Microbiome. Msystems. e0090621. PMID 34636676 DOI: 10.1128/mSystems.00906-21  0.587
2021 Linz AM, Ma Y, Perez JM, Myers KS, Kontur WS, Noguera DR, Donohue TJ. Aromatic dimer dehydrogenases from reduce monoaromatic diketones. Applied and Environmental Microbiology. AEM0174221. PMID 34613756 DOI: 10.1128/AEM.01742-21  0.795
2021 Ingle AT, Fortney NW, Walters KA, Donohue TJ, Noguera DR. Mixed Acid Fermentation of Carbohydrate-Rich Dairy Manure Hydrolysate. Frontiers in Bioengineering and Biotechnology. 9: 724304. PMID 34414173 DOI: 10.3389/fbioe.2021.724304  0.731
2021 Fortney NW, Hanson NJ, Rosa PRF, Donohue TJ, Noguera DR. Diverse Profile of Fermentation Byproducts From Thin Stillage. Frontiers in Bioengineering and Biotechnology. 9: 695306. PMID 34336807 DOI: 10.3389/fbioe.2021.695306  0.535
2021 Myers KS, Noguera DR, Donohue TJ. Promoter Architecture Differences among and Other Bacterial Taxa. Msystems. e0052621. PMID 34254822 DOI: 10.1128/mSystems.00526-21  0.575
2021 Myers KS, Place M, Kominek J, Noguera DR, Donohue TJ. Delila-PY, a Pipeline for Utilizing the Delila Suite of Software to Identify Potential DNA Binding Motifs. Microbiology Resource Announcements. 10. PMID 33858925 DOI: 10.1128/MRA.00160-21  0.503
2021 Ma Y, Donohue TJ, Noguera DR. Kinetic modeling of anaerobic degradation of plant-derived aromatic mixtures by Rhodopseudomonas palustris. Biodegradation. PMID 33675449 DOI: 10.1007/s10532-021-09932-3  0.546
2021 Perez JM, Kontur WS, Gehl C, Gille DM, Ma Y, Niles AV, Umana G, Donohue TJ, Noguera DR. Redundancy in aromatic O-demethylation and ring opening reactions in and their impact in the metabolism of plant derived phenolics. Applied and Environmental Microbiology. PMID 33579679 DOI: 10.1128/AEM.02794-20  0.802
2021 Glanville DG, Mullineaux-Sanders C, Corcoran CJ, Burger BT, Imam S, Donohue TJ, Ulijasz AT. A High-Throughput Method for Identifying Novel Genes That Influence Metabolic Pathways Reveals New Iron and Heme Regulation in Pseudomonas aeruginosa. Msystems. 6. PMID 33531406 DOI: 10.1128/mSystems.00933-20  0.8
2020 Todor H, Osadnik H, Campbell EA, Myers KS, Li H, Donohue TJ, Gross CA. Rewiring the specificity of extracytoplasmic function sigma factors. Proceedings of the National Academy of Sciences of the United States of America. PMID 33318184 DOI: 10.1073/pnas.2020204117  0.558
2020 Henry KK, Ross W, Myers KS, Lemmer KC, Vera JM, Landick R, Donohue TJ, Gourse RL. A majority of promoters lack a crucial RNA polymerase recognition feature, enabling coordinated transcription activation. Proceedings of the National Academy of Sciences of the United States of America. PMID 33168725 DOI: 10.1073/pnas.2010087117  0.784
2020 Scarborough MJ, Hamilton JJ, Erb EA, Donohue TJ, Noguera DR. Diagnosing and Predicting Mixed-Culture Fermentations with Unicellular and Guild-Based Metabolic Models. Msystems. 5. PMID 32994290 DOI: 10.1128/mSystems.00755-20  0.561
2020 Myers KS, Vera JM, Lemmer KC, Linz AM, Landick R, Noguera DR, Donohue TJ. Genome-Wide Identification of Transcription Start Sites in Two , Rhodobacter sphaeroides 2.4.1 and Novosphingobium aromaticivorans DSM 12444. Microbiology Resource Announcements. 9. PMID 32883797 DOI: 10.1128/MRA.00880-20  0.778
2020 Myers KS, Place M, Noguera DR, Donohue TJ. COnTORT: COmprehensive Transcriptomic ORganizational Tool for Simultaneously Retrieving and Organizing Numerous Gene Expression Data Sets from the NCBI Gene Expression Omnibus Database. Microbiology Resource Announcements. 9. PMID 32554783 DOI: 10.1128/MRA.00587-20  0.522
2020 Lemke RAS, Olson SM, Morse K, Karlen SD, Higbee A, Beebe ET, Ralph J, Coon JJ, Fox BG, Donohue TJ. A bacterial biosynthetic pathway for methylated furan fatty acids. The Journal of Biological Chemistry. PMID 32434926 DOI: 10.1074/Jbc.Ra120.013697  0.562
2020 Lemmer KC, Alberge F, Myers KS, Dohnalkova AC, Schaub RE, Lenz JD, Imam S, Dillard JP, Noguera DR, Donohue TJ. The NtrYX Two-Component System Regulates the Bacterial Cell Envelope. Mbio. 11. PMID 32430476 DOI: 10.1128/Mbio.00957-20  0.783
