| Year |
Citation |
Score |
| 2024 |
Mead HL, Valentine M, Yin H, Thompson Iii GR, Keim P, Engelthaler DM, Barker BM. small molecule screening to inform novel candidates for use in fluconazole combination therapy against . Microbiology Spectrum. e0100824. PMID 39162534 DOI: 10.1128/spectrum.01008-24 |
0.5 |
|
| 2024 |
Pearson T, Furstenau T, Wood C, Rigas V, Sahl J, Maltinsky S, Currie BJ, Mayo M, Hall C, Keim P, Fofanov V. Population sequencing for diversity and transmission analyses. Biorxiv : the Preprint Server For Biology. PMID 38948873 DOI: 10.1101/2024.06.18.599478 |
0.617 |
|
| 2024 |
Williamson CHD, Vazquez AJ, Nunnally AE, Kyger K, Fofanov VY, Furstenau TN, Hornstra HM, Terriquez J, Keim P, Sahl JW. ColiSeq: a multiplex amplicon assay that provides strain level resolution of directly from clinical specimens. Microbiology Spectrum. e0413923. PMID 38651881 DOI: 10.1128/spectrum.04139-23 |
0.316 |
|
| 2024 |
Andrianaivoarimanana V, Savin C, Birdsell DN, Vogler AJ, Le Guern AS, Rahajandraibe S, Brémont S, Rahelinirina S, Sahl JW, Ramasindrazana B, Rakotonanahary RJL, Rakotomanana F, Randremanana R, Maheriniaina V, Razafimbia V, ... ... Keim P, et al. Multiple Introductions of Yersinia pestis during Urban Pneumonic Plague Epidemic, Madagascar, 2017. Emerging Infectious Diseases. 30: 289-298. PMID 38270131 DOI: 10.3201/eid3002.230759 |
0.646 |
|
| 2023 |
Liu CM, Aziz M, Park DE, Wu Z, Stegger M, Li M, Wang Y, Schmidlin K, Johnson TJ, Koch BJ, Hungate BA, Nordstrom L, Gauld L, Weaver B, Rolland D, ... ... Keim PS, et al. Using source-associated mobile genetic elements to identify zoonotic extraintestinal infections. One Health (Amsterdam, Netherlands). 16: 100518. PMID 37363239 DOI: 10.1016/j.onehlt.2023.100518 |
0.573 |
|
| 2023 |
Williamson CHD, Roe CC, Terriquez J, Hornstra H, Lucero S, Nunnally AE, Vazquez AJ, Vinocur J, Plude C, Nienstadt L, Stone NE, Celona KR, Wagner DM, Keim P, Sahl JW. A local-scale One Health genomic surveillance of demonstrates highly related strains from humans, canines, and the environment. Microbial Genomics. 9. PMID 37347682 DOI: 10.1099/mgen.0.001046 |
0.352 |
|
| 2023 |
Highlander SK, Wood JM, Gillece JD, Folkerts M, Fofanov V, Furstenau T, Singh NK, Guan L, Seuylemezian A, Benardini JN, Engelthaler DM, Venkateswaran K, Keim PS. Multi-faceted metagenomic analysis of spacecraft associated surfaces reveal planetary protection relevant microbial composition. Plos One. 18: e0282428. PMID 36947490 DOI: 10.1371/journal.pone.0282428 |
0.554 |
|
| 2022 |
Williamson CHD, Stone NE, Nunnally AE, Roe CC, Vazquez AJ, Lucero SA, Hornstra H, Wagner DM, Keim P, Rupnik M, Janezic S, Sahl JW. Identification of novel, cryptic species isolates from environmental samples collected from diverse geographical locations. Microbial Genomics. 8. PMID 35166655 DOI: 10.1099/mgen.0.000742 |
0.362 |
|
| 2022 |
Roe C, Vazquez AJ, Phillips PD, Allender CJ, Bowen RA, Nottingham RD, Doyle A, Wongsuwan G, Wuthiekanun V, Limmathurotsakul D, Peacock S, Keim P, Tuanyok A, Wagner DM, Sahl JW. Multiple phylogenetically-diverse, differentially-virulent Burkholderia pseudomallei isolated from a single soil sample collected in Thailand. Plos Neglected Tropical Diseases. 16: e0010172. PMID 35143500 DOI: 10.1371/journal.pntd.0010172 |
0.352 |
|
| 2021 |
Ridenour CL, Cocking J, Poidmore S, Erickson D, Brock B, Valentine M, Roe CC, Young SJ, Henke JA, Hung KY, Wittie J, Stefanakos E, Sumner C, Ruedas M, Raman V, ... ... Keim PS, et al. St. Louis Encephalitis Virus in the Southwestern United States: A Phylogeographic Case for a Multi-Variant Introduction Event. Frontiers in Genetics. 12: 667895. PMID 34168675 DOI: 10.3389/fgene.2021.667895 |
0.614 |
|
| 2021 |
Ridenour CL, Cocking J, Poidmore S, Erickson D, Brock B, Valentine M, Roe CC, Young SJ, Henke JA, Hung KY, Wittie J, Stefanakos E, Sumner C, Ruedas M, Raman V, ... ... Keim PS, et al. St. Louis Encephalitis Virus in the Southwestern United States: A Phylogeographic Case for a Multi-Variant Introduction Event. Frontiers in Genetics. 12: 667895. PMID 34168675 DOI: 10.3389/fgene.2021.667895 |
0.614 |
|
| 2021 |
Miller E, Barragan V, Chiriboga J, Weddell C, Luna L, Jiménez DJ, Aleman J, Mihaljevic JR, Olivas S, Marks J, Izurieta R, Nieto N, Keim P, Trueba G, Caporaso JG, et al. Leptospira in river and soil in a highly endemic area of Ecuador. Bmc Microbiology. 21: 17. PMID 33413126 DOI: 10.1186/s12866-020-02069-y |
0.542 |
|
| 2020 |
Bolyen E, Dillon MR, Bokulich NA, Ladner JT, Larsen BB, Hepp CM, Lemmer D, Sahl JW, Sanchez A, Holdgraf C, Sewell C, Choudhury AG, Stachurski J, McKay M, Engelthaler DM, ... ... Keim P, et al. Reproducibly sampling SARS-CoV-2 genomes across time, geography, and viral diversity. F1000research. 9: 657. PMID 33500774 DOI: 10.12688/F1000Research.24751.1 |
0.601 |
|
| 2020 |
Martínez Arbas S, Narayanasamy S, Herold M, Lebrun LA, Hoopmann MR, Li S, Lam TJ, Kunath BJ, Hicks ND, Liu CM, Price LB, Laczny CC, Gillece JD, Schupp JM, Keim PS, et al. Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics. Nature Microbiology. PMID 33139880 DOI: 10.1038/s41564-020-00794-8 |
0.515 |
|
| 2020 |
Ladner JT, Larsen BB, Bowers JR, Hepp CM, Bolyen E, Folkerts M, Sheridan K, Pfeiffer A, Yaglom H, Lemmer D, Sahl JW, Kaelin EA, Maqsood R, Bokulich NA, Quirk G, ... ... Keim P, et al. An Early Pandemic Analysis of SARS-CoV-2 Population Structure and Dynamics in Arizona. Mbio. 11. PMID 32887735 DOI: 10.1128/Mbio.02107-20 |
0.633 |
|
| 2020 |
Pearson T, Sahl JW, Hepp CM, Handady K, Hornstra H, Vazquez AJ, Settles E, Mayo M, Kaestli M, Williamson CHD, Price EP, Sarovich DS, Cook JM, Wolken SR, Bowen RA, ... Keim P, et al. Pathogen to commensal? Longitudinal within-host population dynamics, evolution, and adaptation during a chronic >16-year Burkholderia pseudomallei infection. Plos Pathogens. 16: e1008298. PMID 32134991 DOI: 10.1371/Journal.Ppat.1008298 |
0.696 |
|
| 2020 |
Smith TJ, Xie G, Williamson CHD, Hill KK, Sahl JW, Keim P, Johnson SL. Genomic characterization of newly completed genomes of botulinum neurotoxin-producing species from Argentina, Australia and Africa. Genome Biology and Evolution. PMID 32108238 DOI: 10.1093/Gbe/Evaa043 |
0.425 |
|
| 2020 |
Teixeira MM, Muszewska A, Travis J, Moreno LF, Ahmed S, Roe C, Mead H, Steczkiewicz K, Lemmer D, de Hoog S, Keim P, Wiederhold N, Barker BM. Genomic characterization of Parengyodontium americanum sp. Nov. Fungal Genetics and Biology : Fg & B. 103351. PMID 32028048 DOI: 10.1016/J.Fgb.2020.103351 |
0.396 |
|
| 2020 |
Bolyen E, Dillon MR, Bokulich NA, Ladner JT, Larsen BB, Hepp CM, Lemmer D, Sahl JW, Sanchez A, Holdgraf C, Sewell C, Choudhury AG, Stachurski J, McKay M, Engelthaler DM, ... ... Keim P, et al. Reproducibly sampling SARS-CoV-2 genomes across time, geography, and viral diversity F1000research. 9: 657. DOI: 10.12688/f1000research.24751.1 |
0.557 |
|
| 2019 |
Teixeira MM, Alvarado P, Roe CC, Thompson GR, Patané JSL, Sahl JW, Keim P, Galgiani JN, Litvintseva AP, Matute DR, Barker BM. Population Structure and Genetic Diversity among Isolates of in Venezuela and Surrounding Regions. Mbio. 10. PMID 31772050 DOI: 10.1128/Mbio.01976-19 |
0.39 |
|
| 2019 |
Hall CM, Jaramillo S, Jimenez R, Stone NE, Centner H, Busch JD, Bratsch N, Roe CC, Gee JE, Hoffmaster AR, Rivera-Garcia S, Soltero F, Ryff K, Perez-Padilla J, Keim P, et al. Burkholderia pseudomallei, the causative agent of melioidosis, is rare but ecologically established and widely dispersed in the environment in Puerto Rico. Plos Neglected Tropical Diseases. 13: e0007727. PMID 31487287 DOI: 10.1371/Journal.Pntd.0007727 |
0.313 |
|
| 2019 |
Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, ... ... Keim P, et al. Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nature Biotechnology. PMID 31399723 DOI: 10.1038/S41587-019-0252-6 |
0.551 |
|
| 2019 |
Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, ... ... Keim P, et al. Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nature Biotechnology. PMID 31341288 DOI: 10.1038/S41587-019-0209-9 |
0.551 |
|
| 2019 |
Williamson CHD, Stone NE, Nunnally AE, Hornstra HM, Wagner DM, Roe CC, Vazquez AJ, Nandurkar N, Vinocur J, Terriquez J, Gillece J, Travis J, Lemmer D, Keim P, Sahl JW. A global to local genomics analysis of Clostridioides difficile ST1/RT027 identifies cryptic transmission events in a northern Arizona healthcare network. Microbial Genomics. PMID 31107202 DOI: 10.1099/mgen.0.000271 |
0.303 |
|
| 2019 |
Birdsell DN, Yaglom H, Rodriguez E, Engelthaler DM, Maurer M, Gaither M, Vinocur J, Weiss J, Terriquez J, Komatsu K, Ormsby ME, Gebhardt M, Solomon C, Nienstadt L, Williamson CHD, ... ... Keim PS, et al. Phylogenetic Analysis of Francisella tularensis Group A.II Isolates from 5 Patients with Tularemia, Arizona, USA, 2015-2017. Emerging Infectious Diseases. 25: 944-946. PMID 31002053 DOI: 10.3201/Eid2505.180363 |
0.548 |
|
| 2019 |
Stone NE, Nunnally AE, Jimenez V, Cope EK, Sahl JW, Sheridan K, Hornstra HM, Vinocur J, Settles EW, Headley KC, Williamson CHD, Rideout JR, Bolyen E, Caporaso JG, Terriquez J, ... ... Keim P, et al. Domestic canines do not display evidence of gut microbial dysbiosis in the presence of Clostridioides (Clostridium) difficile, despite cellular susceptibility to its toxins. Anaerobe. PMID 30946985 DOI: 10.1016/J.Anaerobe.2019.03.017 |
0.353 |
|
| 2019 |
Bowers JR, Valentine M, Harrison V, Fofanov VY, Gillece J, Delisle J, Patton B, Schupp J, Sheridan K, Lemmer D, Ostdiek S, Bains HK, Heim J, Sylvester T, Prasai S, ... ... Keim P, et al. Genomic Analyses of Acute Flaccid Myelitis Cases among a Cluster in Arizona Provide Further Evidence of Enterovirus D68 Role. Mbio. 10. PMID 30670612 DOI: 10.1128/Mbio.02262-18 |
0.535 |
|
| 2019 |
Vogler AJ, Sahl JW, Leal NC, Sobreira M, Williamson CHD, Bollig MC, Birdsell DN, Rivera A, Thompson B, Nottingham R, Rezende AM, Keim P, Almeida AMP, Wagner DM. A single introduction of Yersinia pestis to Brazil during the 3rd plague pandemic. Plos One. 14: e0209478. PMID 30625164 DOI: 10.1371/Journal.Pone.0209478 |
0.697 |
|
| 2018 |
Hepp CM, Cocking JH, Valentine M, Young SJ, Damian D, Samuels-Crow KE, Sheridan K, Fofanov VY, Furstenau TN, Busch JD, Erickson DE, Lancione RC, Smith K, Will J, Townsend J, ... Keim PS, et al. Phylogenetic analysis of West Nile Virus in Maricopa County, Arizona: Evidence for dynamic behavior of strains in two major lineages in the American Southwest. Plos One. 13: e0205801. PMID 30475820 DOI: 10.1371/Journal.Pone.0205801 |
0.58 |
|
| 2018 |
Baker AL, Pearson T, Sahl JW, Hepp C, Price EP, Sarovich DS, Mayo M, Tuanyok A, Currie BJ, Keim P, Warner J. Burkholderia pseudomallei distribution in Australasia is linked to paleogeographic and anthropogenic history. Plos One. 13: e0206845. PMID 30395628 DOI: 10.1371/Journal.Pone.0206845 |
0.672 |
|
| 2018 |
Boehmer T, Vogler AJ, Thomas A, Sauer S, Hergenroether M, Straubinger RK, Birdsell D, Keim P, Sahl JW, Williamson CHD, Riehm JM. Phenotypic characterization and whole genome analysis of extended-spectrum beta-lactamase-producing bacteria isolated from dogs in Germany. Plos One. 13: e0206252. PMID 30365516 DOI: 10.1371/Journal.Pone.0206252 |
0.721 |
|
| 2018 |
Liu CM, Stegger M, Aziz M, Johnson TJ, Waits K, Nordstrom L, Gauld L, Weaver B, Rolland D, Statham S, Horwinski J, Sariya S, Davis GS, Sokurenko E, Keim P, et al. Escherichia coli ST131-22 as a Foodborne Uropathogen. Mbio. 9. PMID 30154256 DOI: 10.1128/Mbio.00470-18 |
0.602 |
|
| 2018 |
Bowers JR, Driebe EM, Albrecht V, McDougal LK, Granade M, Roe CC, Lemmer D, Rasheed JK, Engelthaler DM, Keim P, Limbago BM. Improved Subtyping of Staphylococcus aureus Clonal Complex 8 Strains Based on Whole-Genome Phylogenetic Analysis. Msphere. 3. PMID 29720527 DOI: 10.1128/mSphere.00464-17 |
0.616 |
|
| 2018 |
Woolbright SA, Rehill BJ, Lindroth RL, DiFazio SP, Martinsen GD, Zinkgraf MS, Allan GJ, Keim P, Whitham TG. Large effect quantitative trait loci for salicinoid phenolic glycosides in : Implications for gene discovery. Ecology and Evolution. 8: 3726-3737. PMID 29686853 DOI: 10.1002/Ece3.3932 |
0.353 |
|
| 2018 |
Sahl JW, Mayo M, Price EP, Sarovich DS, Kaestli M, Pearson T, Williamson CHD, Nottingham R, Sheridan K, Wagner DM, Currie BJ, Keim P. Complete Genome Sequence of the Environmental Burkholderia pseudomallei Sequence Type 131 Isolate MSHR1435, Associated with a Chronic Melioidosis Infection. Genome Announcements. 6. PMID 29545292 DOI: 10.1128/genomeA.00072-18 |
0.614 |
|
| 2018 |
Bowers JR, Parise KL, Kelley EJ, Lemmer D, Schupp JM, Driebe EM, Engelthaler DM, Keim P, Barker BM. Direct detection of Coccidioides from Arizona soils using CocciENV, a highly sensitive and specific real-time PCR assay. Medical Mycology. PMID 29534236 DOI: 10.1093/Mmy/Myy007 |
0.525 |
|
| 2017 |
Foster JT, Walker FM, Rannals BD, Hussain MH, Drees KP, Tiller RV, Hoffmaster AR, Al-Rawahi A, Keim P, Saqib M. African Lineage Brucella melitensis Isolates from Omani Livestock. Frontiers in Microbiology. 8: 2702. PMID 29379492 DOI: 10.3389/fmicb.2017.02702 |
