Lisa Alvarez-Cohen - Publications

University of California, Berkeley, Berkeley, CA 
Environmental Engineering, Microbiology Biology

124 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Gushgari-Doyle S, Oremland RS, Keren R, Baesman SM, Akob DM, Banfield JF, Alvarez-Cohen L. Acetylene-Fueled Trichloroethene Reductive Dechlorination in a Groundwater Enrichment Culture. Mbio. 12. PMID 33531396 DOI: 10.1128/mBio.02724-20  1
2021 Zhou L, Wang H, Zhang Z, Zhang J, Chen H, Bi X, Dai X, Xia S, Alvarez-Cohen L, Rittmann BE. Novel perspective for urban water resource management: 5R generation Frontiers of Environmental Science & Engineering in China. 15: 1-13. DOI: 10.1007/S11783-020-1308-Z  1
2020 Keren R, Lawrence JE, Zhuang W, Jenkins D, Banfield JF, Alvarez-Cohen L, Zhou L, Yu K. Increased replication of dissimilatory nitrate-reducing bacteria leads to decreased anammox bioreactor performance. Microbiome. 8: 7. PMID 31980038 DOI: 10.1186/S40168-020-0786-3  1
2020 Gushgari-Doyle S, Alvarez-Cohen L. Effects of Arsenic on Trichloroethene-Dechlorination Activities of 195. Environmental Science & Technology. PMID 31913608 DOI: 10.1021/Acs.Est.9B06527  1
2019 Brisson VL, Zhuang WQ, Alvarez-Cohen L. Metabolomic Analysis Reveals Contributions of Citric and Citramalic Acids to Rare Earth Bioleaching by a Fungus. Frontiers in Microbiology. 10: 3008. PMID 31993037 DOI: 10.3389/Fmicb.2019.03008  1
2019 Wu L, Ning D, Zhang B, Li Y, Zhang P, Shan X, Zhang Q, Brown MR, Li Z, Van Nostrand JD, Ling F, Xiao N, Zhang Y, Vierheilig J, Wells GF, ... ... Alvarez-Cohen L, et al. Author Correction: Global diversity and biogeography of bacterial communities in wastewater treatment plants. Nature Microbiology. PMID 31728072 DOI: 10.1038/S41564-019-0617-0  1
2019 Escalas A, Hale L, Voordeckers JW, Yang Y, Firestone MK, Alvarez-Cohen L, Zhou J. Microbial functional diversity: From concepts to applications. Ecology and Evolution. 9: 12000-12016. PMID 31695904 DOI: 10.1002/Ece3.5670  1
2019 Wu L, Ning D, Zhang B, Li Y, Zhang P, Shan X, Zhang Q, Brown M, Li Z, Van Nostrand JD, Ling F, Xiao N, Zhang Y, Vierheilig J, Wells GF, ... ... Alvarez-Cohen L, et al. Global diversity and biogeography of bacterial communities in wastewater treatment plants. Nature Microbiology. PMID 31086312 DOI: 10.1038/S41564-019-0426-5  1
2019 Mao X, Stenuit B, Tremblay J, Yu K, Tringe SG, Alvarez-Cohen L. Structural dynamics and transcriptomic analysis of Dehalococcoides mccartyi within a TCE-Dechlorinating community in a completely mixed flow reactor. Water Research. 158: 146-156. PMID 31035191 DOI: 10.1016/J.Watres.2019.04.038  1
2019 Yu K, Yi S, Li B, Guo F, Peng X, Wang Z, Wu Y, Alvarez-Cohen L, Zhang T. An integrated meta-omics approach reveals substrates involved in synergistic interactions in a bisphenol A (BPA)-degrading microbial community. Microbiome. 7: 16. PMID 30728080 DOI: 10.1186/S40168-019-0634-5  1
2018 Yi S, Harding-Marjanovic KC, Houtz EF, Gao Y, Lawrence JE, Nichiporuk RV, Iavarone AT, Zhuang WQ, Hansen M, Field JA, Sedlak DL, Alvarez-Cohen L. Biotransformation of AFFF Component 6:2 Fluorotelomer Thioether Amido Sulfonate Generates 6:2 Fluorotelomer Thioether Carboxylate under Sulfate-Reducing Conditions. Environmental Science & Technology Letters. 5: 283-288. PMID 30705920 DOI: 10.1021/Acs.Estlett.8B00148  1
2018 Gu Z, Li Y, Yang Y, Xia S, Hermanowicz SW, Alvarez-Cohen L. Inhibition of anammox by sludge thermal hydrolysis and metagenomic insights. Bioresource Technology. 270: 46-54. PMID 30212773 DOI: 10.1016/J.Biortech.2018.08.132  1
2018 Ding C, Alvarez-Cohen L, He J. Growth of Dehalococcoides mccartyi species in an autotrophic consortium producing limited acetate. Biodegradation. PMID 30097751 DOI: 10.1007/S10532-018-9846-9  1
2017 Lavy A, Keren R, Yu K, Thomas BC, Alvarez-Cohen L, Banfield JF, Ilan M. A novel Chromatiales bacterium is a potential sulfide oxidizer in multiple orders of marine sponges. Environmental Microbiology. PMID 29194919 DOI: 10.1111/1462-2920.14013  1