2020 Parrell D, Lemmer K, Donohue T, Wright E. Deletion of the ntrYX Two Component System in Rhodobacter Sphaeroides Causes the Generation of Diverse Extracellular Membrane Structures Microscopy and Microanalysis. 1-3. DOI: 10.1017/S143192762002190X  0.766
2019 Oshlag JZ, Ma Y, Morse K, Burger BT, Lemke RA, Karlen SD, Myers KS, Donohue TJ, Noguera DR. Anaerobic degradation of syringic acid by an adapted strain of . Applied and Environmental Microbiology. PMID 31732577 DOI: 10.1128/Aem.01888-19  0.802
2019 Scarborough MJ, Myers KS, Donohue TJ, Noguera DR. Medium-chain fatty acid synthesis by Weimeria bifida, gen. nov., sp. nov., and Pseudoramibacter fermentans, sp. nov. Applied and Environmental Microbiology. PMID 31704684 DOI: 10.1128/Aem.02242-19  0.622
2019 Lonetto MA, Donohue TJ, Gross CA, Buttner MJ. Discovery of the Extracytoplasmic Function σ Factors. Molecular Microbiology. PMID 31115926 DOI: 10.1111/Mmi.14307  0.537
2019 Donohue TJ. Shedding light on a Group IV (ECF11) alternative σ factor. Molecular Microbiology. PMID 31111523 DOI: 10.1111/Mmi.14280  0.322
2019 Perez JM, Kontur WS, Alherech M, Coplien J, Karlen SD, Stahl SS, Donohue TJ, Noguera DR. Funneling aromatic products of chemically depolymerized lignin into 2-pyrone-4-6-dicarboxylic acid with Novosphingobium aromaticivorans Green Chemistry. 21: 1340-1350. DOI: 10.1039/C8Gc03504K  0.776
2018 Kontur WS, Olmsted CN, Yusko LM, Niles AV, Walters KA, Beebe ET, Vander Meulen KA, Karlen SD, Gall DL, Noguera DR, Donohue TJ. A heterodimeric glutathione S-transferase that stereospecifically breaks lignin's β()-aryl ether bond reveals the diversity of bacterial β-etherases. The Journal of Biological Chemistry. PMID 30541921 DOI: 10.1074/Jbc.Ra118.006548  0.768
2018 Scarborough MJ, Lawson CE, Hamilton JJ, Donohue TJ, Noguera DR. Metatranscriptomic and Thermodynamic Insights into Medium-Chain Fatty Acid Production Using an Anaerobic Microbiome. Msystems. 3. PMID 30505946 DOI: 10.1128/mSystems.00221-18  0.585
2018 Scarborough MJ, Lynch G, Dickson M, McGee M, Donohue TJ, Noguera DR. Increasing the economic value of lignocellulosic stillage through medium-chain fatty acid production. Biotechnology For Biofuels. 11: 200. PMID 30034526 DOI: 10.1186/S13068-018-1193-X  0.565
2018 Kontur WS, Bingman CA, Olmsted CN, Wassarman DR, Ulbrich A, Gall DL, Smith RW, Yusko LM, Fox BG, Noguera DR, Coon JJ, Donohue TJ. uses a Nu-class glutathione-S-transferase as a glutathione lyase in breaking the β-aryl ether bond of lignin. The Journal of Biological Chemistry. PMID 29449375 DOI: 10.1074/Jbc.Ra117.001268  0.769
2017 Gall DL, Kontur WS, Lan W, Kim H, Li Y, Ralph J, Donohue TJ, Noguera DR. In vitro enzymatic depolymerization of lignin with release of syringyl, guaiacyl, and tricin units. Applied and Environmental Microbiology. PMID 29180366 DOI: 10.1128/Aem.02076-17  0.787
2017 Burger BT, Imam S, Scarborough MJ, Noguera DR, Donohue TJ. Combining Genome-Scale Experimental and Computational Methods To Identify Essential Genes in Rhodobacter sphaeroides. Msystems. 2. PMID 28744485 DOI: 10.1128/mSystems.00015-17  0.797
2017 Lemmer KC, Zhang W, Langer SJ, Dohnalkova AC, Hu D, Lemke RA, Piotrowski JS, Orr G, Noguera DR, Donohue TJ. Mutations That Alter the Bacterial Cell Envelope Increase Lipid Production. Mbio. 8. PMID 28536286 DOI: 10.1128/Mbio.00513-17  0.786
2017 Gall DL, Ralph J, Donohue TJ, Noguera DR. Biochemical transformation of lignin for deriving valued commodities from lignocellulose. Current Opinion in Biotechnology. 45: 120-126. PMID 28346893 DOI: 10.1016/J.Copbio.2017.02.015  0.781
2016 Pereira JH, Heins RA, Gall DL, McAndrew RP, Deng K, Holland KC, Donohue TJ, Noguera DR, Simmons BA, Sale KL, Ralph J, Adams PD. Structural and Biochemical Characterization of the Early and Late Enzymes in the Lignin β-aryl Ether Cleavage Pathway from Sphingobium sp SYK-6. The Journal of Biological Chemistry. PMID 26940872 DOI: 10.1074/Jbc.M115.700427  0.797