0.411 |
|
| 2017 |
Drees KP, Lorch JM, Puechmaille SJ, Parise KL, Wibbelt G, Hoyt JR, Sun K, Jargalsaikhan A, Dalannast M, Palmer JM, Lindner DL, Marm Kilpatrick A, Pearson T, Keim PS, Blehert DS, et al. Phylogenetics of a Fungal Invasion: Origins and Widespread Dispersal of White-Nose Syndrome. Mbio. 8. PMID 29233897 DOI: 10.1128/Mbio.01941-17 |
0.655 |
|
| 2017 |
Muller EEL, Narayanasamy S, Zeimes M, Laczny CC, Lebrun LA, Herold M, Hicks ND, Gillece JD, Schupp JM, Keim P, Wilmes P. First draft genome sequence of a strain belonging to the Zoogloea genus and its gene expression in situ. Standards in Genomic Sciences. 12: 64. PMID 29075368 DOI: 10.1186/S40793-017-0274-Y |
0.361 |
|
| 2017 |
Price EP, Sarovich DS, Webb JR, Hall CM, Jaramillo SA, Sahl JW, Kaestli M, Mayo M, Harrington G, Baker AL, Sidak-Loftis LC, Settles EW, Lummis M, Schupp JM, Gillece JD, ... ... Keim P, et al. Phylogeographic, genomic, and meropenem susceptibility analysis of Burkholderia ubonensis. Plos Neglected Tropical Diseases. 11: e0005928. PMID 28910350 DOI: 10.1371/Journal.Pntd.0005928 |
0.455 |
|
| 2017 |
Vogler AJ, Andrianaivoarimanana V, Telfer S, Hall CM, Sahl JW, Hepp CM, Centner H, Andersen G, Birdsell DN, Rahalison L, Nottingham R, Keim P, Wagner DM, Rajerison M. Temporal phylogeography of Yersinia pestis in Madagascar: Insights into the long-term maintenance of plague. Plos Neglected Tropical Diseases. 11: e0005887. PMID 28873412 DOI: 10.1371/Journal.Pntd.0005887 |
0.631 |
|
| 2017 |
Barragan V, Olivas S, Keim P, Pearson T. Critical knowledge gaps in our understanding about environmental cycling and transmission of Leptospira. Applied and Environmental Microbiology. PMID 28754706 DOI: 10.1128/Aem.01190-17 |
0.588 |
|
| 2017 |
Williamson CHD, Vazquez AJ, Hill K, Smith TJ, Nottingham R, Stone NE, Sobek CJ, Cocking JH, Fernández RA, Caballero PA, Leiser OP, Keim P, Sahl JW. Differentiating botulinum-neurotoxin-producing clostridia with a simple, multiplex PCR assay. Applied and Environmental Microbiology. PMID 28733282 DOI: 10.1128/Aem.00806-17 |
0.412 |
|
| 2017 |
Venkateswaran K, Singh NK, Checinska Sielaff A, Pope RK, Bergman NH, van Tongeren SP, Patel NB, Lawson PA, Satomi M, Williamson CHD, Sahl JW, Keim P, Pierson D, Perry J. Non-Toxin-Producing Bacillus cereus Strains Belonging to the B. anthracis Clade Isolated from the International Space Station. Msystems. 2. PMID 28680972 DOI: 10.1128/mSystems.00021-17 |
0.353 |
|
| 2017 |
Antwerpen MH, Sahl JW, Birdsell D, Pearson T, Pearce MJ, Redmond C, Meyer H, Keim PS. Unexpected Relations of Historical Anthrax Strain. Mbio. 8. PMID 28442608 DOI: 10.1128/Mbio.00440-17 |
0.643 |
|
| 2017 |
Barragan V, Nieto N, Keim P, Pearson T. Meta-analysis to estimate the load of Leptospira excreted in urine: beyond rats as important sources of transmission in low-income rural communities. Bmc Research Notes. 10: 71. PMID 28129788 DOI: 10.1186/S13104-017-2384-4 |
0.606 |
|
| 2017 |
Chewapreecha C, Holden MT, Vehkala M, Välimäki N, Yang Z, Harris SR, Mather AE, Tuanyok A, De Smet B, Le Hello S, Bizet C, Mayo M, Wuthiekanun V, Limmathurotsakul D, Phetsouvanh R, ... ... Keim P, et al. Global and regional dissemination and evolution of Burkholderia pseudomallei. Nature Microbiology. 2: 16263. PMID 28112723 DOI: 10.1038/Nmicrobiol.2016.263 |
0.435 |
|
| 2017 |
Weiss G, Cocking J, Bilagody C, Hornstra H, Kaufman E, Nader D, Turner J, Chandrika S, Caporaso J, Keim P, Harmon B, Barilla H, Pearson T. P1.04-019 Final Analysis of Lung Microbiome from Patients Undergoing Bronchoscopy Journal of Thoracic Oncology. 12: S606-S607. DOI: 10.1016/J.Jtho.2016.11.775 |
0.54 |
|
| 2017 |
Vinocur JM, Terriquez J, Nienstadt L, Keim P. Transmission of Clostridium difficile across Multiple Healthcare Facilities Revealed through Whole-Genome Sequencing American Journal of Infection Control. 45. DOI: 10.1016/J.Ajic.2017.04.273 |
0.342 |
|
| 2016 |
Sahl JW, Lemmer D, Travis J, Schupp JM, Gillece JD, Aziz M, Driebe EM, Drees KP, Hicks ND, Williamson CH, Hepp CM, Smith DE, Roe C, Engelthaler DM, Wagner DM, ... Keim P, et al. NASP: an accurate, rapid method for the identification of SNPs in WGS datasets that supports flexible input and output formats. Microbial Genomics. 2: e000074. PMID 28348869 DOI: 10.1099/mgen.0.000074 |
0.599 |
|
| 2016 |
Olivas S, Hornstra H, Priestley RA, Kaufman E, Hepp C, Sonderegger DL, Handady K, Massung RF, Keim P, Kersh GJ, Pearson T. Massive dispersal of Coxiella burnetii among cattle across the United States. Microbial Genomics. 2: e000068. PMID 28348863 DOI: 10.1099/mgen.0.000068 |
0.644 |
|
| 2016 |
Dwibedi C, Birdsell D, Lärkeryd A, Myrtennäs K, Öhrman C, Nilsson E, Karlsson E, Hochhalter C, Rivera A, Maltinsky S, Bayer B, Keim P, Scholz HC, Tomaso H, Wittwer M, et al. Long-range dispersal moved Francisella tularensis into Western Europe from the East. Microbial Genomics. 2: e000100. PMID 28348839 DOI: 10.1099/mgen.0.000100 |
0.344 |
|
| 2016 |
Roe CC, Horn KS, Driebe EM, Bowers J, Terriquez JA, Keim P, Engelthaler DM. Whole genome SNP typing to investigate methicillin-resistant Staphylococcus aureus carriage in a health-care provider as the source of multiple surgical site infections. Hereditas. 153: 11. PMID 28096773 DOI: 10.1186/S41065-016-0017-X |
0.604 |
|
| 2016 |
Tuanyok A, Mayo M, Scholz H, Hall CM, Allender CJ, Kaestli M, Ginther J, Spring-Pearson S, Bollig MC, Stone JK, Settles EW, Busch JD, Sidak-Loftis L, Sahl JW, Thomas A, ... ... Keim P, et al. Burkholderia humptydooensis sp. nov., a new species related to Burkholderia thailandensis and the fifth member of the pseudomallei complex. Applied and Environmental Microbiology. PMID 27986727 DOI: 10.1128/Aem.02802-16 |
0.426 |
|
| 2016 |
Stone NE, Sidak-Loftis LC, Sahl JW, Vazquez AJ, Wiggins KB, Gillece JD, Hicks ND, Schupp JM, Busch JD, Keim P, Wagner DM. More than 50% of Clostridium difficile Isolates from Pet Dogs in Flagstaff, USA, Carry Toxigenic Genotypes. Plos One. 11: e0164504. PMID 27723795 DOI: 10.1371/Journal.Pone.0164504 |
0.393 |
|
| 2016 |
Sahl JW, Pearson T, Okinaka R, Schupp JM, Gillece JD, Heaton H, Birdsell D, Hepp C, Fofanov V, Noseda R, Fasanella A, Hoffmaster A, Wagner DM, Keim P. A Bacillus anthracis Genome Sequence from the Sverdlovsk 1979 Autopsy Specimens. Mbio. 7. PMID 27677796 DOI: 10.1128/Mbio.01501-16 |
0.701 |
|
| 2016 |
Vogler AJ, Nottingham R, Busch JD, Sahl JW, Shuey MM, Foster JT, Schupp JM, Smith SR, Rocke TE, Keim P, Wagner DM. VNTR diversity in Yersinia pestis isolates from an animal challenge study reveals the potential for in vitro mutations during laboratory cultivation. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. PMID 27664903 DOI: 10.1016/J.Meegid.2016.09.019 |
0.684 |
|
| 2016 |
Sahl JW, Vazquez AJ, Hall CM, Busch JD, Tuanyok A, Mayo M, Schupp JM, Lummis M, Pearson T, Shippy K, Colman RE, Allender CJ, Theobald V, Sarovich DS, Price EP, ... ... Keim P, et al. The Effects of Signal Erosion and Core Genome Reduction on the Identification of Diagnostic Markers. Mbio. 7. PMID 27651357 DOI: 10.1128/Mbio.00846-16 |
0.626 |
|
| 2016 |
Barragan V, Chiriboga J, Miller E, Olivas S, Birdsell D, Hepp C, Hornstra H, Schupp JM, Morales M, Gonzalez M, Reyes S, de la Cruz C, Keim P, Hartskeerl R, Trueba G, et al. High Leptospira Diversity in Animals and Humans Complicates the Search for Common Reservoirs of Human Disease in Rural Ecuador. Plos Neglected Tropical Diseases. 10: e0004990. PMID 27622673 DOI: 10.1371/Journal.Pntd.0004990 |
0.537 |
|
| 2016 |
Bowers JR, Lemmer D, Sahl JW, Pearson T, Driebe EM, Wojack B, Saubolle MA, Engelthaler DM, Keim P. KlebSeq: A Diagnostic Tool for Surveillance, Detection, and Monitoring of Klebsiella pneumoniae. Journal of Clinical Microbiology. PMID 27510832 DOI: 10.1128/Jcm.00927-16 |
0.734 |
|
| 2016 |
Kersh GJ, Priestley RA, Hornstra HM, Self JS, Fitzpatrick KA, Biggerstaff BJ, Keim P, Pearson T, Massung RF. Genotyping and Axenic Growth of Coxiella burnetii Isolates Found in the United States Environment. Vector Borne and Zoonotic Diseases (Larchmont, N.Y.). PMID 27304166 DOI: 10.1089/Vbz.2016.1972 |
0.644 |
|
| 2016 |
Pearson T, Cocking JH, Hornstra HM, Keim P. False detection of Coxiella burnetii-what is the risk? Fems Microbiology Letters. 363. PMID 27190242 DOI: 10.1093/femsle/fnw088 |
0.499 |
|
| 2016 |
Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, Gade L, Waddell V, Komatsu K, Arathoon E, Logemann H, Thompson GR, Chiller T, Barker B, Keim P, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. Mbio. 7. PMID 27118594 DOI: 10.1128/Mbio.00550-16 |
0.631 |
|
| 2016 |
Engelthaler DM, Valentine M, Bowers J, Pistole J, Driebe EM, Terriquez J, Nienstadt L, Carroll M, Schumacher M, Ormsby ME, Brady S, Livar E, Yazzie D, Waddell V, Peoples M, ... ... Keim P, et al. Hypervirulent emm59 Clone in Invasive Group A Streptococcus Outbreak, Southwestern United States. Emerging Infectious Diseases. 22: 734-8. PMID 26982330 DOI: 10.3201/Eid2204.151582 |
0.619 |
|
| 2016 |
Williamson CH, Sahl JW, Smith TJ, Xie G, Foley BT, Smith LA, Fernández RA, Lindström M, Korkeala H, Keim P, Foster J, Hill K. Comparative genomic analyses reveal broad diversity in botulinum-toxin-producing Clostridia. Bmc Genomics. 17: 180. PMID 26939550 DOI: 10.1186/S12864-016-2502-Z |
0.394 |
|
| 2015 |
Roume H, Heintz-Buschart A, Muller EEL, May P, Satagopam VP, Laczny CC, Narayanasamy S, Lebrun LA, Hoopmann MR, Schupp JM, Gillece JD, Hicks ND, Engelthaler DM, Sauter T, Keim PS, et al. Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks. Npj Biofilms and Microbiomes. 1: 15007. PMID 28721231 DOI: 10.1038/npjbiofilms.2015.7 |
0.475 |
|
| 2015 |
Pullan ST, Pearson TR, Latham J, Mason J, Atkinson B, Silman NJ, Marston CK, Sahl JW, Birdsell D, Hoffmaster AR, Keim P, Vipond R. Whole-genome sequencing investigation of animal-skin-drum-associated UK anthrax cases reveals evidence of mixed populations and relatedness to a US case. Microbial Genomics. 1: e000039. PMID 28348823 DOI: 10.1099/mgen.0.000039 |
0.658 |
|
| 2015 |
Vogler AJ, Nottingham R, Parise KL, Keim P, Barker BM. Effective Disinfectants for Coccidioides immitis and C. posadasii. Applied Biosafety : Journal of the American Biological Safety Association. 20: 154-158. PMID 26900366 DOI: 10.1177/153567601502000306 |
0.62 |
|
| 2015 |
Keim P, Grunow R, Vipond R, Grass G, Hoffmaster A, Birdsell DN, Klee SR, Pullan S, Antwerpen M, Bayer BN, Latham J, Wiggins K, Hepp C, Pearson T, Brooks T, et al. Whole Genome Analysis of Injectional Anthrax Identifies Two Disease Clusters Spanning More Than 13 Years. Ebiomedicine. 2: 1613-8. PMID 26870786 DOI: 10.1016/J.Ebiom.2015.10.004 |
0.57 |
|
| 2015 |
Price EP, Sarovich DS, Smith EJ, MacHunter B, Harrington G, Theobald V, Hall CM, Hornstra HM, McRobb E, Podin Y, Mayo M, Sahl JW, Wagner DM, Keim P, Kaestli M, et al. Large-scale comparative genomics identifies unprecedented melioidosis cases in northern Australia caused by an Asian Burkholderia pseudomallei strain. Applied and Environmental Microbiology. PMID 26607593 DOI: 10.1128/Aem.03013-15 |
0.483 |
|
| 2015 |
Hall CM, Busch JD, Shippy K, Allender CJ, Kaestli M, Mayo M, Sahl JW, Schupp JM, Colman RE, Keim P, Currie BJ, Wagner DM. Diverse Burkholderia Species Isolated from Soils in the Southern United States with No Evidence of B. pseudomallei. Plos One. 10: e0143254. PMID 26600238 DOI: 10.1371/Journal.Pone.0143254 |
0.352 |
|
| 2015 |
Kilic S, Birdsell DN, Karagöz A, Çelebi B, Bakkaloglu Z, Arikan M, Sahl JW, Mitchell C, Rivera A, Maltinsky S, Keim P, Üstek D, Durmaz R, Wagner DM. Water as Source of Francisella tularensis Infection in Humans, Turkey. Emerging Infectious Diseases. 21: 2213-6. PMID 26583383 DOI: 10.3201/Eid2112.150634 |
0.342 |
|
| 2015 |
Leal NC, Sobreira M, Araújo AF, Magalhães JL, Vogler AJ, Bollig MC, Nottingham R, Keim P, Wagner DM, Almeida AM. Viability of Yersinia pestis subcultures in agar-stabs. Letters in Applied Microbiology. PMID 26524218 DOI: 10.1111/Lam.12519 |
0.704 |
|
| 2015 |
Vogler AJ, Keim P, Wagner DM. A review of methods for subtyping Yersinia pestis: From phenotypes to whole genome sequencing. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 37: 21-36. PMID 26518910 DOI: 10.1016/J.Meegid.2015.10.024 |
0.675 |
|
| 2015 |
Spring-Pearson SM, Stone JK, Doyle A, Allender CJ, Okinaka RT, Mayo M, Broomall SM, Hill JM, Karavis MA, Hubbard KS, Insalaco JM, McNew LA, Rosenzweig CN, Gibbons HS, Currie BJ, ... ... Keim P, et al. Pangenome Analysis of Burkholderia pseudomallei: Genome Evolution Preserves Gene Order despite High Recombination Rates. Plos One. 10: e0140274. PMID 26484663 DOI: 10.1371/Journal.Pone.0140274 |
0.353 |
|
| 2015 |
Bauer AE, Olivas S, Cooper M, Hornstra H, Keim P, Pearson T, Johnson AJ. Estimated herd prevalence and sequence types of Coxiella burnetii in bulk tank milk samples from commercial dairies in Indiana. Bmc Veterinary Research. 11: 186. PMID 26248712 DOI: 10.1186/s12917-015-0517-3 |