2017 Men Y, Yu K, Bælum J, Gao Y, Tremblay J, Prestat E, Stenuit B, Tringe SG, Jansson J, Zhang T, Alvarez-Cohen L. Metagenomic and metatranscriptomic analyses reveal structure and dynamics of a dechlorinating community containing Dehalococcoides mccartyi and corrinoid-providing microorganisms under cobalamin-limited condition. Applied and Environmental Microbiology. PMID 28188205 DOI: 10.1128/Aem.03508-16  1
2017 Mao X, Polasko A, Alvarez-Cohen L. The Effects of sulfate reduction on TCE dechlorination by Dehalococcoides-containing microbial communities. Applied and Environmental Microbiology. PMID 28159790 DOI: 10.1128/Aem.03384-16  1
2017 Mao X, Oremland RS, Liu T, Gushgari S, Landers AA, Baesman SM, Alvarez-Cohen L. Acetylene fuels TCE reductive dechlorination by defined Dehalococcoides/Pelobacter consortia. Environmental Science & Technology. PMID 28075122 DOI: 10.1021/Acs.Est.6B05770  1
2017 Maes S, Zhuang WQ, Rabaey K, Alvarez-Cohen L, Hennebel T. Concomitant leaching and electrochemical extraction of Rare Earth Elements from monazite. Environmental Science & Technology. PMID 28056169 DOI: 10.1021/Acs.Est.6B03675  1
2016 Crable BR, Sieber JR, Mao X, Alvarez-Cohen L, Gunsalus R, Ogorzalek Loo RR, Nguyen H, McInerney MJ. Membrane Complexes of Syntrophomonas wolfei Involved in Syntrophic Butyrate Degradation and Hydrogen Formation. Frontiers in Microbiology. 7: 1795. PMID 27881975 DOI: 10.3389/Fmicb.2016.01795  1
2016 Harding-Marjanovic KC, Yi S, Weathers TS, Sharp JO, Sedlak DL, Alvarez-Cohen L. Effects of Aqueous Film-Forming Foams (AFFFs) on trichloroethene (TCE) dechlorination by a Dehalococcoides mccartyi-containing microbial community. Environmental Science & Technology. PMID 26894610 DOI: 10.1021/Acs.Est.5B04773  1
2016 Berg M, Stenuit B, Ho J, Wang A, Parke C, Knight M, Alvarez-Cohen L, Shapira M. Assembly of the Caenorhabditis elegans gut microbiota from diverse soil microbial environments. The Isme Journal. PMID 26800234 DOI: 10.1038/Ismej.2015.253  1
2015 Weathers TS, Harding-Marjanovic KC, Higgins CP, Alvarez-Cohen L, Sharp JO. Perfluoroalkyl acids inhibit reductive dechlorination of trichloroethene by repressing Dehalococcoides. Environmental Science & Technology. PMID 26636352 DOI: 10.1021/Acs.Est.5B04854  1
2015 Brisson VL, Zhuang WQ, Alvarez-Cohen L. Bioleaching of rare earth elements from monazite sand. Biotechnology and Bioengineering. PMID 26332985 DOI: 10.1002/Bit.25823  1
2015 Zhou L, Xia S, Alvarez-Cohen L. Structure and distribution of inorganic components in the cake layer of a membrane bioreactor treating municipal wastewater. Bioresource Technology. 196: 586-91. PMID 26298402 DOI: 10.1016/J.Biortech.2015.08.026  1
2015 Harding-Marjanovic KC, Houtz EF, Yi S, Field JA, Sedlak DL, Alvarez-Cohen L. Aerobic Biotransformation of Fluorotelomer Thioether Amido Sulfonate (Lodyne) in AFFF-Amended Microcosms. Environmental Science & Technology. 49: 7666-74. PMID 26042823 DOI: 10.1021/Acs.Est.5B01219  1
2015 Zhuang WQ, Fitts JP, Ajo-Franklin CM, Maes S, Alvarez-Cohen L, Hennebel T. Recovery of critical metals using biometallurgy. Current Opinion in Biotechnology. 33: 327-35. PMID 25912797 DOI: 10.1016/J.Copbio.2015.03.019  1
2015 Zhou J, He Z, Yang Y, Deng Y, Tringe SG, Alvarez-Cohen L. High-throughput metagenomic technologies for complex microbial community analysis: open and closed formats. Mbio. 6. PMID 25626903 DOI: 10.1128/Mbio.02288-14  1
2015 Mao X, Stenuit B, Polasko A, Alvarez-Cohen L. Efficient metabolic exchange and electron transfer within a syntrophic trichloroethene-degrading coculture of Dehalococcoides mccartyi 195 and Syntrophomonas wolfei. Applied and Environmental Microbiology. 81: 2015-24. PMID 25576615 DOI: 10.1128/Aem.03464-14  1
2015 Lee PK, Men Y, Wang S, He J, Alvarez-Cohen L. Development of a fluorescence-activated cell sorting method coupled with whole genome amplification to analyze minority and trace Dehalococcoides genomes in microbial communities. Environmental Science & Technology. 49: 1585-93. PMID 25565465 DOI: 10.1021/Es503888Y  1