2016 Spero MA, Brickner JR, Mollet JT, Pisithkul T, Amador-Noguez D, Donohue TJ. Different Functions of Phylogenetically Distinct Bacterial Complex I Isozymes. Journal of Bacteriology. PMID 26833419 DOI: 10.1128/Jb.01025-15  0.783
2015 Helmich KE, Pereira JH, Gall DL, Heins RA, McAndrew RP, Bingman CA, Deng K, Holland KC, Noguera DR, Simmons BA, Sale KL, Ralph J, Donohue TJ, Adams PD, Phillips GN. Structural basis of stereospecificity in the bacterial enzymatic cleavage of β-aryl ether bonds in lignin. The Journal of Biological Chemistry. PMID 26637355 DOI: 10.1074/Jbc.M115.694307  0.794
2015 Lin TY, Santos TM, Kontur WS, Donohue TJ, Weibel DB. A Cardiolipin-Deficient Mutant of Rhodobacter sphaeroides Has an Altered Cell Shape and Is Impaired in Biofilm Formation. Journal of Bacteriology. 197: 3446-55. PMID 26283770 DOI: 10.1128/Jb.00420-15  0.754
2015 Austin S, Kontur WS, Ulbrich A, Oshlag JZ, Zhang W, Higbee A, Zhang Y, Coon JJ, Hodge DB, Donohue TJ, Noguera DR. Metabolism of multiple aromatic compounds in corn stover hydrolysate by Rhodopseudomonas palustris. Environmental Science & Technology. PMID 26121369 DOI: 10.1021/Acs.Est.5B02062  0.794
2015 Spero MA, Aylward FO, Currie CR, Donohue TJ. Phylogenomic analysis and predicted physiological role of the proton-translocating NADH:quinone oxidoreductase (complex I) across bacteria. Mbio. 6. PMID 25873378 DOI: 10.1128/Mbio.00389-15  0.795
2015 Lemmer KC, Dohnalkova AC, Noguera DR, Donohue TJ. Oxygen-dependent regulation of bacterial lipid production. Journal of Bacteriology. 197: 1649-58. PMID 25733615 DOI: 10.1128/Jb.02510-14  0.79
2015 Imam S, Noguera DR, Donohue TJ. An integrated approach to reconstructing genome-scale transcriptional regulatory networks. Plos Computational Biology. 11: e1004103. PMID 25723545 DOI: 10.1371/Journal.Pcbi.1004103  0.799
2015 Imam S, Noguera DR, Donohue TJ. CceR and AkgR regulate central carbon and energy metabolism in alphaproteobacteria. Mbio. 6. PMID 25650399 DOI: 10.1128/Mbio.02461-14  0.807
2015 Imam S, Fitzgerald CM, Cook EM, Donohue TJ, Noguera DR. Quantifying the effects of light intensity on bioproduction and maintenance energy during photosynthetic growth of Rhodobacter sphaeroides. Photosynthesis Research. 123: 167-82. PMID 25428581 DOI: 10.1007/S11120-014-0061-1  0.777
2015 Zhang W, Lemmer KC, Donohue TJ, Noguera DR. Maximizing fatty acid production by Rhodobacter sphaeroides grown on corn stover hydrolysate Proceedings of the Water Environment Federation. 2015: 1-5. DOI: 10.2175/193864715819558884  0.769
2014 Imam S, Noguera DR, Donohue TJ. Global analysis of photosynthesis transcriptional regulatory networks. Plos Genetics. 10: e1004837. PMID 25503406 DOI: 10.1371/Journal.Pgen.1004837  0.809
2014 Gall DL, Ralph J, Donohue TJ, Noguera DR. A group of sequence-related sphingomonad enzymes catalyzes cleavage of β-aryl ether linkages in lignin β-guaiacyl and β-syringyl ether dimers. Environmental Science & Technology. 48: 12454-63. PMID 25232892 DOI: 10.1021/Es503886D  0.777
2014 Kyrpides NC, Hugenholtz P, Eisen JA, Woyke T, Göker M, Parker CT, Amann R, Beck BJ, Chain PS, Chun J, Colwell RR, Danchin A, Dawyndt P, Dedeurwaerdere T, DeLong EF, ... ... Donohue TJ, et al. Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains. Plos Biology. 12: e1001920. PMID 25093819 DOI: 10.1371/Journal.Pbio.1001920  0.327
2014 Lemke RA, Peterson AC, Ziegelhoffer EC, Westphall MS, Tjellström H, Coon JJ, Donohue TJ. Synthesis and scavenging role of furan fatty acids. Proceedings of the National Academy of Sciences of the United States of America. 111: E3450-7. PMID 25092314 DOI: 10.1073/Pnas.1405520111  0.332
2014 Lennon CW, Lemmer KC, Irons JL, Sellman MI, Donohue TJ, Gourse RL, Ross W. A Rhodobacter sphaeroides protein mechanistically similar to Escherichia coli DksA regulates photosynthetic growth. Mbio. 5: e01105-14. PMID 24781745 DOI: 10.1128/Mbio.01105-14  0.802
2014 Gall DL, Kim H, Lu F, Donohue TJ, Noguera DR, Ralph J. Stereochemical features of glutathione-dependent enzymes in the Sphingobium sp. strain SYK-6 β-aryl etherase pathway. The Journal of Biological Chemistry. 289: 8656-67. PMID 24509858 DOI: 10.1074/Jbc.M113.536250  0.777