0.599 |
|
| 2015 |
Struve C, Roe CC, Stegger M, Stahlhut SG, Hansen DS, Engelthaler DM, Andersen PS, Driebe EM, Keim P, Krogfelt KA. Mapping the Evolution of Hypervirulent Klebsiella pneumoniae. Mbio. 6: e00630. PMID 26199326 DOI: 10.1128/Mbio.00630-15 |
0.634 |
|
| 2015 |
Bowers JR, Kitchel B, Driebe EM, MacCannell DR, Roe C, Lemmer D, de Man T, Rasheed JK, Engelthaler DM, Keim P, Limbago BM. Genomic Analysis of the Emergence and Rapid Global Dissemination of the Clonal Group 258 Klebsiella pneumoniae Pandemic. Plos One. 10: e0133727. PMID 26196384 DOI: 10.1371/Journal.Pone.0133727 |
0.631 |
|
| 2015 |
Driebe EM, Sahl JW, Roe C, Bowers JR, Schupp JM, Gillece JD, Kelley E, Price LB, Pearson TR, Hepp CM, Brzoska PM, Cummings CA, Furtado MR, Andersen PS, Stegger M, ... Keim PS, et al. Using Whole Genome Analysis to Examine Recombination across Diverse Sequence Types of Staphylococcus aureus. Plos One. 10: e0130955. PMID 26161978 DOI: 10.1371/Journal.Pone.0130955 |
0.76 |
|
| 2015 |
Sahl JW, Schupp JM, Rasko DA, Colman RE, Foster JT, Keim P. Phylogenetically typing bacterial strains from partial SNP genotypes observed from direct sequencing of clinical specimen metagenomic data. Genome Medicine. 7: 52. PMID 26136847 DOI: 10.1186/S13073-015-0176-9 |
0.317 |
|
| 2015 |
Ginther JL, Mayo M, Warrington SD, Kaestli M, Mullins T, Wagner DM, Currie BJ, Tuanyok A, Keim P. Identification of Burkholderia pseudomallei Near-Neighbor Species in the Northern Territory of Australia. Plos Neglected Tropical Diseases. 9: e0003892. PMID 26121041 DOI: 10.1371/Journal.Pntd.0003892 |
0.414 |
|
| 2015 |
Liu CM, Hungate BA, Tobian AA, Ravel J, Prodger JL, Serwadda D, Kigozi G, Galiwango RM, Nalugoda F, Keim P, Wawer MJ, Price LB, Gray RH. Penile Microbiota and Female Partner Bacterial Vaginosis in Rakai, Uganda. Mbio. 6. PMID 26081632 DOI: 10.1128/Mbio.00589-15 |
0.524 |
|
| 2015 |
Riehm JM, Projahn M, Vogler AJ, Rajerison M, Andersen G, Hall CM, Zimmermann T, Soanandrasana R, Andrianaivoarimanana V, Straubinger RK, Nottingham R, Keim P, Wagner DM, Scholz HC. Diverse Genotypes of Yersinia pestis Caused Plague in Madagascar in 2007. Plos Neglected Tropical Diseases. 9: e0003844. PMID 26069964 DOI: 10.1371/Journal.Pntd.0003844 |
0.709 |
|
| 2015 |
Colman RE, Schupp JM, Hicks ND, Smith DE, Buchhagen JL, Valafar F, Crudu V, Romancenco E, Noroc E, Jackson L, Catanzaro DG, Rodwell TC, Catanzaro A, Keim P, Engelthaler DM. Detection of Low-Level Mixed-Population Drug Resistance in Mycobacterium tuberculosis Using High Fidelity Amplicon Sequencing. Plos One. 10: e0126626. PMID 25970423 DOI: 10.1371/Journal.Pone.0126626 |
0.614 |
|
| 2015 |
Smet B, Mayo M, Peeters C, Zlosnik JE, Spilker T, Hird TJ, LiPuma JJ, Kidd TJ, Kaestli M, Ginther JL, Wagner DM, Keim P, Bell SC, Jacobs JA, Currie BJ, et al. Burkholderia stagnalis sp. nov. and Burkholderia territorii sp. nov., two novel Burkholderia cepacia complex species from environmental and human sources. International Journal of Systematic and Evolutionary Microbiology. PMID 25872960 DOI: 10.1099/Ijs.0.000251 |
0.424 |
|
| 2015 |
Sahl JW, Allender CJ, Colman RE, Califf KJ, Schupp JM, Currie BJ, Van Zandt KE, Gelhaus HC, Keim P, Tuanyok A. Genomic characterization of Burkholderia pseudomallei isolates selected for medical countermeasures testing: comparative genomics associated with differential virulence. Plos One. 10: e0121052. PMID 25803742 DOI: 10.1371/Journal.Pone.0121052 |
0.469 |
|
| 2015 |
Austin CR, Goodyear AW, Bartek IL, Stewart A, Sutherland MD, Silva EB, Zweifel A, Vitko NP, Tuanyok A, Highnam G, Mittelman D, Keim P, Schweizer HP, Vázquez-Torres A, Dow SW, et al. A Burkholderia pseudomallei colony variant necessary for gastric colonization. Mbio. 6. PMID 25650400 DOI: 10.1128/Mbio.02462-14 |
0.311 |
|
| 2015 |
McRobb E, Sarovich DS, Price EP, Kaestli M, Mayo M, Keim P, Currie BJ. Tracing melioidosis back to the source: using whole-genome sequencing to investigate an outbreak originating from a contaminated domestic water supply. Journal of Clinical Microbiology. 53: 1144-8. PMID 25631791 DOI: 10.1128/Jcm.03453-14 |
0.461 |
|
| 2015 |
Özsürekci Y, Birdsell DN, Çelik M, Karada?-Öncel E, Johansson A, Forsman M, Vogler AJ, Keim P, Ceyhan M, Wagner DM. Diverse Francisella tularensis strains and oropharyngeal tularemia, Turkey. Emerging Infectious Diseases. 21: 173-5. PMID 25531237 DOI: 10.3201/Eid2101.141087 |
0.683 |
|
| 2015 |
Deng X, Shariat N, Driebe EM, Roe CC, Tolar B, Trees E, Keim P, Zhang W, Dudley EG, Fields PI, Engelthaler DM. Comparative analysis of subtyping methods against a whole-genome-sequencing standard for Salmonella enterica serotype Enteritidis. Journal of Clinical Microbiology. 53: 212-8. PMID 25378576 DOI: 10.1128/Jcm.02332-14 |
0.656 |
|
| 2015 |
Mau RL, Liu CM, Aziz M, Schwartz E, Dijkstra P, Marks JC, Price LB, Keim P, Hungate BA. Linking soil bacterial biodiversity and soil carbon stability. The Isme Journal. 9: 1477-80. PMID 25350158 DOI: 10.1038/Ismej.2014.205 |
0.513 |
|
| 2015 |
Price EP, Sarovich DS, Viberg L, Mayo M, Kaestli M, Tuanyok A, Foster JT, Keim P, Pearson T, Currie BJ. Whole-genome sequencing of Burkholderia pseudomallei isolates from an unusual melioidosis case identifies a polyclonal infection with the same multilocus sequence type. Journal of Clinical Microbiology. 53: 282-6. PMID 25339397 DOI: 10.1128/Jcm.02560-14 |
0.644 |
|
| 2015 |
Litvintseva AP, Marsden-Haug N, Hurst S, Hill H, Gade L, Driebe EM, Ralston C, Roe C, Barker BM, Goldoft M, Keim P, Wohrle R, Thompson GR, Engelthaler DM, Brandt ME, et al. Valley fever: finding new places for an old disease: coccidioides immitis found in Washington State soil associated with recent human infection. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 60: e1-3. PMID 25165087 DOI: 10.1093/Cid/Ciu681 |
0.599 |
|
| 2015 |
Colman RE, Schupp JM, Hicks ND, Smith DE, Buchhagen JL, Valafar F, Crudu V, Romancenco E, Noroc E, Jackson L, Catanzaro DG, Rodwell TC, Catanzaro A, Keim P, Engelthaler DM. Detection of low-level mixed-population drug resistance in Mycobacterium tuberculosis using high fidelity amplicon sequencing Plos One. 10. DOI: 10.1371/journal.pone.0126626 |
0.518 |
|
| 2015 |
Riehm JM, Projahn M, Vogler AJ, Rajerison M, Andersen G, Hall CM, Zimmermann T, Soanandrasana R, Andrianaivoarimanana V, Straubinger RK, Nottingham R, Keim P, Wagner DM, Scholz HC. Diverse genotypes of Yersinia pestis caused plague in Madagascar in 2007 Plos Neglected Tropical Diseases. 9. DOI: 10.1371/journal.pntd.0003844 |
0.684 |
|
| 2015 |
Struve C, Roe CC, Stegger M, Stahlhut SG, Hansen DS, Engelthaler DM, Andersen PS, Driebe EM, Keim P, Krogfelt KA. Mapping the evolution of hypervirulent Klebsiella pneumoniae Mbio. 6. DOI: 10.1128/mBio.00630-15 |
0.474 |
|
| 2014 |
Muller EE, Pinel N, Laczny CC, Hoopmann MR, Narayanasamy S, Lebrun LA, Roume H, Lin J, May P, Hicks ND, Heintz-Buschart A, Wampach L, Liu CM, Price LB, Gillece JD, ... ... Keim PS, et al. Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage. Nature Communications. 5: 5603. PMID 25424998 DOI: 10.1038/Ncomms6603 |
0.515 |
|
| 2014 |
Wahab T, Birdsell DN, Hjertqvist M, Mitchell CL, Wagner DM, Keim PS, Hedenström I, Löfdahl S. Insights to genetic characterization tools for epidemiological tracking of Francisella tularensis in Sweden. Plos One. 9: e112167. PMID 25401326 DOI: 10.1371/Journal.Pone.0112167 |
0.363 |
|
| 2014 |
Eppinger M, Pearson T, Koenig SS, Pearson O, Hicks N, Agrawal S, Sanjar F, Galens K, Daugherty S, Crabtree J, Hendriksen RS, Price LB, Upadhyay BP, Shakya G, Fraser CM, ... ... Keim PS, et al. Genomic epidemiology of the Haitian cholera outbreak: a single introduction followed by rapid, extensive, and continued spread characterized the onset of the epidemic. Mbio. 5: e01721. PMID 25370488 DOI: 10.1128/Mbio.01721-14 |
0.643 |
|
| 2014 |
Rawat A, Engelthaler DM, Driebe EM, Keim P, Foster JT. MetaGeniE: characterizing human clinical samples using deep metagenomic sequencing. Plos One. 9: e110915. PMID 25365329 DOI: 10.1371/Journal.Pone.0110915 |
0.642 |
|
| 2014 |
Scholz HC, Pearson T, Hornstra H, Projahn M, Terzioglu R, Wernery R, Georgi E, Riehm JM, Wagner DM, Keim PS, Joseph M, Johnson B, Kinne J, Jose S, Hepp CM, et al. Genotyping of Burkholderia mallei from an outbreak of glanders in Bahrain suggests multiple introduction events. Plos Neglected Tropical Diseases. 8: e3195. PMID 25255232 DOI: 10.1371/Journal.Pntd.0003195 |
0.666 |
|
| 2014 |
Wendt JM, Kaul D, Limbago BM, Ramesh M, Cohle S, Denison AM, Driebe EM, Rasheed JK, Zaki SR, Blau DM, Paddock CD, McDougal LK, Engelthaler DM, Keim PS, Roe CC, et al. Transmission of methicillin-resistant Staphylococcus aureus infection through solid organ transplantation: confirmation via whole genome sequencing. American Journal of Transplantation : Official Journal of the American Society of Transplantation and the American Society of Transplant Surgeons. 14: 2633-9. PMID 25250717 DOI: 10.1111/Ajt.12898 |
0.529 |
|
| 2014 |
Birdsell DN, Vogler AJ, Buchhagen J, Clare A, Kaufman E, Naumann A, Driebe E, Wagner DM, Keim PS. TaqMan real-time PCR assays for single-nucleotide polymorphisms which identify Francisella tularensis and its subspecies and subpopulations. Plos One. 9: e107964. PMID 25238067 DOI: 10.1371/Journal.Pone.0107964 |
0.674 |
|
| 2014 |
Okinaka RT, Challacombe J, Drees K, Birdsell DN, Janke N, Naumann A, Seymour M, Hornstra H, Schupp J, Sahl J, Foster JT, Pearson T, Turnbull P, Keim P. Genome Sequence of Bacillus anthracis STI, a Sterne-Like Georgian/Soviet Vaccine Strain. Genome Announcements. 2. PMID 25237016 DOI: 10.1128/Genomea.00853-14 |
0.605 |
|
| 2014 |
Gyuranecz M, Sulyok K, Balla E, Mag T, Balazs A, Simor Z, Denes B, Hornok S, Bajnoczi P, Hornstra H, Pearson T, Keim P, Dan A. Q fever epidemic in Hungary, April to July 2013. Euro Surveillance : Bulletin Europã©En Sur Les Maladies Transmissibles = European Communicable Disease Bulletin. 19. PMID 25108535 DOI: 10.2807/1560-7917.Es2014.19.30.20863 |
0.616 |
|
| 2014 |
Johansson A, Lärkeryd A, Widerström M, Mörtberg S, Myrtännäs K, Ohrman C, Birdsell D, Keim P, Wagner DM, Forsman M, Larsson P. An outbreak of respiratory tularemia caused by diverse clones of Francisella tularensis. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 59: 1546-53. PMID 25097081 DOI: 10.1093/Cid/Ciu621 |
0.344 |
|
| 2014 |
Khmaladze E, Birdsell DN, Naumann AA, Hochhalter CB, Seymour ML, Nottingham R, Beckstrom-Sternberg SM, Beckstrom-Sternberg J, Nikolich MP, Chanturia G, Zhgenti E, Zakalashvili M, Malania L, Babuadze G, Tsertsvadze N, ... ... Keim P, et al. Phylogeography of Bacillus anthracis in the country of Georgia shows evidence of population structuring and is dissimilar to other regional genotypes. Plos One. 9: e102651. PMID 25047912 DOI: 10.1371/Journal.Pone.0102651 |
0.665 |
|
| 2014 |
Engelthaler DM, Hicks ND, Gillece JD, Roe CC, Schupp JM, Driebe EM, Gilgado F, Carriconde F, Trilles L, Firacative C, Ngamskulrungroj P, Castañeda E, Lazera Mdos S, Melhem MS, Pérez-Bercoff A, ... ... Keim P, et al. Cryptococcus gattii in North American Pacific Northwest: whole-population genome analysis provides insights into species evolution and dispersal. Mbio. 5: e01464-14. PMID 25028429 DOI: 10.1128/Mbio.01464-14 |
0.659 |
|
| 2014 |
Wang Y, Peng Y, Hai R, Xia L, Li H, Zhang Z, Cai H, Liang Y, Shen X, Yu D, Birdsell D, Wagner DM, Keim P. Diversity of Francisella tularensis subsp. holarctica lineages, China. Emerging Infectious Diseases. 20: 1191-4. PMID 24963721 DOI: 10.3201/Eid2007.130931 |
0.421 |
|
| 2014 |
Litvintseva AP, Hurst S, Gade L, Frace MA, Hilsabeck R, Schupp JM, Gillece JD, Roe C, Smith D, Keim P, Lockhart SR, Changayil S, Weil MR, MacCannell DR, Brandt ME, et al. Whole-genome analysis of Exserohilum rostratum from an outbreak of fungal meningitis and other infections. Journal of Clinical Microbiology. 52: 3216-22. PMID 24951807 DOI: 10.1128/Jcm.00936-14 |
0.664 |
|
| 2014 |
Kelley EJ, Driebe EM, Etienne K, Brandt ME, Schupp JM, Gillece JD, Trujillo JS, Lockhart SR, Deak E, Keim PS, Engelthaler DM. Real-time PCR assays for genotyping of Cryptococcus gattii in North America. Bmc Microbiology. 14: 125. PMID 24886039 DOI: 10.1186/1471-2180-14-125 |
0.615 |
|
| 2014 |
Sulyok KM, Kreizinger Z, Hornstra HM, Pearson T, Szigeti A, Dán Ã, Balla E, Keim PS, Gyuranecz M. Genotyping of Coxiella burnetii from domestic ruminants and human in Hungary: indication of various genotypes. Bmc Veterinary Research. 10: 107. PMID 24885415 DOI: 10.1186/1746-6148-10-107 |
0.618 |
|
| 2014 |
Birdsell DN, Johansson A, Öhrman C, Kaufman E, Molins C, Pearson T, Gyuranecz M, Naumann A, Vogler AJ, Myrtennäs K, Larsson P, Forsman M, Sjödin A, Gillece JD, Schupp J, ... ... Keim P, et al. Francisella tularensis subsp. tularensis group A.I, United States. Emerging Infectious Diseases. 20: 861-5. PMID 24755401 DOI: 10.3201/Eid2005.131559 |
0.787 |
|
| 2014 |