2015 Zhou L, Xia S, Alvarez-Cohen L. Structure and distribution of inorganic components in the cake layer of a membrane bioreactor treating municipal wastewater Bioresource Technology. 196: 586-591. DOI: 10.1016/j.biortech.2015.08.026  1
2014 Crofts TS, Men Y, Alvarez-Cohen L, Taga ME. A bioassay for the detection of benzimidazoles reveals their presence in a range of environmental samples. Frontiers in Microbiology. 5: 592. PMID 25431570 DOI: 10.3389/Fmicb.2014.00592  1
2014 Men Y, Seth EC, Yi S, Crofts TS, Allen RH, Taga ME, Alvarez-Cohen L. Identification of specific corrinoids reveals corrinoid modification in dechlorinating microbial communities. Environmental Microbiology. PMID 24803319 DOI: 10.1111/1462-2920.12500  1
2014 Zhuang WQ, Yi S, Bill M, Brisson VL, Feng X, Men Y, Conrad ME, Tang YJ, Alvarez-Cohen L. Incomplete Wood-Ljungdahl pathway facilitates one-carbon metabolism in organohalide-respiring Dehalococcoides mccartyi. Proceedings of the National Academy of Sciences of the United States of America. 111: 6419-24. PMID 24733917 DOI: 10.1073/Pnas.1321542111  1
2014 Men Y, Seth EC, Yi S, Allen RH, Taga ME, Alvarez-Cohen L. Sustainable growth of Dehalococcoides mccartyi 195 by corrinoid salvaging and remodeling in defined lactate-fermenting consortia. Applied and Environmental Microbiology. 80: 2133-41. PMID 24463969 DOI: 10.1128/Aem.03477-13  1
2014 Mason OU, Scott NM, Gonzalez A, Robbins-Pianka A, Bælum J, Kimbrel J, Bouskill NJ, Prestat E, Borglin S, Joyner DC, Fortney JL, Jurelevicius D, Stringfellow WT, Alvarez-Cohen L, Hazen TC, et al. Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill. The Isme Journal. 8: 1464-75. PMID 24451203 DOI: 10.1038/Ismej.2013.254  1
2013 Sales CM, Grostern A, Parales JV, Parales RE, Alvarez-Cohen L. Oxidation of the cyclic ethers 1,4-dioxane and tetrahydrofuran by a monooxygenase in two Pseudonocardia species. Applied and Environmental Microbiology. 79: 7702-8. PMID 24096414 DOI: 10.1128/Aem.02418-13  1
2013 Harding KC, Lee PK, Bill M, Buscheck TE, Conrad ME, Alvarez-Cohen L. Effects of varying growth conditions on stable carbon isotope fractionation of trichloroethene (TCE) by tceA-containing Dehalococcoides mccartyi strains. Environmental Science & Technology. 47: 12342-50. PMID 24015929 DOI: 10.1021/Es402617Q  1
2013 Grostern A, Alvarez-Cohen L. RubisCO-based CO2 fixation and C1 metabolism in the actinobacterium Pseudonocardia dioxanivorans CB1190. Environmental Microbiology. 15: 3040-53. PMID 23663433 DOI: 10.1111/1462-2920.12144  1
2013 Men Y, Lee PK, Harding KC, Alvarez-Cohen L. Characterization of four TCE-dechlorinating microbial enrichments grown with different cobalamin stress and methanogenic conditions. Applied Microbiology and Biotechnology. 97: 6439-50. PMID 23640361 DOI: 10.1007/s00253-013-4896-8  1
2013 Lee PK, Cheng D, West KA, Alvarez-Cohen L, He J. Isolation of two new Dehalococcoides mccartyi strains with dissimilar dechlorination functions and their characterization by comparative genomics via microarray analysis. Environmental Microbiology. 15: 2293-305. PMID 23480482 DOI: 10.1111/1462-2920.12099  1
2013 West KA, Lee PK, Johnson DR, Zinder SH, Alvarez-Cohen L. Global gene expression of Dehalococcoides within a robust dynamic TCE-dechlorinating community under conditions of periodic substrate supply. Biotechnology and Bioengineering. 110: 1333-41. PMID 23280440 DOI: 10.1002/Bit.24819  1
2013 Mahendra S, Grostern A, Alvarez-Cohen L. The impact of chlorinated solvent co-contaminants on the biodegradation kinetics of 1,4-dioxane. Chemosphere. 91: 88-92. PMID 23237300 DOI: 10.1016/J.Chemosphere.2012.10.104  1
2012 Yi S, Seth EC, Men YJ, Stabler SP, Allen RH, Alvarez-Cohen L, Taga ME. Versatility in corrinoid salvaging and remodeling pathways supports corrinoid-dependent metabolism in Dehalococcoides mccartyi. Applied and Environmental Microbiology. 78: 7745-52. PMID 22923412 DOI: 10.1128/Aem.02150-12  1