2013 Imam S, Noguera DR, Donohue TJ. Global insights into energetic and metabolic networks in Rhodobacter sphaeroides. Bmc Systems Biology. 7: 89. PMID 24034347 DOI: 10.1186/1752-0509-7-89  0.809
2013 Gall DL, Ralph J, Donohue TJ, Noguera DR. Benzoyl coenzyme a pathway-mediated metabolism of meta-hydroxy-aromatic acids in Rhodopseudomonas palustris. Journal of Bacteriology. 195: 4112-20. PMID 23852864 DOI: 10.1128/Jb.00634-13  0.798
2013 Nam TW, Ziegelhoffer EC, Lemke RA, Donohue TJ. Proteins needed to activate a transcriptional response to the reactive oxygen species singlet oxygen. Mbio. 4: e00541-12. PMID 23300250 DOI: 10.1128/Mbio.00541-12  0.765
2012 Kontur WS, Schackwitz WS, Ivanova N, Martin J, Labutti K, Deshpande S, Tice HN, Pennacchio C, Sodergren E, Weinstock GM, Noguera DR, Donohue TJ. Revised sequence and annotation of the Rhodobacter sphaeroides 2.4.1 genome. Journal of Bacteriology. 194: 7016-7. PMID 23209255 DOI: 10.1128/Jb.01214-12  0.766
2012 Dufour YS, Donohue TJ. Signal correlations in ecological niches can shape the organization and evolution of bacterial gene regulatory networks. Advances in Microbial Physiology. 61: 1-36. PMID 23046950 DOI: 10.1016/B978-0-12-394423-8.00001-9  0.758
2012 Dufour YS, Imam S, Koo BM, Green HA, Donohue TJ. Convergence of the transcriptional responses to heat shock and singlet oxygen stresses. Plos Genetics. 8: e1002929. PMID 23028346 DOI: 10.1371/Journal.Pgen.1002929  0.788
2012 Wecke T, Halang P, Staroń A, Dufour YS, Donohue TJ, Mascher T. Extracytoplasmic function σ factors of the widely distributed group ECF41 contain a fused regulatory domain. Microbiologyopen. 1: 194-213. PMID 22950025 DOI: 10.1002/mbo3.22  0.752
2012 Kim MS, Dufour YS, Yoo JS, Cho YB, Park JH, Nam GB, Kim HM, Lee KL, Donohue TJ, Roe JH. Conservation of thiol-oxidative stress responses regulated by SigR orthologues in actinomycetes. Molecular Microbiology. 85: 326-44. PMID 22651816 DOI: 10.1111/J.1365-2958.2012.08115.X  0.754
2012 Kontur WS, Noguera DR, Donohue TJ. Maximizing reductant flow into microbial H2 production. Current Opinion in Biotechnology. 23: 382-9. PMID 22036711 DOI: 10.1016/J.Copbio.2011.10.003  0.785
2011 Kontur WS, Ziegelhoffer EC, Spero MA, Imam S, Noguera DR, Donohue TJ. Pathways involved in reductant distribution during photobiological H(2) production by Rhodobacter sphaeroides. Applied and Environmental Microbiology. 77: 7425-9. PMID 21856820 DOI: 10.1128/Aem.05273-11  0.773
2011 Imam S, Yilmaz S, Sohmen U, Gorzalski AS, Reed JL, Noguera DR, Donohue TJ. iRsp1095: a genome-scale reconstruction of the Rhodobacter sphaeroides metabolic network. Bmc Systems Biology. 5: 116. PMID 21777427 DOI: 10.1186/1752-0509-5-116  0.809
2011 Greenwell R, Nam TW, Donohue TJ. Features of Rhodobacter sphaeroides ChrR required for stimuli to promote the dissociation of σ(E)/ChrR complexes. Journal of Molecular Biology. 407: 477-91. PMID 21295582 DOI: 10.1016/J.Jmb.2011.01.055  0.776
2010 Suen G, Scott JJ, Aylward FO, Adams SM, Tringe SG, Pinto-Tomás AA, Foster CE, Pauly M, Weimer PJ, Barry KW, Goodwin LA, Bouffard P, Li L, Osterberger J, Harkins TT, ... ... Donohue TJ, et al. An insect herbivore microbiome with high plant biomass-degrading capacity. Plos Genetics. 6: e1001129. PMID 20885794 DOI: 10.1371/Journal.Pgen.1001129  0.314
2010 Dufour YS, Kiley PJ, Donohue TJ. Reconstruction of the core and extended regulons of global transcription factors. Plos Genetics. 6: e1001027. PMID 20661434 DOI: 10.1371/Journal.Pgen.1001027  0.76
2010 Dufour YS, Wesenberg GE, Tritt AJ, Glasner JD, Perna NT, Mitchell JC, Donohue TJ. chipD: a web tool to design oligonucleotide probes for high-density tiling arrays. Nucleic Acids Research. 38: W321-5. PMID 20529880 DOI: 10.1093/Nar/Gkq517  0.726
2010 Wang Y, Dufour YS, Carlson HK, Donohue TJ, Marletta MA, Ruby EG. H-NOX-mediated nitric oxide sensing modulates symbiotic colonization by Vibrio fischeri. Proceedings of the National Academy of Sciences of the United States of America. 107: 8375-80. PMID 20404170 DOI: 10.1073/Pnas.1003571107  0.757