Sahl JW, Caporaso JG, Rasko DA, Keim P. The large-scale blast score ratio (LS-BSR) pipeline: a method to rapidly compare genetic content between bacterial genomes. Peerj. 2: e332. PMID 24749011 DOI: 10.7717/Peerj.332 |
0.416 |
|
| 2014 |
Pearson T, Hornstra HM, Hilsabeck R, Gates LT, Olivas SM, Birdsell DM, Hall CM, German S, Cook JM, Seymour ML, Priestley RA, Kondas AV, Clark Friedman CL, Price EP, Schupp JM, ... ... Keim P, et al. High prevalence and two dominant host-specific genotypes of Coxiella burnetii in U.S. milk. Bmc Microbiology. 14: 41. PMID 24533573 DOI: 10.1186/1471-2180-14-41 |
0.735 |
|
| 2014 |
Wagner DM, Klunk J, Harbeck M, Devault A, Waglechner N, Sahl JW, Enk J, Birdsell DN, Kuch M, Lumibao C, Poinar D, Pearson T, Fourment M, Golding B, Riehm JM, ... ... Keim PS, et al. Yersinia pestis and the plague of Justinian 541-543 AD: a genomic analysis. The Lancet. Infectious Diseases. 14: 319-26. PMID 24480148 DOI: 10.1016/S1473-3099(13)70323-2 |
0.619 |
|
| 2014 |
Wattam AR, Foster JT, Mane SP, Beckstrom-Sternberg SM, Beckstrom-Sternberg JM, Dickerman AW, Keim P, Pearson T, Shukla M, Ward DV, Williams KP, Sobral BW, Tsolis RM, Whatmore AM, O'Callaghan D. Comparative phylogenomics and evolution of the Brucellae reveal a path to virulence. Journal of Bacteriology. 196: 920-30. PMID 24336939 DOI: 10.1128/Jb.01091-13 |
0.61 |
|
| 2014 |
Podin Y, Sarovich DS, Price EP, Kaestli M, Mayo M, Hii K, Ngian H, Wong S, Wong I, Wong J, Mohan A, Ooi M, Fam T, Wong J, Tuanyok A, ... Keim P, et al. Burkholderia pseudomallei isolates from Sarawak, Malaysian Borneo, are predominantly susceptible to aminoglycosides and macrolides. Antimicrobial Agents and Chemotherapy. 58: 162-6. PMID 24145517 DOI: 10.1128/Aac.01842-13 |
0.459 |
|
| 2014 |
Vogler AJ, Jones S, Keim P. Incident Reporting and Biosafety Training in a BSL-3 Select Agent Facility Applied Biosafety. 19: 192-200. DOI: 10.1177/153567601401900403 |
0.616 |
|
| 2013 |
Busch JD, Van Andel R, Stone NE, Cobble KR, Nottingham R, Lee J, VerSteeg M, Corcoran J, Cordova J, Van Pelt W, Shuey MM, Foster JT, Schupp JM, Beckstrom-Sternberg S, Beckstrom-Sternberg J, ... Keim P, et al. The innate immune response may be important for surviving plague in wild Gunnison's prairie dogs. Journal of Wildlife Diseases. 49: 920-31. PMID 24502719 DOI: 10.7589/2012-08-209 |
0.312 |
|
| 2013 |
Price LB, Johnson JR, Aziz M, Clabots C, Johnston B, Tchesnokova V, Nordstrom L, Billig M, Chattopadhyay S, Stegger M, Andersen PS, Pearson T, Riddell K, Rogers P, Scholes D, ... ... Keim P, et al. The epidemic of extended-spectrum-β-lactamase-producing Escherichia coli ST131 is driven by a single highly pathogenic subclone, H30-Rx. Mbio. 4: e00377-13. PMID 24345742 DOI: 10.1128/Mbio.00377-13 |
0.657 |
|
| 2013 |
Andersen PS, Stegger M, Aziz M, Contente-Cuomo T, Gibbons HS, Keim P, Sokurenko EV, Johnson JR, Price LB. Complete Genome Sequence of the Epidemic and Highly Virulent CTX-M-15-Producing H30-Rx Subclone of Escherichia coli ST131. Genome Announcements. 1. PMID 24309736 DOI: 10.1128/Genomea.00988-13 |
0.376 |
|
| 2013 |
Muehlbauer GJ, Staswick PE, Specht JE, Graef GL, Shoemaker RC, Keim P. RFLP mapping using near-isogenic lines in the soybean [Glycine max (L.) Merr]. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 81: 189-98. PMID 24221202 DOI: 10.1007/Bf00215722 |
0.337 |
|
| 2013 |
Stone JK, Johnson SL, Bruce DC, Detter JC, Mayo M, Currie BJ, Gelhaus HC, Keim P, Tuanyok A. Complete Genome Sequence of the Encephalomyelitic Burkholderia pseudomallei Strain MSHR305. Genome Announcements. 1. PMID 23969058 DOI: 10.1128/Genomea.00656-13 |
0.39 |
|
| 2013 |
Price EP, Sarovich DS, Webb JR, Ginther JL, Mayo M, Cook JM, Seymour ML, Kaestli M, Theobald V, Hall CM, Busch JD, Foster JT, Keim P, Wagner DM, Tuanyok A, et al. Accurate and rapid identification of the Burkholderia pseudomallei near-neighbour, Burkholderia ubonensis, using real-time PCR. Plos One. 8: e71647. PMID 23967229 DOI: 10.1371/Journal.Pone.0071647 |
0.639 |
|
| 2013 |
Stegger M, Driebe EM, Roe C, Lemmer D, Bowers JR, Engelthaler DM, Keim P, Andersen PS. Genome Sequence of Staphylococcus aureus Strain CA-347, a USA600 Methicillin-Resistant Isolate. Genome Announcements. 1. PMID 23887918 DOI: 10.1128/Genomea.00517-13 |
0.595 |
|
| 2013 |
Engelthaler DM, Kelley E, Driebe EM, Bowers J, Eberhard CF, Trujillo J, Decruyenaere F, Schupp JM, Mossong J, Keim P, Even J. Rapid and robust phylotyping of spa t003, a dominant MRSA clone in Luxembourg and other European countries. Bmc Infectious Diseases. 13: 339. PMID 23879266 DOI: 10.1186/1471-2334-13-339 |
0.662 |
|
| 2013 |
Price EP, Sarovich DS, Mayo M, Tuanyok A, Drees KP, Kaestli M, Beckstrom-Sternberg SM, Babic-Sternberg JS, Kidd TJ, Bell SC, Keim P, Pearson T, Currie BJ. Within-host evolution of Burkholderia pseudomallei over a twelve-year chronic carriage infection. Mbio. 4. PMID 23860767 DOI: 10.1128/Mbio.00388-13 |
0.662 |
|
| 2013 |
Liu CM, Soldanova K, Nordstrom L, Dwan MG, Moss OL, Contente-Cuomo TL, Keim P, Price LB, Lane AP. Medical therapy reduces microbiota diversity and evenness in surgically recalcitrant chronic rhinosinusitis. International Forum of Allergy & Rhinology. 3: 775-81. PMID 23843343 DOI: 10.1002/Alr.21195 |
0.532 |
|
| 2013 |
Sarovich DS, Colman RE, Price EP, Massire C, Von Schulze AT, Waddell V, Anderson SM, Ecker DJ, Liguori AP, Engelthaler DM, Sampath R, Keim P, Eshoo MW, Wagner DM. Molecular genotyping of Acinetobacter spp. isolated in Arizona, USA, using multilocus PCR and mass spectrometry. Journal of Medical Microbiology. 62: 1295-300. PMID 23741021 DOI: 10.1099/Jmm.0.052381-0 |
0.587 |
|
| 2013 |
Pearson T, Hornstra HM, Sahl JW, Schaack S, Schupp JM, Beckstrom-Sternberg SM, O'Neill MW, Priestley RA, Champion MD, Beckstrom-Sternberg JS, Kersh GJ, Samuel JE, Massung RF, Keim P. When outgroups fail; phylogenomics of rooting the emerging pathogen, Coxiella burnetii. Systematic Biology. 62: 752-62. PMID 23736103 DOI: 10.1093/Sysbio/Syt038 |
0.653 |
|
| 2013 |
Sahl JW, Stone JK, Gelhaus HC, Warren RL, Cruttwell CJ, Funnell SG, Keim P, Tuanyok A. Genome Sequence of Burkholderia pseudomallei NCTC 13392. Genome Announcements. 1. PMID 23704173 DOI: 10.1128/Genomea.00183-13 |
0.363 |
|
| 2013 |
Birdsell DN, Antwerpen M, Keim P, Hanczaruk M, Foster JT, Sahl JW, Wagner DM, Grass G. Draft Genome Sequences of Two Bulgarian Bacillus anthracis Strains. Genome Announcements. 1: e0015213. PMID 23599294 DOI: 10.1128/Genomea.00152-13 |
0.348 |
|
| 2013 |
Liu CM, Hungate BA, Tobian AA, Serwadda D, Ravel J, Lester R, Kigozi G, Aziz M, Galiwango RM, Nalugoda F, Contente-Cuomo TL, Wawer MJ, Keim P, Gray RH, Price LB. Male circumcision significantly reduces prevalence and load of genital anaerobic bacteria. Mbio. 4: e00076. PMID 23592260 DOI: 10.1128/Mbio.00076-13 |
0.514 |
|
| 2013 |
Gyuranecz M, Rannals BD, Allen CA, Jánosi S, Keim PS, Foster JT. Within-host evolution of Brucella canis during a canine brucellosis outbreak in a kennel. Bmc Veterinary Research. 9: 76. PMID 23587163 DOI: 10.1186/1746-6148-9-76 |
0.335 |
|
| 2013 |
Trueba G, Garcés V, V VB, Colman RE, Seymour M, Vogler AJ, Keim P. Escherichia coli O157:H7 in Ecuador: animal reservoirs, yet no human disease. Vector Borne and Zoonotic Diseases (Larchmont, N.Y.). 13: 295-8. PMID 23473224 DOI: 10.1089/Vbz.2012.1128 |
0.656 |
|
| 2013 |
Vogler AJ, Chan F, Nottingham R, Andersen G, Drees K, Beckstrom-Sternberg SM, Wagner DM, Chanteau S, Keim P. A decade of plague in Mahajanga, Madagascar: insights into the global maritime spread of pandemic plague. Mbio. 4: e00623-12. PMID 23404402 DOI: 10.1128/Mbio.00623-12 |
0.752 |
|
| 2013 |
Sahl JW, Gillece JD, Schupp JM, Waddell VG, Driebe EM, Engelthaler DM, Keim P. Evolution of a pathogen: a comparative genomics analysis identifies a genetic pathway to pathogenesis in Acinetobacter. Plos One. 8: e54287. PMID 23365658 DOI: 10.1371/Journal.Pone.0054287 |
0.643 |
|
| 2013 |
Duncan DD, Vogler AJ, Wolcott MJ, Li F, Sarovich DS, Birdsell DN, Watson LM, Hall TA, Sampath R, Housley R, Blyn LB, Hofstadler SA, Ecker DJ, Keim P, Wagner DM, et al. Identification and typing of Francisella tularensis with a highly automated genotyping assay. Letters in Applied Microbiology. 56: 128-34. PMID 23121644 DOI: 10.1111/Lam.12022 |
0.681 |
|
| 2013 |
Perego UA, Achilli A, Ekins JE, Milani L, Lari M, Pilli E, Brown A, Price EP, Wolken SR, Matthews M, Allen CA, Pearson TR, Angerhofer N, Caramelli D, Kupferschmid T, ... Keim PS, et al. The Mountain Meadows Massacre and "poisoned springs": scientific testing of the more recent, anthrax theory. International Journal of Legal Medicine. 127: 77-83. PMID 22395921 DOI: 10.1007/s00414-012-0681-y |
0.547 |
|
| 2013 |
Wymore AS, Compson ZG, Liu CM, Price LB, Whitham TG, Keim P, Marks JC. Contrasting rRNA gene abundance patterns for aquatic fungi and bacteria in response to leaf-litter chemistry Freshwater Science. 32: 663-672. DOI: 10.1899/12-122.1 |
0.528 |
|
| 2012 |
Etienne KA, Gillece J, Hilsabeck R, Schupp JM, Colman R, Lockhart SR, Gade L, Thompson EH, Sutton DA, Neblett-Fanfair R, Park BJ, Turabelidze G, Keim P, Brandt ME, Deak E, et al. Whole genome sequence typing to investigate the Apophysomyces outbreak following a tornado in Joplin, Missouri, 2011. Plos One. 7: e49989. PMID 23209631 DOI: 10.1371/Journal.Pone.0049989 |
0.686 |
|
| 2012 |
Muller EE, Pinel N, Gillece JD, Schupp JM, Price LB, Engelthaler DM, Levantesi C, Tandoi V, Luong K, Baliga NS, Korlach J, Keim PS, Wilmes P. Genome sequence of "Candidatus Microthrix parvicella" Bio17-1, a long-chain-fatty-acid-accumulating filamentous actinobacterium from a biological wastewater treatment plant. Journal of Bacteriology. 194: 6670-1. PMID 23144412 DOI: 10.1128/Jb.01765-12 |
0.555 |
|
| 2012 |
Liu CM, Kachur S, Dwan MG, Abraham AG, Aziz M, Hsueh PR, Huang YT, Busch JD, Lamit LJ, Gehring CA, Keim P, Price LB. FungiQuant: a broad-coverage fungal quantitative real-time PCR assay. Bmc Microbiology. 12: 255. PMID 23136846 DOI: 10.1186/1471-2180-12-255 |
0.597 |
|
| 2012 |
Stone JK, Mayo M, Grasso SA, Ginther JL, Warrington SD, Allender CJ, Doyle A, Georgia S, Kaestli M, Broomall SM, Karavis MA, Insalaco JM, Hubbard KS, McNew LA, Gibbons HS, ... ... Keim P, et al. Detection of Burkholderia pseudomallei O-antigen serotypes in near-neighbor species. Bmc Microbiology. 12: 250. PMID 23126230 DOI: 10.1186/1471-2180-12-250 |
0.302 |
|
| 2012 |
Sarovich DS, Price EP, Limmathurotsakul D, Cook JM, Von Schulze AT, Wolken SR, Keim P, Peacock SJ, Pearson T. Development of ceftazidime resistance in an acute Burkholderia pseudomallei infection. Infection and Drug Resistance. 5: 129-32. PMID 22977307 DOI: 10.2147/Idr.S35529 |
0.634 |
|
| 2012 |
Price EP, Seymour ML, Sarovich DS, Latham J, Wolken SR, Mason J, Vincent G, Drees KP, Beckstrom-Sternberg SM, Phillippy AM, Koren S, Okinaka RT, Chung WK, Schupp JM, Wagner DM, ... ... Keim P, et al. Molecular epidemiologic investigation of an anthrax outbreak among heroin users, Europe. Emerging Infectious Diseases. 18: 1307-13. PMID 22840345 DOI: 10.3201/Eid1808.111343 |
0.665 |
|
| 2012 |
Foster JT, Price LB, Beckstrom-Sternberg SM, Pearson T, Brown WD, Kiesling DM, Allen CA, Liu CM, Beckstrom-Sternberg J, Roberto FF, Keim P. Genotyping of Brucella species using clade specific SNPs. Bmc Microbiology. 12: 110. PMID 22712667 DOI: 10.1186/1471-2180-12-110 |
0.78 |
|
| 2012 |
Price EP, Dale JL, Cook JM, Sarovich DS, Seymour ML, Ginther JL, Kaufman EL, Beckstrom-Sternberg SM, Mayo M, Kaestli M, Glass MB, Gee JE, Wuthiekanun V, Warner JM, Baker A, ... ... Keim P, et al. Development and validation of Burkholderia pseudomallei-specific real-time PCR assays for clinical, environmental or forensic detection applications. Plos One. 7: e37723. PMID 22624061 DOI: 10.1371/Journal.Pone.0037723 |
0.643 |
|
| 2012 |
Liu CM, Aziz M, Kachur S, Hsueh PR, Huang YT, Keim P, Price LB. BactQuant: an enhanced broad-coverage bacterial quantitative real-time PCR assay. Bmc Microbiology. 12: 56. PMID 22510143 DOI: 10.1186/1471-2180-12-56 |
0.606 |
|
| 2012 |
Kaestli M, Richardson LJ, Colman RE, Tuanyok A, Price EP, Bowers JR, Mayo M, Kelley E, Seymour ML, Sarovich DS, Pearson T, Engelthaler DM, Wagner DM, Keim PS, Schupp JM, et al. Comparison of TaqMan PCR assays for detection of the melioidosis agent Burkholderia pseudomallei in clinical specimens. Journal of Clinical Microbiology. 50: 2059-62. PMID 22442327 DOI: 10.1128/Jcm.06737-11 |
0.694 |
|
| 2012 |
Birdsell DN, Pearson T, Price EP, Hornstra HM, Nera RD, Stone N, Gruendike J, Kaufman EL, Pettus AH, Hurbon AN, Buchhagen JL, Harms NJ, Chanturia G, Gyuranecz M, Wagner DM, ... Keim PS, et al. Melt analysis of mismatch amplification mutation assays (Melt-MAMA): a functional study of a cost-effective SNP genotyping assay in bacterial models. Plos One. 7: e32866. PMID 22438886 DOI: 10.1371/Journal.Pone.0032866 |
0.605 |
|
| 2012 |