2012 Brisson VL, West KA, Lee PK, Tringe SG, Brodie EL, Alvarez-Cohen L. Metagenomic analysis of a stable trichloroethene-degrading microbial community. The Isme Journal. 6: 1702-14. PMID 22378537 DOI: 10.1038/Ismej.2012.15  1
2012 Grostern A, Sales CM, Zhuang WQ, Erbilgin O, Alvarez-Cohen L. Glyoxylate metabolism is a key feature of the metabolic degradation of 1,4-dioxane by Pseudonocardia dioxanivorans strain CB1190. Applied and Environmental Microbiology. 78: 3298-308. PMID 22327578 DOI: 10.1128/Aem.00067-12  0.4
2012 Lee PK, Dill BD, Louie TS, Shah M, Verberkmoes NC, Andersen GL, Zinder SH, Alvarez-Cohen L. Global transcriptomic and proteomic responses of Dehalococcoides ethenogenes strain 195 to fixed nitrogen limitation. Applied and Environmental Microbiology. 78: 1424-36. PMID 22179257 DOI: 10.1128/Aem.06792-11  1
2012 Lee PK, Warnecke F, Brodie EL, Macbeth TW, Conrad ME, Andersen GL, Alvarez-Cohen L. Phylogenetic microarray analysis of a microbial community performing reductive dechlorination at a TCE-contaminated site. Environmental Science & Technology. 46: 1044-54. PMID 22091783 DOI: 10.1021/Es203005K  1
2012 Men Y, Feil H, Verberkmoes NC, Shah MB, Johnson DR, Lee PK, West KA, Zinder SH, Andersen GL, Alvarez-Cohen L. Sustainable syntrophic growth of Dehalococcoides ethenogenes strain 195 with Desulfovibrio vulgaris Hildenborough and Methanobacterium congolense: global transcriptomic and proteomic analyses. The Isme Journal. 6: 410-21. PMID 21881617 DOI: 10.1038/Ismej.2011.111  1
2011 Zhuang WQ, Yi S, Feng X, Zinder SH, Tang YJ, Alvarez-Cohen L. Selective utilization of exogenous amino acids by Dehalococcoides ethenogenes strain 195 and its effects on growth and dechlorination activity. Applied and Environmental Microbiology. 77: 7797-803. PMID 21890673 DOI: 10.1128/Aem.05676-11  1
2011 Sales CM, Mahendra S, Grostern A, Parales RE, Goodwin LA, Woyke T, Nolan M, Lapidus A, Chertkov O, Ovchinnikova G, Sczyrba A, Alvarez-Cohen L. Genome sequence of the 1,4-dioxane-degrading Pseudonocardia dioxanivorans strain CB1190. Journal of Bacteriology. 193: 4549-50. PMID 21725009 DOI: 10.1128/Jb.00415-11  1
2011 Lee PK, Cheng D, Hu P, West KA, Dick GJ, Brodie EL, Andersen GL, Zinder SH, He J, Alvarez-Cohen L. Comparative genomics of two newly isolated Dehalococcoides strains and an enrichment using a genus microarray. The Isme Journal. 5: 1014-24. PMID 21228894 DOI: 10.1038/Ismej.2010.202  1
2011 Robrock KR, Mohn WW, Eltis LD, Alvarez-Cohen L. Biphenyl and ethylbenzene dioxygenases of Rhodococcus jostii RHA1 transform PBDEs. Biotechnology and Bioengineering. 108: 313-21. PMID 20872819 DOI: 10.1002/Bit.22952  1
2010 Zeng X, Massey Simonich SL, Robrock KR, Korytár P, Alvarez-Cohen L, Barofsky DF. Application of a congener-specific debromination model to study photodebromination, anaerobic microbial debromination, and FE0 reduction of polybrominated diphenyl ethers. Environmental Toxicology and Chemistry / Setac. 29: 770-8. PMID 20821505 DOI: 10.1002/Etc.119  1
2010 Xia S, Duan L, Song Y, Li J, Piceno YM, Andersen GL, Alvarez-Cohen L, Moreno-Andrade I, Huang CL, Hermanowicz SW. Bacterial community structure in geographically distributed biological wastewater treatment reactors. Environmental Science & Technology. 44: 7391-6. PMID 20812670 DOI: 10.1021/Es101554M  1
2010 Tang KH, Feng X, Zhuang WQ, Alvarez-Cohen L, Blankenship RE, Tang YJ. Carbon flow of heliobacteria is related more to clostridia than to the green sulfur bacteria. The Journal of Biological Chemistry. 285: 35104-12. PMID 20807773 DOI: 10.1074/Jbc.M110.163303  1
2010 Sharp JO, Sales CM, Alvarez-Cohen L. Functional characterization of propane-enhanced N-nitrosodimethylamine degradation by two actinomycetales. Biotechnology and Bioengineering. 107: 924-32. PMID 20717971 DOI: 10.1002/Bit.22899  1
2009 Lee PK, He J, Zinder SH, Alvarez-Cohen L. Evidence for nitrogen fixation by "Dehalococcoides ethenogenes" strain 195. Applied and Environmental Microbiology. 75: 7551-5. PMID 19820162 DOI: 10.1128/Aem.01886-09  1