2010 Yilmaz LS, Kontur WS, Sanders AP, Sohmen U, Donohue TJ, Noguera DR. Electron partitioning during light- and nutrient-powered hydrogen production by Rhodobacter sphaeroides Bioenergy Research. 3: 55-66. DOI: 10.1007/S12155-009-9072-8  0.776
2009 Donohue TJ. Targeted sigma factor turnover inserts negative control into a positive feedback loop. Molecular Microbiology. 73: 747-50. PMID 19682265 DOI: 10.1111/J.1365-2958.2009.06823.X  0.312
2008 Gomelsky L, Moskvin OV, Stenzel RA, Jones DF, Donohue TJ, Gomelsky M. Hierarchical regulation of photosynthesis gene expression by the oxygen-responsive PrrBA and AppA-PpsR systems of Rhodobacter sphaeroides. Journal of Bacteriology. 190: 8106-14. PMID 18931128 DOI: 10.1128/Jb.01094-08  0.391
2008 Dufour YS, Landick R, Donohue TJ. Organization and evolution of the biological response to singlet oxygen stress. Journal of Molecular Biology. 383: 713-30. PMID 18723027 DOI: 10.1016/J.Jmb.2008.08.017  0.791
2008 Du X, Callister SJ, Manes NP, Adkins JN, Alexandridis RA, Zeng X, Roh JH, Smith WE, Donohue TJ, Kaplan S, Smith RD, Lipton MS. A computational strategy to analyze label-free temporal bottom-up proteomics data. Journal of Proteome Research. 7: 2595-604. PMID 18442284 DOI: 10.1021/Pr0704837  0.767
2008 Wilson SM, Gleisten MP, Donohue TJ. Identification of proteins involved in formaldehyde metabolism by Rhodobacter sphaeroides. Microbiology (Reading, England). 154: 296-305. PMID 18174148 DOI: 10.1099/Mic.0.2007/011346-0  0.584
2008 Cho YK, Donohue TJ, Tejedor I, Anderson MA, McMahon KD, Noguera DR. Development of a solar-powered microbial fuel cell. Journal of Applied Microbiology. 104: 640-50. PMID 17927750 DOI: 10.1111/J.1365-2672.2007.03580.X  0.675
2007 Campbell EA, Greenwell R, Anthony JR, Wang S, Lim L, Das K, Sofia HJ, Donohue TJ, Darst SA. A conserved structural module regulates transcriptional responses to diverse stress signals in bacteria. Molecular Cell. 27: 793-805. PMID 17803943 DOI: 10.1016/J.Molcel.2007.07.009  0.779
2007 Zeng X, Roh JH, Callister SJ, Tavano CL, Donohue TJ, Lipton MS, Kaplan S. Proteomic characterization of the Rhodobacter sphaeroides 2.4.1 photosynthetic membrane: identification of new proteins. Journal of Bacteriology. 189: 7464-74. PMID 17704227 DOI: 10.1128/Jb.00946-07  0.782
2006 Tavano CL, Donohue TJ. Development of the bacterial photosynthetic apparatus. Current Opinion in Microbiology. 9: 625-31. PMID 17055774 DOI: 10.1016/J.Mib.2006.10.005  0.789
2006 Callister SJ, Dominguez MA, Nicora CD, Zeng X, Tavano CL, Kaplan S, Donohue TJ, Smith RD, Lipton MS. Application of the accurate mass and time tag approach to the proteome analysis of sub-cellular fractions obtained from Rhodobacter sphaeroides 2.4.1. Aerobic and photosynthetic cell cultures. Journal of Proteome Research. 5: 1940-7. PMID 16889416 DOI: 10.1021/Pr060050O  0.783
2006 Green HA, Donohue TJ. Activity of Rhodobacter sphaeroides RpoHII, a second member of the heat shock sigma factor family. Journal of Bacteriology. 188: 5712-21. PMID 16885439 DOI: 10.1128/Jb.00405-06  0.668
2006 Callister SJ, Nicora CD, Zeng X, Roh JH, Dominguez MA, Tavano CL, Monroe ME, Kaplan S, Donohue TJ, Smith RD, Lipton MS. Comparison of aerobic and photosynthetic Rhodobacter sphaeroides 2.4.1 proteomes. Journal of Microbiological Methods. 67: 424-36. PMID 16828186 DOI: 10.1016/J.Mimet.2006.04.021  0.793
2006 Ranson-Olson B, Jones DF, Donohue TJ, Zeilstra-Ryalls JH. In vitro and in vivo analysis of the role of PrrA in Rhodobacter sphaeroides 2.4.1 hemA gene expression. Journal of Bacteriology. 188: 3208-18. PMID 16621813 DOI: 10.1128/Jb.188.9.3208-3218.2006  0.39
2005 Jones DF, Stenzel RA, Donohue TJ. Mutational analysis of the C-terminal domain of the Rhodobacter sphaeroides response regulator PrrA. Microbiology (Reading, England). 151: 4103-10. PMID 16339955 DOI: 10.1099/Mic.0.28300-0  0.367