Sarovich DS, Price EP, Von Schulze AT, Cook JM, Mayo M, Watson LM, Richardson L, Seymour ML, Tuanyok A, Engelthaler DM, Pearson T, Peacock SJ, Currie BJ, Keim P, Wagner DM. Characterization of ceftazidime resistance mechanisms in clinical isolates of Burkholderia pseudomallei from Australia. Plos One. 7: e30789. PMID 22363490 DOI: 10.1371/Journal.Pone.0030789 |
0.745 |
|
| 2012 |
Price LB, Stegger M, Hasman H, Aziz M, Larsen J, Andersen PS, Pearson T, Waters AE, Foster JT, Schupp J, Gillece J, Driebe E, Liu CM, Springer B, Zdovc I, ... ... Keim P, et al. Staphylococcus aureus CC398: host adaptation and emergence of methicillin resistance in livestock. Mbio. 3. PMID 22354957 DOI: 10.1128/Mbio.00305-11 |
0.752 |
|
| 2012 |
Qiu S, Xu X, Wang Y, Yang G, Wang Z, Wang H, Zhang L, Liu N, Chen C, Liu W, Li J, Su W, Jia L, Wang L, Jin H, ... Keim P, et al. Emergence of resistance to fluoroquinolones and third-generation cephalosporins in Shigella flexneri subserotype 1c isolates from China. Clinical Microbiology and Infection : the Official Publication of the European Society of Clinical Microbiology and Infectious Diseases. 18: E95-8. PMID 22329572 DOI: 10.1111/J.1469-0691.2012.03768.X |
0.385 |
|
| 2012 |
Gyuranecz M, Birdsell DN, Splettstoesser W, Seibold E, Beckstrom-Sternberg SM, Makrai L, Fodor L, Fabbi M, Vicari N, Johansson A, Busch JD, Vogler AJ, Keim P, Wagner DM. Phylogeography of Francisella tularensis subsp. holarctica, Europe. Emerging Infectious Diseases. 18: 290-3. PMID 22305204 DOI: 10.3201/Eid1802.111305 |
0.704 |
|
| 2012 |
Bowers JR, Driebe EM, Nibecker JL, Wojack BR, Sarovich DS, Wong AH, Brzoska PM, Hubert N, Knadler A, Watson LM, Wagner DM, Furtado MR, Saubolle M, Engelthaler DM, Keim PS. Dominance of multidrug resistant CC271 clones in macrolide-resistant streptococcus pneumoniae in Arizona. Bmc Microbiology. 12: 12. PMID 22251616 DOI: 10.1186/1471-2180-12-12 |
0.563 |
|
| 2012 |
Tuanyok A, Stone JK, Mayo M, Kaestli M, Gruendike J, Georgia S, Warrington S, Mullins T, Allender CJ, Wagner DM, Chantratita N, Peacock SJ, Currie BJ, Keim P. The genetic and molecular basis of O-antigenic diversity in Burkholderia pseudomallei lipopolysaccharide. Plos Neglected Tropical Diseases. 6: e1453. PMID 22235357 DOI: 10.1371/Journal.Pntd.0001453 |
0.339 |
|
| 2012 |
Richardson LJ, Kaestli M, Mayo M, Bowers JR, Tuanyok A, Schupp J, Engelthaler D, Wagner DM, Keim PS, Currie BJ. Towards a rapid molecular diagnostic for melioidosis: Comparison of DNA extraction methods from clinical specimens. Journal of Microbiological Methods. 88: 179-81. PMID 22108495 DOI: 10.1016/J.Mimet.2011.10.023 |
0.491 |
|
| 2011 |
Hoopes JD, Driebe EM, Kelley E, Engelthaler DM, Keim PS, Perelson AS, Rong L, Went GT, Nguyen JT. Triple combination antiviral drug (TCAD) composed of amantadine, oseltamivir, and ribavirin impedes the selection of drug-resistant influenza A virus. Plos One. 6: e29778. PMID 22220216 DOI: 10.1371/Journal.Pone.0029778 |
0.506 |
|
| 2011 |
Liguori AP, Warrington SD, Ginther JL, Pearson T, Bowers J, Glass MB, Mayo M, Wuthiekanun V, Engelthaler D, Peacock SJ, Currie BJ, Wagner DM, Keim P, Tuanyok A. Diversity of 16S-23S rDNA internal transcribed spacer (ITS) reveals phylogenetic relationships in Burkholderia pseudomallei and its near-neighbors. Plos One. 6: e29323. PMID 22195045 DOI: 10.1371/Journal.Pone.0029323 |
0.764 |
|
| 2011 |
Dale J, Price EP, Hornstra H, Busch JD, Mayo M, Godoy D, Wuthiekanun V, Baker A, Foster JT, Wagner DM, Tuanyok A, Warner J, Spratt BG, Peacock SJ, Currie BJ, ... Keim P, et al. Epidemiological tracking and population assignment of the non-clonal bacterium, Burkholderia pseudomallei. Plos Neglected Tropical Diseases. 5: e1381. PMID 22180792 DOI: 10.1371/Journal.Pntd.0001381 |
0.643 |
|
| 2011 |
Marston CK, Allen CA, Beaudry J, Price EP, Wolken SR, Pearson T, Keim P, Hoffmaster AR. Molecular epidemiology of anthrax cases associated with recreational use of animal hides and yarn in the United States. Plos One. 6: e28274. PMID 22174783 DOI: 10.1371/Journal.Pone.0028274 |
0.623 |
|
| 2011 |
Gillece JD, Schupp JM, Balajee SA, Harris J, Pearson T, Yan Y, Keim P, DeBess E, Marsden-Haug N, Wohrle R, Engelthaler DM, Lockhart SR. Whole genome sequence analysis of Cryptococcus gattii from the Pacific Northwest reveals unexpected diversity. Plos One. 6: e28550. PMID 22163313 DOI: 10.1371/Journal.Pone.0028550 |
0.767 |
|
| 2011 |
Hansen CM, Vogler AJ, Keim P, Wagner DM, Hueffer K. Tularemia in Alaska, 1938 - 2010. Acta Veterinaria Scandinavica. 53: 61. PMID 22099502 DOI: 10.1186/1751-0147-53-61 |
0.696 |
|
| 2011 |
Hornstra HM, Priestley RA, Georgia SM, Kachur S, Birdsell DN, Hilsabeck R, Gates LT, Samuel JE, Heinzen RA, Kersh GJ, Keim P, Massung RF, Pearson T. Rapid typing of Coxiella burnetii. Plos One. 6: e26201. PMID 22073151 DOI: 10.1371/Journal.Pone.0026201 |
0.69 |
|
| 2011 |
Keim PS, Aarestrup FM, Shakya G, Price LB, Hendriksen RS, Engelthaler DM, Pearson T. Reply to "South Asia instead of Nepal may be the origin of the Haitian cholera outbreak strain". Mbio. 2: e00245-11. PMID 22045990 DOI: 10.1128/Mbio.00245-11 |
0.734 |
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| 2011 |
Engelthaler DM, Bowers J, Schupp JA, Pearson T, Ginther J, Hornstra HM, Dale J, Stewart T, Sunenshine R, Waddell V, Levy C, Gillece J, Price LB, Contente T, Beckstrom-Sternberg SM, ... ... Keim P, et al. Molecular investigations of a locally acquired case of melioidosis in Southern AZ, USA. Plos Neglected Tropical Diseases. 5: e1347. PMID 22028940 DOI: 10.1371/Journal.Pntd.0001347 |
0.74 |
|
| 2011 |
Okinaka RT, Price EP, Wolken SR, Gruendike JM, Chung WK, Pearson T, Xie G, Munk C, Hill KK, Challacombe J, Ivins BE, Schupp JM, Beckstrom-Sternberg SM, Friedlander A, Keim P. An attenuated strain of Bacillus anthracis (CDC 684) has a large chromosomal inversion and altered growth kinetics. Bmc Genomics. 12: 477. PMID 21962024 DOI: 10.1186/1471-2164-12-477 |
0.683 |
|
| 2011 |
Vogler AJ, Chan F, Wagner DM, Roumagnac P, Lee J, Nera R, Eppinger M, Ravel J, Rahalison L, Rasoamanana BW, Beckstrom-Sternberg SM, Achtman M, Chanteau S, Keim P. Phylogeography and molecular epidemiology of Yersinia pestis in Madagascar. Plos Neglected Tropical Diseases. 5: e1319. PMID 21931876 DOI: 10.1371/Journal.Pntd.0001319 |
0.719 |
|
| 2011 |
Hendriksen RS, Price LB, Schupp JM, Gillece JD, Kaas RS, Engelthaler DM, Bortolaia V, Pearson T, Waters AE, Upadhyay BP, Shrestha SD, Adhikari S, Shakya G, Keim PS, Aarestrup FM. Population genetics of Vibrio cholerae from Nepal in 2010: evidence on the origin of the Haitian outbreak. Mbio. 2: e00157-11. PMID 21862630 DOI: 10.1128/Mbio.00157-11 |
0.756 |
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| 2011 |
James SH, Hartline CB, Harden EA, Driebe EM, Schupp JM, Engelthaler DM, Keim PS, Bowlin TL, Kern ER, Prichard MN. Cyclopropavir inhibits the normal function of the human cytomegalovirus UL97 kinase. Antimicrobial Agents and Chemotherapy. 55: 4682-91. PMID 21788463 DOI: 10.1016/J.Antiviral.2011.03.010 |
0.517 |
|
| 2011 |
Liu CM, Cosetti MK, Aziz M, Buchhagen JL, Contente-Cuomo TL, Price LB, Keim PS, Lalwani AK. The otologic microbiome: a study of the bacterial microbiota in a pediatric patient with chronic serous otitis media using 16SrRNA gene-based pyrosequencing. Archives of Otolaryngology--Head & Neck Surgery. 137: 664-8. PMID 21768410 DOI: 10.1001/Archoto.2011.116 |
0.513 |
|
| 2011 |
Stewart T, Engelthaler DM, Blaney DD, Tuanyok A, Wangsness E, Smith TL, Pearson T, Komatsu KK, Keim P, Currie BJ, Levy C, Sunenshine R. Epidemiology and investigation of melioidosis, Southern Arizona. Emerging Infectious Diseases. 17: 1286-8. PMID 21762589 DOI: 10.3201/Eid1707.100661 |
0.697 |
|
| 2011 |
Rivarola M, Foster JT, Chan AP, Williams AL, Rice DW, Liu X, Melake-Berhan A, Huot Creasy H, Puiu D, Rosovitz MJ, Khouri HM, Beckstrom-Sternberg SM, Allan GJ, Keim P, Ravel J, et al. Castor bean organelle genome sequencing and worldwide genetic diversity analysis. Plos One. 6: e21743. PMID 21750729 DOI: 10.1371/Journal.Pone.0021743 |
0.426 |
|
| 2011 |
Mukhopadhyay C, Kaestli M, Vandana KE, Sushma K, Mayo M, Richardson L, Tuanyok A, Keim P, Godoy D, Spratt BG, Currie BJ. Molecular characterization of clinical Burkholderia pseudomallei isolates from India. The American Journal of Tropical Medicine and Hygiene. 85: 121-3. PMID 21734136 DOI: 10.4269/ajtmh.2011.11-0166 |
0.327 |
|
| 2011 |
Chanturia G, Birdsell DN, Kekelidze M, Zhgenti E, Babuadze G, Tsertsvadze N, Tsanava S, Imnadze P, Beckstrom-Sternberg SM, Beckstrom-Sternberg JS, Champion MD, Sinari S, Gyuranecz M, Farlow J, Pettus AH, ... ... Keim P, et al. Phylogeography of Francisella tularensis subspecies holarctica from the country of Georgia. Bmc Microbiology. 11: 139. PMID 21682874 DOI: 10.1186/1471-2180-11-139 |
0.808 |
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| 2011 |
Waters AE, Contente-Cuomo T, Buchhagen J, Liu CM, Watson L, Pearce K, Foster JT, Bowers J, Driebe EM, Engelthaler DM, Keim PS, Price LB. Multidrug-Resistant Staphylococcus aureus in US Meat and Poultry. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 52: 1227-30. PMID 21498385 DOI: 10.1093/Cid/Cir181 |
0.67 |
|
| 2011 |
Baker A, Pearson T, Price EP, Dale J, Keim P, Hornstra H, Greenhill A, Padilla G, Warner J. Molecular phylogeny of Burkholderia pseudomallei from a remote region of Papua New Guinea. Plos One. 6: e18343. PMID 21483841 DOI: 10.1371/Journal.Pone.0018343 |
0.676 |
|
| 2011 |
Rasko DA, Worsham PL, Abshire TG, Stanley ST, Bannan JD, Wilson MR, Langham RJ, Decker RS, Jiang L, Read TD, Phillippy AM, Salzberg SL, Pop M, Van Ert MN, Kenefic LJ, Keim PS, et al. Bacillus anthracis comparative genome analysis in support of the Amerithrax investigation. Proceedings of the National Academy of Sciences of the United States of America. 108: 5027-32. PMID 21383169 DOI: 10.1073/Pnas.1016657108 |
0.83 |
|
| 2011 |
Engelthaler DM, Chiller T, Schupp JA, Colvin J, Beckstrom-Sternberg SM, Driebe EM, Moses T, Tembe W, Sinari S, Beckstrom-Sternberg JS, Christoforides A, Pearson JV, Carpten J, Keim P, Peterson A, et al. Next-generation sequencing of Coccidioides immitis isolated during cluster investigation. Emerging Infectious Diseases. 17: 227-32. PMID 21291593 DOI: 10.3201/Eid1702.100620 |
0.657 |
|
| 2011 |
Vogler AJ, Birdsell DN, Lee J, Vaissaire J, Doujet CL, Lapalus M, Wagner DM, Keim P. Phylogeography of Francisella tularensis ssp. holarctica in France. Letters in Applied Microbiology. 52: 177-80. PMID 21214606 DOI: 10.1111/J.1472-765X.2010.02977.X |
0.708 |
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| 2011 |
Price LB, Liu CM, Frankel YM, Melendez JH, Aziz M, Buchhagen J, Contente-Cuomo T, Engelthaler DM, Keim PS, Ravel J, Lazarus GS, Zenilman JM. Macroscale spatial variation in chronic wound microbiota: a cross-sectional study. Wound Repair and Regeneration : Official Publication of the Wound Healing Society [and] the European Tissue Repair Society. 19: 80-8. PMID 20946140 DOI: 10.1111/J.1524-475X.2010.00628.X |
0.639 |
|
| 2011 |
Paxton EH, Unitt P, Sogge MK, Whitfield M, Keim P. Winter distribution of willow flycatcher subspecies Condor. 113: 608-618. DOI: 10.1525/Cond.2011.090200 |
0.654 |
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| 2011 |
Okinaka RT, Hill KH, Pearson T, Foster JT, Vogler AJ, Tuanyok A, Wagner DM, Keim PS. Forensic Analysis in Bacterial Pathogens Microbial Forensics. 259-276. DOI: 10.1016/B978-0-12-382006-8.00016-5 |
0.645 |
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| 2011 |
Keim PS, Budowle B, Ravel J. Microbial Forensic Investigation of the Anthrax-Letter Attacks Microbial Forensics. 15-25. DOI: 10.1016/B978-0-12-382006-8.00002-5 |
0.319 |
|
| 2010 |
Bowers JR, Engelthaler DM, Ginther JL, Pearson T, Peacock SJ, Tuanyok A, Wagner DM, Currie BJ, Keim PS. BurkDiff: a real-time PCR allelic discrimination assay for Burkholderia pseudomallei and B. mallei. Plos One. 5: e15413. PMID 21103048 DOI: 10.1371/Journal.Pone.0015413 |
0.723 |
|
| 2010 |
Cummings CA, Bormann Chung CA, Fang R, Barker M, Brzoska P, Williamson PC, Beaudry J, Matthews M, Schupp J, Wagner DM, Birdsell D, Vogler AJ, Furtado MR, Keim P, Budowle B. Accurate, rapid and high-throughput detection of strain-specific polymorphisms in Bacillus anthracis and Yersinia pestis by next-generation sequencing. Investigative Genetics. 1: 5. PMID 21092340 DOI: 10.1186/2041-2223-1-5 |
0.73 |
|
| 2010 |
Greenberg DL, Busch JD, Keim P, Wagner DM. Identifying experimental surrogates for Bacillus anthracis spores: a review. Investigative Genetics. 1: 4. PMID 21092338 DOI: 10.1186/2041-2223-1-4 |
0.319 |
|
| 2010 |
Price EP, Matthews MA, Beaudry JA, Allred JL, Schupp JM, Birdsell DN, Pearson T, Keim P. Cost-effective interrogation of single nucleotide polymorphisms using the mismatch amplification mutation assay and capillary electrophoresis. Electrophoresis. 31: 3881-8. PMID 21064143 DOI: 10.1002/Elps.201000379 |
0.651 |
|
| 2010 |