2009 Robrock KR, Coelhan M, Sedlak DL, Alvarez-Cohent L. Aerobic biotransformation of polybrominated diphenyl ethers (PBDEs) by bacterial isolates. Environmental Science & Technology. 43: 5705-11. PMID 19731666 DOI: 10.1021/Es900411K  1
2009 Fan C, Lee PK, Ng WJ, Alvarez-Cohen L, Brodie EL, Andersen GL, He J. Influence of trace erythromycin and eryhthromycin-H2O on carbon and nutrients removal and on resistance selection in sequencing batch reactors (SBRs). Applied Microbiology and Biotechnology. 85: 185-95. PMID 19727707 DOI: 10.1007/S00253-009-2201-7  1
2009 Tang YJ, Yi S, Zhuang WQ, Zinder SH, Keasling JD, Alvarez-Cohen L. Investigation of carbon metabolism in "Dehalococcoides ethenogenes" strain 195 by use of isotopomer and transcriptomic analyses. Journal of Bacteriology. 191: 5224-31. PMID 19525347 DOI: 10.1128/Jb.00085-09  1
2009 Johnson DR, Nemir A, Andersen GL, Zinder SH, Alvarez-Cohen L. Transcriptomic microarray analysis of corrinoid responsive genes in Dehalococcoides ethenogenes strain 195. Fems Microbiology Letters. 294: 198-206. PMID 19341394 DOI: 10.1111/J.1574-6968.2009.01569.X  1
2008 Zeng X, Massey Simonich SL, Robrock KR, Korytár P, Alvarez-Cohen L, Barofsky DF. Development and validation of a congener-specific photodegradation model for polybrominated diphenyl ethers. Environmental Toxicology and Chemistry / Setac. 27: 2427-35. PMID 18613751 DOI: 10.1897/07-570.1  1
2008 Robrock KR, Korytár P, Alvarez-Cohen L. Pathways for the anaerobic microbial debromination of polybrominated diphenyl ethers. Environmental Science & Technology. 42: 2845-52. PMID 18497133 DOI: 10.1021/Es0720917  1
2008 West KA, Johnson DR, Hu P, DeSantis TZ, Brodie EL, Lee PK, Feil H, Andersen GL, Zinder SH, Alvarez-Cohen L. Comparative genomics of "Dehalococcoides ethenogenes" 195 and an enrichment culture containing unsequenced "Dehalococcoides" strains. Applied and Environmental Microbiology. 74: 3533-40. PMID 18359838 DOI: 10.1128/Aem.01835-07  1
2008 Lee PK, Macbeth TW, Sorenson KS, Deeb RA, Alvarez-Cohen L. Quantifying genes and transcripts to assess the in situ physiology of "Dehalococcoides" spp. in a trichloroethene-contaminated groundwater site. Applied and Environmental Microbiology. 74: 2728-39. PMID 18326677 DOI: 10.1128/Aem.02199-07  1
2008 Johnson DR, Brodie EL, Hubbard AE, Andersen GL, Zinder SH, Alvarez-Cohen L. Temporal transcriptomic microarray analysis of "Dehalococcoides ethenogenes" strain 195 during the transition into stationary phase. Applied and Environmental Microbiology. 74: 2864-72. PMID 18310438 DOI: 10.1128/Aem.02208-07  1
2008 Alvarez-Cohen L, Robrock KR. Microbial degradation of polybrominated diphenyl ethers (PBDEs) Report - University of California Water Resources Center. 33-34.  1
2007 Mahendra S, Petzold CJ, Baidoo EE, Keasling JD, Alvarez-Cohen L. Identification of the intermediates of in vivo oxidation of 1 ,4-dioxane by monooxygenase-containing bacteria. Environmental Science & Technology. 41: 7330-6. PMID 18044507 DOI: 10.1021/Es0705745  1
2007 Sharp JO, Sales CM, LeBlanc JC, Liu J, Wood TK, Eltis LD, Mohn WW, Alvarez-Cohen L. An inducible propane monooxygenase is responsible for N-nitrosodimethylamine degradation by Rhodococcus sp. strain RHA1. Applied and Environmental Microbiology. 73: 6930-8. PMID 17873074 DOI: 10.1128/Aem.01697-07  1
2007 Lee PK, Conrad ME, Alvarez-Cohen L. Stable carbon isotope fractionation of chloroethenes by dehalorespiring isolates. Environmental Science & Technology. 41: 4277-85. PMID 17626425 DOI: 10.1021/Es062763D  1
2007 He J, Holmes VF, Lee PK, Alvarez-Cohen L. Influence of vitamin B12 and cocultures on the growth of Dehalococcoides isolates in defined medium. Applied and Environmental Microbiology. 73: 2847-53. PMID 17337553 DOI: 10.1128/Aem.02574-06  1
2007 Alvarez-Cohen L, Robrock K. Anaerobic microbial debromination of Polybrominated Diphenyl Ethers (PBDEs) Report - University of California Water Resources Center. 35-36.  1