2005 Tavano CL, Podevels AM, Donohue TJ. Identification of genes required for recycling reducing power during photosynthetic growth. Journal of Bacteriology. 187: 5249-58. PMID 16030219 DOI: 10.1128/Jb.187.15.5249-5258.2005  0.792
2005 Anthony JR, Warczak KL, Donohue TJ. A transcriptional response to singlet oxygen, a toxic byproduct of photosynthesis. Proceedings of the National Academy of Sciences of the United States of America. 102: 6502-7. PMID 15855269 DOI: 10.1073/Pnas.0502225102  0.354
2004 Hickman JW, Witthuhn VC, Dominguez M, Donohue TJ. Positive and negative transcriptional regulators of glutathione-dependent formaldehyde metabolism. Journal of Bacteriology. 186: 7914-25. PMID 15547263 DOI: 10.1128/Jb.186.23.7914-7925.2004  0.723
2004 Anthony JR, Newman JD, Donohue TJ. Interactions between the Rhodobacter sphaeroides ECF sigma factor, sigma(E), and its anti-sigma factor, ChrR. Journal of Molecular Biology. 341: 345-60. PMID 15276828 DOI: 10.1016/J.Jmb.2004.06.018  0.555
2004 Tavano CL, Comolli JC, Donohue TJ. The role of dor gene products in controlling the P2 promoter of the cytochrome c2 gene, cycA, in Rhodobacter sphaeroides. Microbiology (Reading, England). 150: 1893-9. PMID 15184575 DOI: 10.1099/Mic.0.26971-0  0.796
2004 Comolli JC, Donohue TJ. Differences in two Pseudomonas aeruginosa cbb3 cytochrome oxidases. Molecular Microbiology. 51: 1193-203. PMID 14763990 DOI: 10.1046/J.1365-2958.2003.03904.X  0.77
2003 Anthony JR, Green HA, Donohue TJ. Purification of Rhodobacter sphaeroides RNA polymerase and its sigma factors. Methods in Enzymology. 370: 54-65. PMID 14712633 DOI: 10.1016/S0076-6879(03)70005-6  0.67
2003 Zhou S, Kvikstad E, Kile A, Severin J, Forrest D, Runnheim R, Churas C, Hickman JW, Mackenzie C, Choudhary M, Donohue T, Kaplan S, Schwartz DC. Whole-genome shotgun optical mapping of Rhodobacter sphaeroides strain 2.4.1 and its use for whole-genome shotgun sequence assembly. Genome Research. 13: 2142-51. PMID 12952882 DOI: 10.1101/Gr.1128803  0.724
2003 Rios-Velazquez C, Coller R, Donohue TJ. Features of Rhodobacter sphaeroides CcmFH. Journal of Bacteriology. 185: 422-31. PMID 12511487 DOI: 10.1128/Jb.185.2.422-431.2003  0.744
2003 Donohue TJ, Anthony JR, Newman J. The role of zinc in function of the Rhodobacter sphaeroides anti-sigma factor ChrR Journal of Inorganic Biochemistry. 96: 77. DOI: 10.1016/S0162-0134(03)80534-2  0.509
2002 Comolli JC, Donohue TJ. Pseudomonas aeruginosa RoxR, a response regulator related to Rhodobacter sphaeroides PrrA, activates expression of the cyanide-insensitive terminal oxidase. Molecular Microbiology. 45: 755-68. PMID 12139621 DOI: 10.1046/J.1365-2958.2002.03046.X  0.778
2002 Hickman JW, Barber RD, Skaar EP, Donohue TJ. Link between the membrane-bound pyridine nucleotide transhydrogenase and glutathione-dependent processes in Rhodobacter sphaeroides. Journal of Bacteriology. 184: 400-9. PMID 11751816 DOI: 10.1128/Jb.184.2.400-409.2002  0.777
2002 Comolli JC, Carl AJ, Hall C, Donohue T. Transcriptional activation of the Rhodobacter sphaeroides cytochrome c2 gene P2 promoter by the response regulator PrrA Journal of Bacteriology. 184: 390-399. PMID 11751815 DOI: 10.1128/Jb.184.2.390-399.2002  0.777
2001 Newman JD, Anthony JR, Donohue TJ. The importance of zinc-binding to the function of Rhodobacter sphaeroides ChrR as an anti-sigma factor. Journal of Molecular Biology. 313: 485-99. PMID 11676534 DOI: 10.1006/Jmbi.2001.5069  0.578
2001 Cox RL, Patterson C, Donohue TJ. Roles for the Rhodobacter sphaeroides CcmA and CcmG proteins. Journal of Bacteriology. 183: 4643-7. PMID 11443100 DOI: 10.1128/Jb.183.15.4643-4647.2001  0.646
2001 Ríos-Velázquez C, Cox RL, Donohue TJ. Characterization of Rhodobacter sphaeroides cytochrome c(2) proteins with altered heme attachment sites. Archives of Biochemistry and Biophysics. 389: 234-44. PMID 11339813 DOI: 10.1006/Abbi.2001.2330  0.784
2001 Mackenzie C, Choudhary M, Larimer FW, Predki PF, Stilwagen S, Armitage JP, Barber RD, Donohue TJ, Hosler JP, Newman JE, Shapleigh JP, Sockett RE, Zeilstra-Ryalls J, Kaplan S. The home stretch, a first analysis of the nearly completed genome of Rhodobacter sphaeroides 2.4.1 Photosynthesis Research. 70: 19-41. DOI: 10.1023/A:1013831823701  0.633