Morelli G, Song Y, Mazzoni CJ, Eppinger M, Roumagnac P, Wagner DM, Feldkamp M, Kusecek B, Vogler AJ, Li Y, Cui Y, Thomson NR, Jombart T, Leblois R, Lichtner P, ... ... Keim P, et al. Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity. Nature Genetics. 42: 1140-3. PMID 21037571 DOI: 10.1038/Ng.705 |
0.729 |
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| 2010 |
Chen PE, Willner KM, Butani A, Dorsey S, George M, Stewart A, Lentz SM, Cook CE, Akmal A, Price LB, Keim PS, Mateczun A, Brahmbhatt TN, Bishop-Lilly KA, Zwick ME, et al. Rapid identification of genetic modifications in Bacillus anthracis using whole genome draft sequences generated by 454 pyrosequencing. Plos One. 5: e12397. PMID 20811637 DOI: 10.1371/Journal.Pone.0012397 |
0.316 |
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| 2010 |
Brown AN, McSharry JJ, Weng Q, Driebe EM, Engelthaler DM, Sheff K, Keim PS, Nguyen J, Drusano GL. In vitro system for modeling influenza A virus resistance under drug pressure. Antimicrobial Agents and Chemotherapy. 54: 3442-50. PMID 20498316 DOI: 10.1128/Aac.01385-09 |
0.504 |
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| 2010 |
Wagner DM, Runberg J, Vogler AJ, Lee J, Driebe E, Price LB, Engelthaler DM, Fricke WF, Ravel J, Keim P. No resistance plasmid in Yersinia pestis, North America. Emerging Infectious Diseases. 16: 885-7. PMID 20409397 DOI: 10.3201/Eid1605.090892 |
0.781 |
|
| 2010 |
Aikembayev AM, Lukhnova L, Temiraliyeva G, Meka-Mechenko T, Pazylov Y, Zakaryan S, Denissov G, Easterday WR, Van Ert MN, Keim P, Francesconi SC, Blackburn JK, Hugh-Jones M, Hadfield T. Historical distribution and molecular diversity of Bacillus anthracis, Kazakhstan. Emerging Infectious Diseases. 16: 789-96. PMID 20409368 DOI: 10.3201/Eid1605.091427 |
0.764 |
|
| 2010 |
Sheff KW, York ER, Driebe EM, Barker BM, Rounsley SD, Waddell VG, Beckstrom-Sternberg SM, Beckstrom-Sternberg JS, Keim PS, Engelthaler DM. Development of a rapid, cost-effective TaqMan Real-Time PCR Assay for identification and differentiation of Coccidioides immitis and Coccidioides posadasii. Medical Mycology. 48: 466-9. PMID 20370360 DOI: 10.3109/13693780903218990 |
0.534 |
|
| 2010 |
Nandi T, Ong C, Singh AP, Boddey J, Atkins T, Sarkar-Tyson M, Essex-Lopresti AE, Chua HH, Pearson T, Kreisberg JF, Nilsson C, Ariyaratne P, Ronning C, Losada L, Ruan Y, ... ... Keim P, et al. A genomic survey of positive selection in Burkholderia pseudomallei provides insights into the evolution of accidental virulence. Plos Pathogens. 6: e1000845. PMID 20368977 DOI: 10.1371/Journal.Ppat.1000845 |
0.638 |
|
| 2010 |
Losada L, Ronning CM, DeShazer D, Woods D, Fedorova N, Kim HS, Shabalina SA, Pearson TR, Brinkac L, Tan P, Nandi T, Crabtree J, Badger J, Beckstrom-Sternberg S, Saqib M, ... ... Keim P, et al. Continuing evolution of Burkholderia mallei through genome reduction and large-scale rearrangements. Genome Biology and Evolution. 2: 102-16. PMID 20333227 DOI: 10.1093/Gbe/Evq003 |
0.675 |
|
| 2010 |
Price EP, Hornstra HM, Limmathurotsakul D, Max TL, Sarovich DS, Vogler AJ, Dale JL, Ginther JL, Leadem B, Colman RE, Foster JT, Tuanyok A, Wagner DM, Peacock SJ, Pearson T, ... Keim P, et al. Within-host evolution of Burkholderia pseudomallei in four cases of acute melioidosis. Plos Pathogens. 6: e1000725. PMID 20090837 DOI: 10.1371/Journal.Ppat.1000725 |
0.781 |
|
| 2010 |
Foster JT, Allan GJ, Chan AP, Rabinowicz PD, Ravel J, Jackson PJ, Keim P. Single nucleotide polymorphisms for assessing genetic diversity in castor bean (Ricinus communis). Bmc Plant Biology. 10: 13. PMID 20082707 DOI: 10.1186/1471-2229-10-13 |
0.389 |
|
| 2010 |
Price LB, Liu CM, Johnson KE, Aziz M, Lau MK, Bowers J, Ravel J, Keim PS, Serwadda D, Wawer MJ, Gray RH. The effects of circumcision on the penis microbiome. Plos One. 5: e8422. PMID 20066050 DOI: 10.1371/Journal.Pone.0008422 |
0.474 |
|
| 2010 |
Liu CM, Driebe EM, Schupp J, Kelley E, Nguyen JT, McSharry JJ, Weng Q, Engelthaler DM, Keim PS. Rapid quantification of single-nucleotide mutations in mixed influenza A viral populations using allele-specific mixture analysis. Journal of Virological Methods. 163: 109-15. PMID 19761797 DOI: 10.1016/J.Jviromet.2009.09.007 |
0.675 |
|
| 2010 |
Sheff KW, Keim PS, Engelthaler DM. Reply to Dr Wiwanitkit Medical Mycology. 48: 680. DOI: 10.3109/13693780903500046 |
0.459 |
|
| 2010 |
Liu C, Cosetti M, Price L, Keim P, Lalwani A. Pyrosequencing-Based Analysis of the Middle Ear Microbiota Otolaryngology–Head and Neck Surgery. 143: P102-P102. DOI: 10.1016/J.Otohns.2010.06.177 |
0.529 |
|
| 2010 |
Kenefic LJ, Okinaka RT, Keim P. Population Genetics of Bacillus: Phylogeography of Anthrax in North America Bacterial Population Genetics in Infectious Disease. 167-180. DOI: 10.1002/9780470600122.ch9 |
0.725 |
|
| 2009 |
Hornstra H, Pearson T, Georgia S, Liguori A, Dale J, Price E, O'Neill M, Deshazer D, Muhammad G, Saqib M, Naureen A, Keim P. Molecular epidemiology of glanders, Pakistan. Emerging Infectious Diseases. 15: 2036-9. PMID 19961695 DOI: 10.3201/Eid1512.090738 |
0.676 |
|
| 2009 |
Pearson T, Giffard P, Beckstrom-Sternberg S, Auerbach R, Hornstra H, Tuanyok A, Price EP, Glass MB, Leadem B, Beckstrom-Sternberg JS, Allan GJ, Foster JT, Wagner DM, Okinaka RT, Sim SH, ... ... Keim P, et al. Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer. Bmc Biology. 7: 78. PMID 19922616 DOI: 10.1186/1741-7007-7-78 |
0.679 |
|
| 2009 |
Birdsell DN, Stewart T, Vogler AJ, Lawaczeck E, Diggs A, Sylvester TL, Buchhagen JL, Auerbach RK, Keim P, Wagner DM. Francisella tularensis subsp. novicida isolated from a human in Arizona. Bmc Research Notes. 2: 223. PMID 19895698 DOI: 10.1186/1756-0500-2-223 |
0.712 |
|
| 2009 |
Colman RE, Vogler AJ, Lowell JL, Gage KL, Morway C, Reynolds PJ, Ettestad P, Keim P, Kosoy MY, Wagner DM. Fine-scale identification of the most likely source of a human plague infection. Emerging Infectious Diseases. 15: 1623-5. PMID 19861057 DOI: 10.3201/Eid1510.090188 |
0.671 |
|
| 2009 |
Keim P, Gruendike JM, Klevytska AM, Schupp JM, Challacombe J, Okinaka R. The genome and variation of Bacillus anthracis. Molecular Aspects of Medicine. 30: 397-405. PMID 19729033 DOI: 10.1016/J.Mam.2009.08.005 |
0.424 |
|
| 2009 |
Price LB, Liu CM, Melendez JH, Frankel YM, Engelthaler D, Aziz M, Bowers J, Rattray R, Ravel J, Kingsley C, Keim PS, Lazarus GS, Zenilman JM. Community analysis of chronic wound bacteria using 16S rRNA gene-based pyrosequencing: impact of diabetes and antibiotics on chronic wound microbiota. Plos One. 4: e6462. PMID 19649281 DOI: 10.1371/Journal.Pone.0006462 |
0.645 |
|
| 2009 |
Nguyen JT, Hoopes JD, Smee DF, Prichard MN, Driebe EM, Engelthaler DM, Le MH, Keim PS, Spence RP, Went GT. Triple combination of oseltamivir, amantadine, and ribavirin displays synergistic activity against multiple influenza virus strains in vitro. Antimicrobial Agents and Chemotherapy. 53: 4115-26. PMID 19620324 DOI: 10.1128/Aac.00476-09 |
0.502 |
|
| 2009 |
Larsson P, Elfsmark D, Svensson K, Wikström P, Forsman M, Brettin T, Keim P, Johansson A. Molecular evolutionary consequences of niche restriction in Francisella tularensis, a facultative intracellular pathogen. Plos Pathogens. 5: e1000472. PMID 19521508 DOI: 10.1371/Journal.Ppat.1000472 |
0.329 |
|
| 2009 |
Champion MD, Zeng Q, Nix EB, Nano FE, Keim P, Kodira CD, Borowsky M, Young S, Koehrsen M, Engels R, Pearson M, Howarth C, Larson L, White J, Alvarado L, et al. Comparative genomic characterization of Francisella tularensis strains belonging to low and high virulence subspecies. Plos Pathogens. 5: e1000459. PMID 19478886 DOI: 10.1371/Journal.Ppat.1000459 |
0.333 |
|
| 2009 |
Pearson T, Okinaka RT, Foster JT, Keim P. Phylogenetic understanding of clonal populations in an era of whole genome sequencing. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 9: 1010-9. PMID 19477301 DOI: 10.1016/J.Meegid.2009.05.014 |
0.67 |
|
| 2009 |
Tiller RV, De BK, Boshra M, Huynh LY, Van Ert MN, Wagner DM, Klena J, Mohsen TS, El-Shafie SS, Keim P, Hoffmaster AR, Wilkins PP, Pimentel G. Comparison of two multiple-locus variable-number tandem-repeat analysis methods for molecular strain typing of human Brucella melitensis isolates from the Middle East. Journal of Clinical Microbiology. 47: 2226-31. PMID 19439543 DOI: 10.1128/Jcm.02362-08 |
0.776 |
|
| 2009 |
Simonson TS, Okinaka RT, Wang B, Easterday WR, Huynh L, U'Ren JM, Dukerich M, Zanecki SR, Kenefic LJ, Beaudry J, Schupp JM, Pearson T, Wagner DM, Hoffmaster A, Ravel J, ... Keim P, et al. Bacillus anthracis in China and its relationship to worldwide lineages. Bmc Microbiology. 9: 71. PMID 19368722 DOI: 10.1186/1471-2180-9-71 |
0.819 |
|
| 2009 |
Kenefic LJ, Pearson T, Okinaka RT, Schupp JM, Wagner DM, Hoffmaster AR, Trim CB, Trim CP, Chung WK, Beaudry JA, Jiang L, Gajer P, Foster JT, Mead JI, Ravel J, ... Keim P, et al. Pre-Columbian origins for North American anthrax. Plos One. 4: e4813. PMID 19283072 DOI: 10.1371/Journal.Pone.0004813 |
0.813 |
|
| 2009 |
Vogler AJ, Birdsell D, Price LB, Bowers JR, Beckstrom-Sternberg SM, Auerbach RK, Beckstrom-Sternberg JS, Johansson A, Clare A, Buchhagen JL, Petersen JM, Pearson T, Vaissaire J, Dempsey MP, Foxall P, ... ... Keim P, et al. Phylogeography of Francisella tularensis: global expansion of a highly fit clone. Journal of Bacteriology. 191: 2474-84. PMID 19251856 DOI: 10.1128/Jb.01786-08 |
0.83 |
|
| 2009 |
Foster JT, Beckstrom-Sternberg SM, Pearson T, Beckstrom-Sternberg JS, Chain PS, Roberto FF, Hnath J, Brettin T, Keim P. Whole-genome-based phylogeny and divergence of the genus Brucella. Journal of Bacteriology. 191: 2864-70. PMID 19201792 DOI: 10.1128/Jb.01581-08 |
0.685 |
|
| 2009 |
Currie BJ, Haslem A, Pearson T, Hornstra H, Leadem B, Mayo M, Gal D, Ward L, Godoy D, Spratt BG, Keim P. Identification of melioidosis outbreak by multilocus variable number tandem repeat analysis. Emerging Infectious Diseases. 15: 169-74. PMID 19193259 DOI: 10.3201/Eid1502.081036 |
0.696 |
|
| 2009 |
Vogler AJ, Birdsell D, Wagner DM, Keim P. An optimized, multiplexed multi-locus variable-number tandem repeat analysis system for genotyping Francisella tularensis. Letters in Applied Microbiology. 48: 140-4. PMID 19018964 DOI: 10.1111/J.1472-765X.2008.02484.X |
0.667 |
|
| 2009 |
Ravel J, Jiang L, Stanley ST, Wilson MR, Decker RS, Read TD, Worsham P, Keim PS, Salzberg SL, Fraser-Liggett CM, Rasko DA. The complete genome sequence of Bacillus anthracis Ames "Ancestor". Journal of Bacteriology. 191: 445-6. PMID 18952800 DOI: 10.1128/Jb.01347-08 |
0.312 |
|
| 2009 |
Kenefic LJ, Pearson T, Okinaka RT, Schupp JM, Wagner DM, Hoffmaster AR, Trim CB, Chung W, Beaudry JA, Jiang L, Gajer P, Foster JT, Mead JI, Ravel J, Keim P. Correction: Pre-Columbian Origins for North American Anthrax Plos One. 4. DOI: 10.1371/Annotation/9E8Af820-8037-4F98-86B3-6581E16C2Ae6 |
0.786 |
|
| 2009 |
Cummings CA, Bormann Chung CA, Fang R, Barker M, Brzoska PM, Williamson P, Beaudry JA, Matthews M, Schupp JM, Wagner DM, Furtado MR, Keim P, Budowle B. Whole-genome typing of Bacillus anthracis isolates by next-generation sequencing accurately and rapidly identifies strain-specific diagnostic polymorphisms Forensic Science International: Genetics Supplement Series. 2: 300-301. DOI: 10.1016/J.Fsigss.2009.08.097 |
0.479 |
|
| 2009 |
Busch JD, Benford R, Pearson T, Palmer E, Balda RP, Keim P. Development of polymorphic tetranucleotide microsatellites for pinyon jays (Gymnorhinus cyanocephalus) Conservation Genetics. 10: 689-691. DOI: 10.1007/S10592-008-9616-Z |
0.627 |
|
| 2008 |
Tuanyok A, Leadem BR, Auerbach RK, Beckstrom-Sternberg SM, Beckstrom-Sternberg JS, Mayo M, Wuthiekanun V, Brettin TS, Nierman WC, Peacock SJ, Currie BJ, Wagner DM, Keim P. Genomic islands from five strains of Burkholderia pseudomallei. Bmc Genomics. 9: 566. PMID 19038032 DOI: 10.1186/1471-2164-9-566 |
0.444 |
|
| 2008 |
Kenefic LJ, Pearson T, Okinaka RT, Chung WK, Max T, Trim CP, Beaudry JA, Schupp JM, Van Ert MN, Marston CK, Gutierrez K, Swinford AK, Hoffmaster AR, Keim P. Texas isolates closely related to Bacillus anthracis Ames. Emerging Infectious Diseases. 14: 1494-6. PMID 18760033 DOI: 10.3201/Eid1409.080076 |
0.827 |
|
| 2008 |
Keim P, Pearson T, Okinaka R. Microbial forensics: DNA fingerprinting of Bacillus anthracis (anthrax). Analytical Chemistry. 80: 4791-9. PMID 18609763 DOI: 10.1021/Ac086131G |
0.569 |
|
| 2008 |
Okinaka RT, Henrie M, Hill KK, Lowery KS, Van Ert M, Pearson T, Schupp J, Kenefic L, Beaudry J, Hofstadler SA, Jackson PJ, Keim P. Single nucleotide polymorphism typing of Bacillus anthracis from Sverdlovsk tissue. Emerging Infectious Diseases. 14: 653-6. PMID 18394287 DOI: 10.3201/Eid1404.070984 |
0.803 |
|
| 2008 |
Kenefic LJ, Beaudry J, Trim C, Daly R, Parmar R, Zanecki S, Huynh L, Van Ert MN, Wagner DM, Graham T, Keim P. High resolution genotyping of Bacillus anthracis outbreak strains using four highly mutable single nucleotide repeat markers. Letters in Applied Microbiology. 46: 600-3. PMID 18363651 DOI: 10.1111/J.1472-765X.2008.02353.X |
0.836 |