2007 Holmes VF, Alvarez-Cohen L, Clayton W. Why Dehalococcoides 16S isn't enough to predict bioremediation of PCE or TCE Battelle Press - 9th International in Situ and On-Site Bioremediation Symposium 2007. 1: 605-614.  1
2007 Macbeth TW, Lee MH, Sorenson KS, Lee P, Alvarez-Cohen L, Annable M, Deeb R, Lynch K. Performance assessment of enhanced bioremediation of DNAPLs using innovative techniques Battelle Press - 9th International in Situ and On-Site Bioremediation Symposium 2007. 2.  1
2006 Mahendra S, Alvarez-Cohen L. Kinetics of 1,4-dioxane biodegradation by monooxygenase-expressing bacteria. Environmental Science & Technology. 40: 5435-42. PMID 16999122 DOI: 10.1021/Es060714V  1
2006 Lee PK, Johnson DR, Holmes VF, He J, Alvarez-Cohen L. Reductive dehalogenase gene expression as a biomarker for physiological activity of Dehalococcoides spp. Applied and Environmental Microbiology. 72: 6161-8. PMID 16957242 DOI: 10.1128/Aem.01070-06  1
2006 Holmes VF, He J, Lee PK, Alvarez-Cohen L. Discrimination of multiple Dehalococcoides strains in a trichloroethene enrichment by quantification of their reductive dehalogenase genes. Applied and Environmental Microbiology. 72: 5877-83. PMID 16957207 DOI: 10.1128/Aem.00516-06  1
2006 He J, Robrock KR, Alvarez-Cohen L. Microbial reductive debromination of polybrominated diphenyl ethers (PBDEs). Environmental Science & Technology. 40: 4429-34. PMID 16903281 DOI: 10.1021/Es052508D  1
2006 Rahm BG, Chauhan S, Holmes VF, Macbeth TW, Sorenson KS, Alvarez-Cohen L. Molecular characterization of microbial populations at two sites with differing reductive dechlorination abilities. Biodegradation. 17: 523-34. PMID 16477354 DOI: 10.1007/S10532-005-9023-9  1
2006 Templeton AS, Chu KH, Alvarez-Cohen L, Conrad ME. Variable carbon isotope fractionation expressed by aerobic CH4-oxidizing bacteria Geochimica Et Cosmochimica Acta. 70: 1739-1752. DOI: 10.1016/J.Gca.2005.12.002  1
2005 Freeborn RA, West KA, Bhupathiraju VK, Chauhan S, Rahm BG, Richardson RE, Alvarez-Cohen L. Phylogenetic analysis of TCE-dechlorinating consortia enriched on a variety of electron donors. Environmental Science & Technology. 39: 8358-68. PMID 16294874 DOI: 10.1021/Es048003P  1
2005 Johnson DR, Lee PK, Holmes VF, Fortin AC, Alvarez-Cohen L. Transcriptional expression of the tceA gene in a Dehalococcoides-containing microbial enrichment. Applied and Environmental Microbiology. 71: 7145-51. PMID 16269753 DOI: 10.1128/Aem.71.11.7145-7151.2005  1
2005 Johnson DR, Lee PK, Holmes VF, Alvarez-Cohen L. An internal reference technique for accurately quantifying specific mRNAs by real-time PCR with application to the tceA reductive dehalogenase gene. Applied and Environmental Microbiology. 71: 3866-71. PMID 16000799 DOI: 10.1128/Aem.71.7.3866-3871.2005  1
2005 Mahendra S, Alvarez-Cohen L. Pseudonocardia dioxanivorans sp. nov., a novel actinomycete that grows on 1,4-dioxane. International Journal of Systematic and Evolutionary Microbiology. 55: 593-8. PMID 15774630 DOI: 10.1099/Ijs.0.63085-0  1
2005 Sharp JO, Wood TK, Alvarez-Cohen L. Aerobic biodegradation of N-nitrosodimethylamine (NDMA) by axenic bacterial strains. Biotechnology and Bioengineering. 89: 608-18. PMID 15672376 DOI: 10.1002/Bit.20405  1
2005 Alvarez-Cohen L. Basics of NDMA biodegradation Industrial Bioprocessing. 27: 7.  1
2004 Chu KH, Mahendra S, Song DL, Conrad ME, Alvarez-Cohen L. Stable carbon isotope fractionation during aerobic biodegradation of chlorinated ethenes. Environmental Science & Technology. 38: 3126-30. PMID 15224745 DOI: 10.1021/Es035238C  1
2003 Deeb RA, Chu KH, Shih T, Linder S, Suffet I, Kavanaugh MC, Alvarez-Cohen L. MTBE and other oxygenates: Environmental sources, analysis, occurrence, and treatment Environmental Engineering Science. 20: 433-447. DOI: 10.1089/109287503768335922  1
2003 Mitch WA, Sharp JO, Trussell RR, Valentine RL, Alvarez-Cohen L, Sedlak DL. N-nitrosodimethylamine (NDMA) as a drinking water contaminant: A review Environmental Engineering Science. 20: 389-404. DOI: 10.1089/109287503768335896  1