1999 Newman JD, Falkowski MJ, Schilke BA, Anthony LC, Donohue TJ. The Rhodobacter sphaeroides ECF sigma factor, sigma(E), and the target promoters cycA P3 and rpoE P1. Journal of Molecular Biology. 294: 307-20. PMID 10610760 DOI: 10.1006/Jmbi.1999.3263  0.554
1999 Karls RK, Wolf JR, Donohue TJ. Activation of the cycA P2 promoter for the Rhodobacter sphaeroides cytochrome c2 gene by the photosynthesis response regulator Molecular Microbiology. 34: 822-835. PMID 10564521 DOI: 10.1046/J.1365-2958.1999.01649.X  0.335
1999 He Y, Gaal T, Karls R, Donohue TJ, Gourse RL, Roberts GP. Transcription activation by CooA, the CO-sensing factor from Rhodospirillum rubrum: The interaction between CooA and the C-terminal domain of the α subunit of RNA polymerase Journal of Biological Chemistry. 274: 10840-10845. PMID 10196160 DOI: 10.1074/Jbc.274.16.10840  0.792
1998 Barber RD, Donohue TJ. Pathways for transcriptional activation of a glutathione-dependent formaldehyde dehydrogenase gene Journal of Molecular Biology. 280: 775-784. PMID 9671549 DOI: 10.1006/Jmbi.1998.1900  0.637
1998 Barber RD, Donohue TJ. Function of a glutathione-dependent formaldehyde dehydrogenase in Rhodobacter sphaeroides formaldehyde oxidation and assimilation Biochemistry. 37: 530-537. PMID 9425073 DOI: 10.1021/Bi971463T  0.603
1998 Karls RK, Brooks J, Rossmeissl P, Luedke J, Donohue TJ. Metabolic roles of a Rhodobacter sphaeroides member of the σ32 family Journal of Bacteriology. 180: 10-19. PMID 9422586 DOI: 10.1128/Jb.180.1.10-19.1998  0.343
1998 Macgregor BJ, Karls RK, Donohue TJ. Transcription of the Rhodobacter sphaeroides cycA P1 promoter by alternate RNA polymerase holoenzymes Journal of Bacteriology. 180: 1-9. PMID 9422585 DOI: 10.1128/Jb.180.1.1-9.1998  0.691
1997 Flory JE, Donohue TJ. Transcriptional control of several aerobically induced cytochrome structural genes in Rhodobacter sphaeroides Microbiology (Reading, England). 143. PMID 9353915 DOI: 10.1099/00221287-143-10-3101  0.655
1996 Barber RD, Rott MA, Donohue TJ. Characterization of a glutathione-dependent formaldehyde dehydrogenase from Rhodobacter sphaeroides Journal of Bacteriology. 178: 1386-1393. PMID 8631716 DOI: 10.1128/Jb.178.5.1386-1393.1996  0.622
1995 Schilke BA, Donohue TJ. ChrR positively regulates transcription of the Rhodobacter sphaeroides cytochrome c2 gene Journal of Bacteriology. 177: 1929-1937. PMID 7721683 DOI: 10.1128/Jb.177.8.1929-1937.1995  0.373
1995 Flory JE, Donohue TJ. Organization and expression of the Rhodobacter sphaeroides cycFG operon Journal of Bacteriology. 177: 4311-4320. PMID 7543472 DOI: 10.1128/Jb.177.15.4311-4320.1995  0.647
1993 Mecsas J, Rouviere PE, Erickson JW, Donohue TJ, Gross CA. The activity of σE, an Escherichia coli heat-inducible σ-factor, is modulated by expression of outer membrane proteins Genes and Development. 7: 2618-2628. PMID 8276244 DOI: 10.1101/Gad.7.12B.2618  0.551
1992 Schilke BA, Donohue TJ. δ-Aminolevulinate couples cycA transcription to changes in heme availability in Rhodobacter sphaeroides Journal of Molecular Biology. 226: 101-115. PMID 1320126 DOI: 10.1016/0022-2836(92)90127-6  0.385
1991 Wu YQ, MacGregor BJ, Donohue TJ, Kaplan S, Yen B. Genetic and physical mapping of the Rhodobacter sphaeroides photosynthetic gene cluster from R-prime pWS2 Plasmid. 25: 163-176. PMID 1924554 DOI: 10.1016/0147-619X(91)90010-T  0.744
1991 Brandner JP, Stabb EV, Temme R, Donohue TJ. Regions of Rhodobacter sphaeroides cytochrome c2 required for export, heme attachment, and function Journal of Bacteriology. 173: 3958-3965. PMID 1648073 DOI: 10.1128/Jb.173.13.3958-3965.1991  0.324
1991 MacGregor BJ, Donohue TJ. Evidence for two promoters for the cytochrome c2 gene (cycA) of Rhodobacter sphaeroides Journal of Bacteriology. 173: 3949-3957. PMID 1648072 DOI: 10.1128/Jb.173.13.3949-3957.1991  0.71