|
| 2008 |
Vogler AJ, Driebe EM, Lee J, Auerbach RK, Allender CJ, Stanley M, Kubota K, Andersen GL, Radnedge L, Worsham PL, Keim P, Wagner DM. Assays for the rapid and specific identification of North American Yersinia pestis and the common laboratory strain CO92. Biotechniques. 44: 201, 203-4, 207. PMID 18330347 DOI: 10.2144/000112815 |
0.691 |
|
| 2008 |
Kenefic LJ, Beaudry J, Trim C, Huynh L, Zanecki S, Matthews M, Schupp J, Van Ert M, Keim P. A high resolution four-locus multiplex single nucleotide repeat (SNR) genotyping system in Bacillus anthracis. Journal of Microbiological Methods. 73: 269-72. PMID 18237793 DOI: 10.1016/J.Mimet.2007.11.014 |
0.78 |
|
| 2008 |
Foster JT, Okinaka RT, Svensson R, Shaw K, De BK, Robison RA, Probert WS, Kenefic LJ, Brown WD, Keim P. Real-time PCR assays of single-nucleotide polymorphisms defining the major Brucella clades. Journal of Clinical Microbiology. 46: 296-301. PMID 18032628 DOI: 10.1128/Jcm.01496-07 |
0.789 |
|
| 2008 |
Woolbright SA, Difazio SP, Yin T, Martinsen GD, Zhang X, Allan GJ, Whitham TG, Keim P. A dense linkage map of hybrid cottonwood (Populus fremontii x P. angustifolia) contributes to long-term ecological research and comparison mapping in a model forest tree. Heredity. 100: 59-70. PMID 17895905 DOI: 10.1038/Sj.Hdy.6801063 |
0.353 |
|
| 2008 |
Foster JT, Okinaka RT, Svensson R, Shaw K, De Barun K, Robison RA, Probert WS, Kenefic LJ, Brown WD, Keim P. Real-time PCR assays of single-nucleotide polymorphisms defining the major Brucella clades (Journal of Clinical Microbiology (2008) 46, 1, (296-301)) Journal of Clinical Microbiology. 46: 2474. DOI: 10.1128/Jcm.00909-08 |
0.754 |
|
| 2008 |
Allan G, Williams A, Rabinowicz PD, Chan AP, Ravel J, Keim P. Worldwide genotyping of castor bean germplasm (Ricinus communis L.) using AFLPs and SSRs Genetic Resources and Crop Evolution. 55: 365-378. DOI: 10.1007/S10722-007-9244-3 |
0.386 |
|
| 2007 |
Tuanyok A, Auerbach RK, Brettin TS, Bruce DC, Munk AC, Detter JC, Pearson T, Hornstra H, Sermswan RW, Wuthiekanun V, Peacock SJ, Currie BJ, Keim P, Wagner DM. A horizontal gene transfer event defines two distinct groups within Burkholderia pseudomallei that have dissimilar geographic distributions. Journal of Bacteriology. 189: 9044-9. PMID 17933898 DOI: 10.1128/Jb.01264-07 |
0.636 |
|
| 2007 |
Dempsey MP, Dobson M, Zhang C, Zhang M, Lion C, Gutiérrez-Martín CB, Iwen PC, Fey PD, Olson ME, Niemeyer D, Francesconi S, Crawford R, Stanley M, Rhodes J, Wagner DM, ... ... Keim P, et al. Genomic deletion marking an emerging subclone of Francisella tularensis subsp. holarctica in France and the Iberian Peninsula. Applied and Environmental Microbiology. 73: 7465-70. PMID 17890329 DOI: 10.1128/Aem.00646-07 |
0.718 |
|
| 2007 |
U'ren JM, Hornstra H, Pearson T, Schupp JM, Leadem B, Georgia S, Sermswan RW, Keim P. Fine-scale genetic diversity among Burkholderia pseudomallei soil isolates in northeast Thailand. Applied and Environmental Microbiology. 73: 6678-81. PMID 17720819 DOI: 10.1128/Aem.00986-07 |
0.667 |
|
| 2007 |
Auerbach RK, Tuanyok A, Probert WS, Kenefic L, Vogler AJ, Bruce DC, Munk C, Brettin TS, Eppinger M, Ravel J, Wagner DM, Keim P. Yersinia pestis evolution on a small timescale: comparison of whole genome sequences from North America. Plos One. 2: e770. PMID 17712418 DOI: 10.1371/Journal.Pone.0000770 |
0.825 |
|
| 2007 |
Lee K, Costerton JW, Ravel J, Auerbach RK, Wagner DM, Keim P, Leid JG. Phenotypic and functional characterization of Bacillus anthracis biofilms. Microbiology (Reading, England). 153: 1693-701. PMID 17526827 DOI: 10.1099/Mic.0.2006/003376-0 |
0.349 |
|
| 2007 |
Van Ert MN, Easterday WR, Huynh LY, Okinaka RT, Hugh-Jones ME, Ravel J, Zanecki SR, Pearson T, Simonson TS, U'Ren JM, Kachur SM, Leadem-Dougherty RR, Rhoton SD, Zinser G, Farlow J, ... Keim P, et al. Global genetic population structure of Bacillus anthracis. Plos One. 2: e461. PMID 17520020 DOI: 10.1371/Journal.Pone.0000461 |
0.832 |
|
| 2007 |
Keim P, Johansson A, Wagner DM. Molecular epidemiology, evolution, and ecology of Francisella. Annals of the New York Academy of Sciences. 1105: 30-66. PMID 17435120 DOI: 10.1196/Annals.1409.011 |
0.38 |
|
| 2007 |
U'Ren JM, Schupp JM, Pearson T, Hornstra H, Friedman CL, Smith KL, Daugherty RR, Rhoton SD, Leadem B, Georgia S, Cardon M, Huynh LY, DeShazer D, Harvey SP, Robison R, ... ... Keim P, et al. Tandem repeat regions within the Burkholderia pseudomallei genome and their application for high resolution genotyping. Bmc Microbiology. 7: 23. PMID 17397553 DOI: 10.1186/1471-2180-7-23 |
0.699 |
|
| 2007 |
Touchman JW, Wagner DM, Hao J, Mastrian SD, Shah MK, Vogler AJ, Allender CJ, Clark EA, Benitez DS, Youngkin DJ, Girard JM, Auerbach RK, Beckstrom-Sternberg SM, Keim P. A North American Yersinia pestis draft genome sequence: SNPs and phylogenetic analysis. Plos One. 2: e220. PMID 17311096 DOI: 10.1371/Journal.Pone.0000220 |
0.734 |
|
| 2007 |
Pearson T, U'Ren JM, Schupp JM, Allan GJ, Foster PG, Mayo MJ, Gal D, Choy JL, Daugherty RL, Kachur S, Friedman CL, Leadem B, Georgia S, Hornstra H, Vogler AJ, ... ... Keim P, et al. VNTR analysis of selected outbreaks of Burkholderia pseudomallei in Australia. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 7: 416-23. PMID 17258514 DOI: 10.1016/J.Meegid.2006.12.002 |
0.797 |
|
| 2007 |
Vogler AJ, Keys CE, Allender C, Bailey I, Girard J, Pearson T, Smith KL, Wagner DM, Keim P. Mutations, mutation rates, and evolution at the hypervariable VNTR loci of Yersinia pestis. Mutation Research. 616: 145-58. PMID 17161849 DOI: 10.1016/J.Mrfmmm.2006.11.007 |
0.749 |
|
| 2007 |
Van Ert MN, Easterday WR, Simonson TS, U'Ren JM, Pearson T, Kenefic LJ, Busch JD, Huynh LY, Dukerich M, Trim CB, Beaudry J, Welty-Bernard A, Read T, Fraser CM, Ravel J, ... Keim P, et al. Strain-specific single-nucleotide polymorphism assays for the Bacillus anthracis Ames strain. Journal of Clinical Microbiology. 45: 47-53. PMID 17093023 DOI: 10.1128/Jcm.01233-06 |
0.828 |
|
| 2006 |
Okinaka R, Pearson T, Keim P. Anthrax, but not Bacillus anthracis? Plos Pathogens. 2: e122. PMID 17121463 DOI: 10.1371/journal.ppat.0020122 |
0.562 |
|
| 2006 |
Bangert RK, Allan GJ, Turek RJ, Wimp GM, Meneses N, Martinsen GD, Keim P, Whitham TG. From genes to geography: a genetic similarity rule for arthropod community structure at multiple geographic scales. Molecular Ecology. 15: 4215-28. PMID 17054514 DOI: 10.1111/J.1365-294X.2006.03092.X |
0.309 |
|
| 2006 |
Maho A, Rossano A, Hächler H, Holzer A, Schelling E, Zinsstag J, Hassane MH, Toguebaye BS, Akakpo AJ, Van Ert M, Keim P, Kenefic L, Frey J, Perreten V. Antibiotic susceptibility and molecular diversity of Bacillus anthracis strains in Chad: detection of a new phylogenetic subgroup. Journal of Clinical Microbiology. 44: 3422-5. PMID 16954291 DOI: 10.1128/Jcm.01269-06 |
0.827 |
|
| 2006 |
Vogler AJ, Keys C, Nemoto Y, Colman RE, Jay Z, Keim P. Effect of repeat copy number on variable-number tandem repeat mutations in Escherichia coli O157:H7. Journal of Bacteriology. 188: 4253-63. PMID 16740932 DOI: 10.1128/Jb.00001-06 |
0.666 |
|
| 2006 |
Han CS, Xie G, Challacombe JF, Altherr MR, Bhotika SS, Brown N, Bruce D, Campbell CS, Campbell ML, Chen J, Chertkov O, Cleland C, Dimitrijevic M, Doggett NA, Fawcett JJ, ... ... Keim P, et al. Pathogenomic sequence analysis of Bacillus cereus and Bacillus thuringiensis isolates closely related to Bacillus anthracis. Journal of Bacteriology. 188: 3382-90. PMID 16621833 DOI: 10.1128/Jb.188.9.3382-3390.2006 |
0.413 |
|
| 2006 |
Pearson T, Whitfield MJ, Theimer TC, Keim P. POLYGYNY AND EXTRA-PAIR PATERNITY IN A POPULATION OF SOUTHWESTERN WILLOW FLYCATCHERS The Condor. 108: 571. DOI: 10.1650/0010-5422(2006)108[571:PAEPIA]2.0.CO;2 |
0.529 |
|
| 2006 |
Han CS, Xie G, Challacombe JF, Altherr MR, Bhotika SS, Brown N, Bruce D, Campbell CS, Campbell ML, Chen J, Chertkov O, Cleland C, Dimitrijevic M, Doggett NA, Fawcett JJ, ... ... Keim P, et al. Erratum: Pathogenomic sequence analysis of Bacillus cereus and Bacillus thuringiensis isolates closely related to Bacillus anthracis (Journal of Bacteriology (2006) 188, 9 (3382-3390)) Journal of Bacteriology. 188. DOI: 10.1128/Jb.01430-06 |
0.377 |
|
| 2006 |
Wagner DM, Drickamer LC, Krpata DM, Allender CJ, Van Pelt WE, Keim P. Persistence of Gunnison's prairie dog colonies in Arizona, USA Biological Conservation. 130: 331-339. DOI: 10.1016/J.Biocon.2005.12.028 |
0.318 |
|
| 2005 |
Farlow J, Wagner DM, Dukerich M, Stanley M, Chu M, Kubota K, Petersen J, Keim P. Francisella tularensis in the United States. Emerging Infectious Diseases. 11: 1835-41. PMID 16485467 DOI: 10.3201/Eid1112.050728 |
0.768 |
|
| 2005 |
U'Ren JM, Van Ert MN, Schupp JM, Easterday WR, Simonson TS, Okinaka RT, Pearson T, Keim P. Use of a real-time PCR TaqMan assay for rapid identification and differentiation of Burkholderia pseudomallei and Burkholderia mallei. Journal of Clinical Microbiology. 43: 5771-4. PMID 16272516 DOI: 10.1128/Jcm.43.11.5771-5774.2005 |
0.811 |
|
| 2005 |
Fasanella A, Van Ert M, Altamura SA, Garofolo G, Buonavoglia C, Leori G, Huynh L, Zanecki S, Keim P. Molecular diversity of Bacillus anthracis in Italy. Journal of Clinical Microbiology. 43: 3398-401. PMID 16000465 DOI: 10.1128/Jcm.43.7.3398-3401.2005 |
0.778 |
|
| 2005 |
Easterday WR, Van Ert MN, Zanecki S, Keim P. Specific detection of bacillus anthracis using a TaqMan mismatch amplification mutation assay. Biotechniques. 38: 731-5. PMID 15945372 DOI: 10.2144/05385St03 |
0.754 |
|
| 2005 |
McRae BH, Beier P, Dewald LE, Huynh LY, Keim P. Habitat barriers limit gene flow and illuminate historical events in a wide-ranging carnivore, the American puma. Molecular Ecology. 14: 1965-77. PMID 15910319 DOI: 10.1111/J.1365-294X.2005.02571.X |
0.351 |
|
| 2005 |
Easterday WR, Van Ert MN, Simonson TS, Wagner DM, Kenefic LJ, Allender CJ, Keim P. Use of single nucleotide polymorphisms in the plcR gene for specific identification of Bacillus anthracis. Journal of Clinical Microbiology. 43: 1995-7. PMID 15815042 DOI: 10.1128/Jcm.43.4.1995-1997.2005 |
0.814 |
|
| 2005 |
Cheung DT, Kam KM, Hau KL, Au TK, Marston CK, Gee JE, Popovic T, Van Ert MN, Kenefic L, Keim P, Hoffmaster AR. Characterization of a Bacillus anthracis isolate causing a rare case of fatal anthrax in a 2-year-old boy from Hong Kong. Journal of Clinical Microbiology. 43: 1992-4. PMID 15815041 DOI: 10.1128/Jcm.43.4.1992-1994.2005 |
0.823 |
|
| 2005 |
Keys C, Kemper S, Keim P. Highly diverse variable number tandem repeat loci in the E. coli O157:H7 and O55:H7 genomes for high-resolution molecular typing. Journal of Applied Microbiology. 98: 928-40. PMID 15752340 DOI: 10.1111/J.1365-2672.2004.02532.X |
0.323 |
|
| 2005 |
Lowell JL, Wagner DM, Atshabar B, Antolin MF, Vogler AJ, Keim P, Chu MC, Gage KL. Identifying sources of human exposure to plague. Journal of Clinical Microbiology. 43: 650-6. PMID 15695659 DOI: 10.1128/Jcm.43.2.650-656.2005 |
0.707 |
|
| 2005 |
Lowell JL, Wagner DM, Atshabar B, Antolin MF, Vogler AJ, Keim P, Chu MC, Gage KL. Erratum: Identifying sources of human exposure to plague (Journal of Clinical Microbiology (2005) 43:2 (650-656)) Journal of Clinical Microbiology. 43. DOI: 10.1128/Jcm.43.4.2040.2005 |
0.647 |
|
| 2005 |
Busch JD, Katzner TE, Bragin E, Keim P. Tetranucleotide microsatellites for aquila and haliaeetus eagles Molecular Ecology Notes. 5: 39-41. DOI: 10.1111/J.1471-8286.2004.00823.X |
0.401 |
|
| 2005 |
Shuster SM, Miller MP, Lang BK, Zorich N, Huynh L, Keim P. The effects of controlled propagation on an endangered species: Genetic differentiation and divergence in body size among native and captive populations of the Socorro Isopod (Crustacea: Flabellifera) Conservation Genetics. 6: 355-368. DOI: 10.1007/S10592-005-5003-1 |
0.301 |
|
| 2004 |
Achtman M, Morelli G, Zhu P, Wirth T, Diehl I, Kusecek B, Vogler AJ, Wagner DM, Allender CJ, Easterday WR, Chenal-Francisque V, Worsham P, Thomson NR, Parkhill J, Lindler LE, ... ... Keim P, et al. Microevolution and history of the plague bacillus, Yersinia pestis. Proceedings of the National Academy of Sciences of the United States of America. 101: 17837-42. PMID 15598742 DOI: 10.1073/Pnas.0408026101 |
0.7 |
|
| 2004 |
Allender CJ, Easterday WR, Van Ert MN, Wagner DM, Keim P. High-throughput extraction of arthropod vector and pathogen DNA using bead milling. Biotechniques. 37: 730, 732, 734. PMID 15560126 DOI: 10.2144/04375Bm03 |
0.714 |
|
| 2004 |
Van Ert MN, Hofstadler SA, Jiang Y, Busch JD, Wagner DM, Drader JJ, Ecker DJ, Hannis JC, Huynh LY, Schupp JM, Simonson TS, Keim P. Mass spectrometry provides accurate characterization of two genetic marker types in Bacillus anthracis. Biotechniques. 37: 642-4, 646, 648 pass. PMID 15517976 DOI: 10.2144/04374Rr01 |
0.749 |
|
| 2004 |
DeWoody JA, Schupp J, Kenefic L, Busch J, Murfitt L, Keim P. Universal method for producing ROX-labeled size standards suitable for automated genotyping. Biotechniques. 37: 348, 350, 352. PMID 15470886 DOI: 10.2144/04373Bm02 |