2003 Alvarez-Cohen L, Sedlak DL. Emerging contaminants in water Environmental Engineering Science. 20: 387-388. DOI: 10.1089/109287503768335887  1
2002 Richardson RE, James CA, Bhupathiraju VK, Alvarez-Cohen L. Microbial activity in soils following steam treatment. Biodegradation. 13: 285-95. PMID 12521292 DOI: 10.1023/A:1021257026932  1
2002 Bhupathiraju VK, Krauter P, Holman HY, Conrad ME, Daley PF, Templeto AS, Hunt JR, Hernandez M, Alvarez-Cohen L. Assessment of in-situ bioremediation at a refinery waste-contaminated site and an aviation gasoline contaminated site. Biodegradation. 13: 79-90. PMID 12449311 DOI: 10.1023/A:1020415626554  1
2002 Richardson RE, Bhupathiraju VK, Song DL, Goulet TA, Alvarez-Cohen L. Phylogenetic characterization of microbial communities that reductively dechlorinate TCE based upon a combination of molecular techniques. Environmental Science & Technology. 36: 2652-62. PMID 12099461 DOI: 10.1021/Es0157797  1
2002 Song DL, Conrad ME, Sorenson KS, Alvarez-Cohen L. Stable carbon isotope fractionation during enhanced in situ bioremediation of trichloroethene. Environmental Science & Technology. 36: 2262-8. PMID 12038839 DOI: 10.1021/Es011162D  1
2002 Deeb RA, Sharp JO, Stocking A, McDonald S, West KA, Laugier M, Alvarez PJJ, Kavanaugh MC, Alvarez-Cohen L. Impact of ethanol on benzene plume lengths: Microbial and modelling studies Journal of Environmental Engineering. 128: 868-875. DOI: 10.1061/(Asce)0733-9372(2002)128:9(868)  1
2002 Deeb RA, Stocking A, Alvarez-Cohen L, Kavanaugh MC. Biodegradability of methyl tert-butyl ether and tert-butyl alchohol Acs Symposium Series. 799: 228-242.  1
2001 Alvarez-Cohen L, Speitel GE. Kinetics of aerobic cometabolism of chlorinated solvents Biodegradation. 12: 105-126. PMID 11710590 DOI: 10.1023/A:1012075322466  1
2001 Deeb RA, Hu HY, Hanson JR, Scow KM, Alvarez-Cohen L. Substrate interactions in BTEX and MTBE mixtures by an MTBE-degrading isolate. Environmental Science & Technology. 35: 312-7. PMID 11347603 DOI: 10.1021/Es001249J  1
2000 Deeb RA, Scow KM, Alvarez-Cohen L. Aerobic MTBE biodegradation: An examination of past studies, current challenges and future research directions Biodegradation. 11: 171-186. PMID 11440243 DOI: 10.1023/A:1011113320414  1
2000 Deeb RA, Alvarez-Cohen L. Aerobic biotransformation of gasoline aromatics in multicomponent mixtures Bioremediation Journal. 4: 171-179. DOI: 10.1080/10889860091114211  1
2000 Chu KH, Alvarez-Cohen L. Treatment of chlorinated solvents by nitrogen-fixing and nitrate- supplied methane oxidizers in columns packed with unsaturated porous media Environmental Science and Technology. 34: 1784-1793. DOI: 10.1021/Es9907717  1
2000 Deeb RA, Nishino S, Spain J, Hu HY, Scow K, Alvarez-Cohen L. MTBE and benzene biodegradation by a bacterial isolate via two independent monooxygenase-initiated pathways Acs Division of Environmental Chemistry, Preprints. 40: 280-282.  1
2000 Deeb RA, Nishino S, Spain J, Hu HY, Scow K, Alvarez-Cohen L. MTBE and benzene biodegration by a bacterial isolate via two independent monooxygenase-initiated pathways Acs National Meeting Book of Abstracts. 40: 280-282.  1
1999 Bhupathiraju VK, Hernandez M, Landfear D, Alvarez-Cohen L. Application of a tetrazolium dye as an indicator of viability in anaerobic bacteria Journal of Microbiological Methods. 37: 231-243. PMID 10480267 DOI: 10.1016/S0167-7012(99)00069-X  1
1999 Bhupathiraju VK, Hernandez M, Krauter P, Alvarez-Cohen L. A new direct microscopy based method for evaluating in-situ bioremediation Journal of Hazardous Materials. 67: 299-312. PMID 10370182 DOI: 10.1016/S0304-3894(99)00045-X  1
1999 Deeb RA, Alvarez-Cohen L. Temperature effects and substrate interactions during the aerobic biotransformation of BTEX mixtures by toluene-enriched consortia and Rhodococcus rhodochrous Biotechnology and Bioengineering. 62: 526-536. PMID 10099561 DOI: 10.1002/(Sici)1097-0290(19990305)62:5<526::Aid-Bit4>3.0.Co;2-8  1