1989 Sockett RE, Donohue TJ, Varga AR, Kaplan S. Control of photosynthetic membrane assembly in Rhodobacter sphaeroides mediated by puhA and flanking sequences Journal of Bacteriology. 171: 436-446. PMID 2644200 DOI: 10.1128/Jb.171.1.436-446.1989  0.531
1989 McEwan AG, Kaplan S, Donohue TJ. Synthesis of Rhodobacter sphaeroides cytochrome c2 in Escherichia coli Fems Microbiology Letters. 59: 253-258. PMID 2547689 DOI: 10.1111/J.1574-6968.1989.Tb03120.X  0.505
1989 Brandner JP, McEwan AG, Kaplan S, Donohue TJ. Expression of the Rhodobacter sphaeroides cytochrome c2 structural gene Journal of Bacteriology. 171: 360-368. PMID 2536660 DOI: 10.1128/Jb.171.1.360-368.1989  0.532
1988 Davis J, Donohue TJ, Kaplan S. Construction, characterization, and complementation of a Puf- mutant of Rhodobacter sphaeroides Journal of Bacteriology. 170: 320-329. PMID 3257209 DOI: 10.1128/Jb.170.1.320-329.1988  0.51
1988 Donohue TJ, McEwan AG, Van Doren S, Crofts AR, Kaplan S. Phenotypic and genetic characterization of cytochrome c2 deficient mutants of Rhodobacter sphaeroides. Biochemistry. 27: 1918-25. PMID 2837274 DOI: 10.1021/Bi00406A018  0.511
1988 DeHoff BS, Lee JK, Donohue TJ, Gumport RI, Kaplan S. In vivo analysis of puf operon expression in Rhodobacter sphaeroides after deletion of a putative intercistronic transcription terminator. Journal of Bacteriology. 170: 4681-92. PMID 2459108 DOI: 10.1128/Jb.170.10.4681-4692.1988  0.516
1988 Donohue TJ, Kiley PJ, Kaplan S. The puf operon region of Rhodobacter sphaeroides Photosynthesis Research. 19: 39-61. DOI: 10.1007/Bf00114568  0.549
1987 Kiley PJ, Donohue TJ, Havelka WA, Kaplan S. DNA sequence and in vitro expression of the B875 light-harvesting polypeptides of Rhodobacter sphaeroides Journal of Bacteriology. 169: 742-750. PMID 3027044 DOI: 10.1128/Jb.169.2.742-750.1987  0.517
1986 Donohue TJ, McEwan AG, Kaplan S. Cloning, DNA sequence, and expression of the Rhodobacter sphaeroides cytochrome c2 gene Journal of Bacteriology. 168: 962-972. PMID 3023293 DOI: 10.1128/Jb.168.2.962-972.1986  0.553
1986 Donohue TJ, Hoger JH, Kaplan S. Cloning and expression of the Rhodobacter sphaeroides reaction center H gene Journal of Bacteriology. 168: 953-961. PMID 3023292 DOI: 10.1128/Jb.168.2.953-961.1986  0.529
1985 Donohue TJ, Chory J, Goldsand TE, Lynn SP, Kaplan S. Structure and physical map of Rhodopseudomonas sphaeroides bacteriophage RS1 DNA. Journal of Virology. 55: 147-57. PMID 2989552 DOI: 10.1128/Jvi.55.1.147-157.1985  0.594
1984 Chory J, Donohue TJ, Varga AR, Staehelin LA, Kaplan S. Induction of the photosynthetic membranes of Rhodopseudomonas sphaeroides: biochemical and morphological studies. Journal of Bacteriology. 159: 540-54. PMID 6611335 DOI: 10.1128/Jb.159.2.540-554.1984  0.649
1983 Kaplan S, Cain BD, Donohue TJ, Shepherd WD, Yen GS. Biosynthesis of the photosynthetic membranes of Rhodopseudomonas sphaeroides Journal of Cellular Biochemistry. 22: 15-29. PMID 6607927 DOI: 10.1002/Jcb.240220103  0.489
1983 Cain BD, Singer M, Donohue TJ, Kaplan S. In vivo metabolic intermediates of phospholipid biosynthesis in Rhodopseudomonas sphaeroides Journal of Bacteriology. 156: 375-385. PMID 6604726 DOI: 10.1128/Jb.156.1.375-385.1983  0.53
1983 Cain BD, Singer M, Donohue TJ, Kaplan S. In vivo metabolic intermediates of phospholipid biosynthesis in Rhodopseudomonas sphaeroides. Journal of Bacteriology. 156: 375-385. DOI: 10.1128/jb.156.1.375-385.1983  0.43
1982 Donohue TJ, Cain BD, Kaplan S. Alterations in the phospholipid composition of Rhodopseudomonas sphaeroides and other bacteria induced by Tris Journal of Bacteriology. 152: 595-606. PMID 6982264  0.394
1982 Donohue TJ, Cain BD, Kaplan S. Purification and characterization of an N-acylphosphatidylserine from Rhodopseudomonas sphaeroides Biochemistry. 21: 2765-2773. PMID 6980013 DOI: 10.1021/Bi00540A029  0.492
1978 Donohue TJ, Bernlohr RW. Effect of cultural conditions on the concentrations of metabolic intermediates during growth and sporulation of Bacillus licheniformis Journal of Bacteriology. 135: 363-372. PMID 681276 DOI: 10.1128/Jb.135.2.363-372.1978  0.333
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