1999 Chu KH, Alvarez-Cohen L. Evaluation of toxic effects of aeration and trichloroethylene oxidation on methanotrophic bacteria grown with different nitrogen sources Applied and Environmental Microbiology. 65: 766-772. PMID 9925614 DOI: 10.1128/Aem.65.2.766-772.1999  1
1999 Conrad ME, Templeton AS, Daley PF, Alvarez-Cohen L. Seasonally-induced fluctuations in microbial production and consumption of methane during bioremediation of aged subsurface refinery contamination Environmental Science and Technology. 33: 4061-4068. DOI: 10.1021/Es990582O  1
1999 Conrad ME, Templeton AS, Daley PF, Alvarez-Cohen L. Isotopic evidence for biological controls on migration of petroleum hydrocarbons Organic Geochemistry. 30: 843-859. DOI: 10.1016/S0146-6380(99)00067-4  1
1999 Stringfellow WT, Alvarez-Cohen L. Evaluating the relationship between the sorption of PAHs to bacterial biomass and biodegradation Water Research. 33: 2535-2544. DOI: 10.1016/S0043-1354(98)00497-7  1
1998 Chu KH, Alvarez-Cohen L. Effect of nitrogen source on growth and trichloroethylene degradation by methane-oxidizing bacteria Applied and Environmental Microbiology. 64: 3451-3457. PMID 9726896 DOI: 10.1128/Aem.64.9.3451-3457.1998  1
1997 Chang HL, Alvarez-Cohen L. Two-stage methanotrophic bioreactor for the treatment of chlorinated organic wastewater Water Research. 31: 2026-2036. DOI: 10.1016/S0043-1354(97)00020-1  1
1996 Chang HL, Alvarez-Cohen L. Biodegradation of individual and multiple chlorinated aliphatic hydrocarbons by methane-oxidizing cultures Applied and Environmental Microbiology. 62: 3371-3377. PMID 8795228  1
1996 Chu KH, Alvarez-Cohen L. Trichloroethylene degradation by methane-oxidizing cultures grown with various nitrogen sources Water Environment Research. 68: 76-82. DOI: 10.2175/106143096X127235  1
1995 Chang HL, Alvarez-Cohen L. Model for the cometabolic biodegradation of chlorinated organics Environmental Science and Technology. 29: 2357-2367. DOI: 10.1021/Es00009A031  1
1995 Chang HL, Alvarez-Cohen L. Transformation capacities of chlorinated organics by mixed cultures enriched on methane, propane, toluene, or phenol Biotechnology and Bioengineering. 45: 440-449. DOI: 10.1002/bit.260450509  1
1994 Aitken MD, Heck PE, Alvarez-Cohen L, Grimberg SJ, Stringfellow WT. Activated sludge and other aerobic suspended culture processes Water Environment Research. 66: 325-336.  1
1993 Alvarez-Cohen L, McCarty PL, Roberts PV. Sorption of trichloroethylene onto a zeolite accompanied by methanotrophic biotransformation Environmental Science and Technology. 27: 2141-2148. DOI: 10.1021/Es00047A021  1
1993 Aitken MD, Heck PE, Alvarez-Cohen L, Grimberg SJ, Stringfellow WT. Activated sludge Water Environment Research. 65: 324-336.  1
1992 Alvarez-Cohen L, McCarty PL, Boulygina E, Hanson RS, Brusseau GA, Tsien HC. Characterization of a methane-utilizing bacterium from a bacterial consortium that rapidly degrades trichloroethylene and chloroform. Applied and Environmental Microbiology. 58: 1886-93. PMID 1377902 DOI: 10.1128/Aem.58.6.1886-1893.1992  1
1991 Alvarez-Cohen L, McCarty PL. Effects of toxicity, aeration, and reductant supply on trichloroethylene transformation by a mixed methanotrophic culture. Applied and Environmental Microbiology. 57: 228-35. PMID 2036009 DOI: 10.1128/Aem.57.1.228-235.1991  1
1991 Alvarez-Cohen L, McCarty PL. Product toxicity and cometabolic competitive inhibition modeling of chloroform and trichloroethylene transformation by methanotrophic resting cells. Applied and Environmental Microbiology. 57: 1031-7. PMID 1905516 DOI: 10.1128/Aem.57.4.1031-1037.1991  1
1991 Alvarez-Cohen L, McCarty PL. Two-stage dispersed-growth treatment of halogenated aliphatic compounds by cometabolism Environmental Science and Technology. 25: 1387-1393. DOI: 10.1021/Es00020A004  1
1991 Alvarez-Cohen L, McCarty PL. A cometabolic biotransformation model for halogenated aliphatic compounds exhibiting product toxicity Environmental Science and Technology. 25: 1381-1387. DOI: 10.1021/Es00020A003  1
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