0.696 |
|
| 2004 |
Forbes SN, Valenzuela RK, Keim P, Service PM. Quantitative trait loci affecting life span in replicated populations of Drosophila melanogaster. I. Composite interval mapping. Genetics. 168: 301-11. PMID 15454544 DOI: 10.1534/Genetics.103.023218 |
0.308 |
|
| 2004 |
Keim P, Van Ert MN, Pearson T, Vogler AJ, Huynh LY, Wagner DM. Anthrax molecular epidemiology and forensics: using the appropriate marker for different evolutionary scales. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 4: 205-13. PMID 15450200 DOI: 10.1016/J.Meegid.2004.02.005 |
0.834 |
|
| 2004 |
Pearson T, Busch JD, Ravel J, Read TD, Rhoton SD, U'Ren JM, Simonson TS, Kachur SM, Leadem RR, Cardon ML, Van Ert MN, Huynh LY, Fraser CM, Keim P. Phylogenetic discovery bias in Bacillus anthracis using single-nucleotide polymorphisms from whole-genome sequencing. Proceedings of the National Academy of Sciences of the United States of America. 101: 13536-41. PMID 15347815 DOI: 10.1073/Pnas.0403844101 |
0.829 |
|
| 2004 |
Johansson A, Farlow J, Larsson P, Dukerich M, Chambers E, Byström M, Fox J, Chu M, Forsman M, Sjöstedt A, Keim P. Worldwide genetic relationships among Francisella tularensis isolates determined by multiple-locus variable-number tandem repeat analysis Journal of Bacteriology. 186: 5808-5818. PMID 15317786 DOI: 10.1128/Jb.186.17.5808-5818.2004 |
0.787 |
|
| 2004 |
Girard JM, Wagner DM, Vogler AJ, Keys C, Allender CJ, Drickamer LC, Keim P. Differential plague-transmission dynamics determine Yersinia pestis population genetic structure on local, regional, and global scales. Proceedings of the National Academy of Sciences of the United States of America. 101: 8408-13. PMID 15173603 DOI: 10.1073/Pnas.0401561101 |
0.7 |
|
| 2004 |
Fischer DG, Hart SC, Whitham TG, Martinsen GD, Keim P. Ecosystem implications of genetic variation in water-use of a dominant riparian tree. Oecologia. 139: 288-97. PMID 14767756 DOI: 10.1007/S00442-004-1505-7 |
0.302 |
|
| 2004 |
Hill KK, Ticknor LO, Okinaka RT, Asay M, Blair H, Bliss KA, Laker M, Pardington PE, Richardson AP, Tonks M, Beecher DJ, Kemp JD, Kolstø AB, Wong AC, Keim P, et al. Fluorescent amplified fragment length polymorphism analysis of Bacillus anthracis, Bacillus cereus, and Bacillus thuringiensis isolates. Applied and Environmental Microbiology. 70: 1068-80. PMID 14766590 DOI: 10.1128/Aem.70.2.1068-1080.2004 |
0.303 |
|
| 2004 |
Wimp GM, Young WP, Woolbright SA, Martinsen GD, Keim P, Whitham TG. Conserving plant genetic diversity for dependent animal communities Ecology Letters. 7: 776-780. DOI: 10.1111/J.1461-0248.2004.00635.X |
0.319 |
|
| 2003 |
Spurgiesz RS, Quitugua TN, Smith KL, Schupp J, Palmer EG, Cox RA, Keim P. Molecular typing of Mycobacterium tuberculosis by using nine novel variable-number tandem repeats across the Beijing family and low-copy-number IS6110 isolates. Journal of Clinical Microbiology. 41: 4224-30. PMID 12958249 DOI: 10.1128/Jcm.41.9.4224-4230.2003 |
0.406 |
|
| 2003 |
Price LB, Vogler A, Pearson T, Busch JD, Schupp JM, Keim P. In vitro selection and characterization of Bacillus anthracis mutants with high-level resistance to ciprofloxacin. Antimicrobial Agents and Chemotherapy. 47: 2362-5. PMID 12821500 DOI: 10.1128/Aac.47.7.2362-2365.2003 |
0.742 |
|
| 2003 |
Radnedge L, Agron PG, Hill KK, Jackson PJ, Ticknor LO, Keim P, Andersen GL. Genome differences that distinguish Bacillus anthracis from Bacillus cereus and Bacillus thuringiensis. Applied and Environmental Microbiology. 69: 2755-64. PMID 12732546 DOI: 10.1128/Aem.69.5.2755-2764.2003 |
0.44 |
|
| 2002 |
Fouet A, Smith KL, Keys C, Vaissaire J, Le Doujet C, Lévy M, Mock M, Keim P. Diversity among French Bacillus anthracis isolates. Journal of Clinical Microbiology. 40: 4732-4. PMID 12454180 DOI: 10.1128/JCM.40.12.4732-4734.2002 |
0.369 |
|
| 2002 |
Farlow J, Postic D, Smith KL, Jay Z, Baranton G, Keim P. Strain typing of Borrelia burgdorferi, Borrelia afzelii, and Borrelia garinii by using multiple-locus variable-number tandem repeat analysis. Journal of Clinical Microbiology. 40: 4612-8. PMID 12454161 DOI: 10.1128/Jcm.40.12.4612-4618.2002 |
0.812 |
|
| 2002 |
Keim P, Smith KL. Bacillus anthracis evolution and epidemiology. Current Topics in Microbiology and Immunology. 271: 21-32. PMID 12224522 DOI: 10.1007/978-3-662-05767-4_2 |
0.44 |
|
| 2002 |
Lindstedt SL, Reich TE, Keim P, LaStayo PC. Do muscles function as adaptable locomotor springs? The Journal of Experimental Biology. 205: 2211-6. PMID 12110655 |
0.721 |
|
| 2002 |
Read TD, Salzberg SL, Pop M, Shumway M, Umayam L, Jiang L, Holtzapple E, Busch JD, Smith KL, Schupp JM, Solomon D, Keim P, Fraser CM. Comparative genome sequencing for discovery of novel polymorphisms in Bacillus anthracis. Science (New York, N.Y.). 296: 2028-33. PMID 12004073 DOI: 10.1126/Science.1071837 |
0.443 |
|
| 2002 |
Mock KE, Theimer TC, Rhodes OE, Greenberg DL, Keim P. Genetic variation across the historical range of the wild turkey (Meleagris gallopavo). Molecular Ecology. 11: 643-57. PMID 11972754 DOI: 10.1046/J.1365-294X.2002.01467.X |
0.668 |
|
| 2002 |
Shoemaker R, Keim P, Vodkin L, Retzel E, Clifton SW, Waterston R, Smoller D, Coryell V, Khanna A, Erpelding J, Gai X, Brendel V, Raph-Schmidt C, Shoop EG, Vielweber CJ, et al. A compilation of soybean ESTs: Generation and analysis Genome. 45: 329-338. PMID 11962630 DOI: 10.1139/G01-150 |
0.335 |
|
| 2002 |
Vogler AJ, Busch JD, Percy-Fine S, Tipton-Hunton C, Smith KL, Keim P. Molecular analysis of rifampin resistance in Bacillus anthracis and Bacillus cereus. Antimicrobial Agents and Chemotherapy. 46: 511-3. PMID 11796364 DOI: 10.1128/Aac.46.2.511-513.2002 |
0.645 |
|
| 2002 |
Paxton EH, Sogge MK, McCarthey TD, Keim P. Nestling sex ratio in the Southwestern Willow Flycatcher Condor. 104: 877-881. DOI: 10.1650/0010-5422(2002)104[0877:Nsrits]2.0.Co;2 |
0.659 |
|
| 2002 |
Miller MP, Blinn DW, Keim P. Correlations between observed dispersal capabilities and patterns of genetic differentiation in populations of four aquatic insect species from the Arizona White Mountains, U.S.A Freshwater Biology. 47: 1660-1673. DOI: 10.1046/J.1365-2427.2002.00911.X |
0.361 |
|
| 2001 |
Keim P, Smith KL, Keys C, Takahashi H, Kurata T, Kaufmann A. Molecular investigation of the Aum Shinrikyo anthrax release in Kameido, Japan. Journal of Clinical Microbiology. 39: 4566-7. PMID 11724885 DOI: 10.1128/Jcm.39.12.4566-4567.2001 |
0.356 |
|
| 2001 |
Ticknor LO, Kolstø AB, Hill KK, Keim P, Laker MT, Tonks M, Jackson PJ. Fluorescent Amplified Fragment Length Polymorphism Analysis of Norwegian Bacillus cereus and Bacillus thuringiensis Soil Isolates. Applied and Environmental Microbiology. 67: 4863-73. PMID 11571195 DOI: 10.1128/AEM.67.10.4863-4873.2001 |
0.35 |
|
| 2001 |
Farlow J, Smith KL, Wong J, Abrams M, Lytle M, Keim P. Francisella tularensis strain typing using multiple-locus, variable-number tandem repeat analysis. Journal of Clinical Microbiology. 39: 3186-92. PMID 11526148 DOI: 10.1128/Jcm.39.9.3186-3192.2001 |
0.821 |
|
| 2001 |
Klevytska AM, Price LB, Schupp JM, Worsham PL, Wong J, Keim P. Identification and characterization of variable-number tandem repeats in the Yersinia pestis genome. Journal of Clinical Microbiology. 39: 3179-85. PMID 11526147 DOI: 10.1128/Jcm.39.9.3179-3185.2001 |
0.475 |
|
| 2001 |
Martinsen GD, Whitham TG, Turek RJ, Keim P. Hybrid populations selectively filter gene introgression between species. Evolution; International Journal of Organic Evolution. 55: 1325-35. PMID 11525457 DOI: 10.1111/J.0014-3820.2001.Tb00655.X |
0.356 |
|
| 2001 |
Young WP, Ostberg CO, Keim P, Thorgaard GH. Genetic characterization of hybridization and introgression between anadromous rainbow trout (oncorhynchus mykiss irideus) and coastal cutthroat trout (o. clarki clarki) Molecular Ecology. 10: 921-930. PMID 11348501 DOI: 10.1046/J.1365-294X.2001.01247.X |
0.334 |
|
| 2001 |
Mock KE, Theimer TC, Wakeling BF, Rhodes OE, Greenberg DL, Keim P. Verifying the Origins of a Reintroduced Population of Gould's Wild Turkey The Journal of Wildlife Management. 65: 871. DOI: 10.2307/3803036 |
0.63 |
|
| 2000 |
Smith KL, DeVos V, Bryden H, Price LB, Hugh-Jones ME, Keim P. Bacillus anthracis diversity in Kruger National Park. Journal of Clinical Microbiology. 38: 3780-4. PMID 11015402 DOI: 10.1128/Jcm.38.10.3780-3784.2000 |
0.43 |
|
| 2000 |
Schupp JM, Klevytska AM, Zinser G, Price LB, Keim P. vrrB, a hypervariable open reading frame in Bacillus anthracis. Journal of Bacteriology. 182: 3989-97. PMID 10869077 DOI: 10.1128/Jb.182.14.3989-3997.2000 |
0.424 |
|
| 2000 |
Keim P, Price LB, Klevytska AM, Smith KL, Schupp JM, Okinaka R, Jackson PJ, Hugh-Jones ME. Multiple-locus variable-number tandem repeat analysis reveals genetic relationships within Bacillus anthracis. Journal of Bacteriology. 182: 2928-36. PMID 10781564 DOI: 10.1128/Jb.182.10.2928-2936.2000 |
0.491 |
|
| 2000 |
Adair DM, Worsham PL, Hill KK, Klevytska AM, Jackson PJ, Friedlander AM, Keim P. Diversity in a variable-number tandem repeat from Yersinia pestis. Journal of Clinical Microbiology. 38: 1516-9. PMID 10747136 |
0.321 |
|
| 2000 |
Busch JD, Miller MP, Paxton EH, Sogge MK, Keim P. Genetic variation in the endangered Southwestern Willow Flycatcher Auk. 117: 586-595. DOI: 10.1642/0004-8038(2000)117[0586:Gvites]2.0.Co;2 |
0.695 |
|
| 1999 |
Okinaka RT, Cloud K, Hampton O, Hoffmaster AR, Hill KK, Keim P, Koehler TM, Lamke G, Kumano S, Mahillon J, Manter D, Martinez Y, Ricke D, Svensson R, Jackson PJ. Sequence and organization of pXO1, the large Bacillus anthracis plasmid harboring the anthrax toxin genes. Journal of Bacteriology. 181: 6509-15. PMID 10515943 DOI: 10.1128/Jb.181.20.6509-6515.1999 |
0.344 |
|
| 1999 |
Jackson PJ, Hill KK, Laker MT, Ticknor LO, Keim P. Genetic comparison of Bacillus anthracis and its close relatives using amplified fragment length polymorphism and polymerase chain reaction analysis. Journal of Applied Microbiology. 87: 263-9. PMID 10475963 DOI: 10.1046/J.1365-2672.1999.00884.X |
0.45 |
|
| 1999 |
Okinaka R, Cloud K, Hampton O, Hoffmaster A, Hill K, Keim P, Koehler T, Lamke G, Kumano S, Manter D, Martinez Y, Ricke D, Svensson R, Jackson P. Sequence, assembly and analysis of pX01 and pX02. Journal of Applied Microbiology. 87: 261-2. PMID 10475962 DOI: 10.1046/J.1365-2672.1999.00883.X |
0.344 |
|
| 1999 |
Keim P, Klevytska AM, Price LB, Schupp JM, Zinser G, Smith KL, Hugh-Jones ME, Okinaka R, Hill KK, Jackson PJ. Molecular diversity in Bacillus anthracis. Journal of Applied Microbiology. 87: 215-7. PMID 10475952 DOI: 10.1046/J.1365-2672.1999.00873.X |
0.455 |
|
| 1999 |
Smith KL, De Vos V, Bryden HB, Hugh-Jones ME, Klevytska A, Price LB, Keim P, Scholl DT. Meso-scale ecology of anthrax in southern Africa: a pilot study of diversity and clustering. Journal of Applied Microbiology. 87: 204-7. PMID 10475949 DOI: 10.1046/J.1365-2672.1999.00871.X |
0.416 |
|
| 1999 |
Schupp JM, Price LB, Klevytska A, Keim P. Internal and flanking sequence from AFLP fragments using ligation- mediated suppression PCR Biotechniques. 26: 905-912. PMID 10337484 DOI: 10.2144/99265St04 |
0.383 |
|
| 1999 |
Price LB, Hugh-Jones M, Jackson PJ, Keim P. Genetic diversity in the protective antigen gene of Bacillus anthracis. Journal of Bacteriology. 181: 2358-62. PMID 10197996 DOI: 10.1128/Jb.181.8.2358-2362.1999 |
0.43 |
|
| 1999 |
Whitham TG, Martinsen GD, Floate KD, Dungey HS, Potts BM, Keim P. Plant hybrid zones affect biodiversity: Tools for a genetic-based understanding of community structure Ecology. 80: 416-428. DOI: 10.1890/0012-9658(1999)080[0416:Phzabt]2.0.Co;2 |
0.309 |
|
| 1999 |
Young WP, Schupp JM, Keim P. DNA methylation and AFLP marker distribution in the soybean genome Theoretical and Applied Genetics. 99: 785-792. DOI: 10.1007/S001220051297 |
0.326 |
|
| 1999 |
Coryell VH, Jessen H, Schupp JM, Webb D, Keim P. Allele-specific hybridization markers for soybean Theoretical and Applied Genetics. 98: 690-696. DOI: 10.1007/S001220051122 |
0.383 |
|
| 1998 |
Jackson PJ, Hugh-Jones ME, Adair DM, Green G, Hill KK, Kuske CR, Grinberg LM, Abramova FA, Keim P. PCR analysis of tissue samples from the 1979 Sverdlovsk anthrax victims: the presence of multiple Bacillus anthracis strains in different victims. Proceedings of the National Academy of Sciences of the United States of America. 95: 1224-9. PMID 9448313 DOI: 10.1073/Pnas.95.3.1224 |
0.365 |
|
| 1998 |
Morgante M, Jurman I, Shi L, Zhu T, Keim P, Rafalski JA. The STR120 satellite DNA of soybean: organization, evolution and chromosomal specificity. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 5: 363-73. PMID 9364938 DOI: 10.1023/A:1018492208247 |
0.343 |
|
| 1998 |
Theimer TC, Keim P. Phylogenetic relationships of peccaries based on mitochondrial cytochrome B DNA sequences Journal of Mammalogy. 79: 566-572. DOI: 10.2307/1382987 |
0.324 |
|
| 1998 |
Travis SE, Ritland K, Whitham TG, Keim P. A genetic linkage map of pinyon pine (Pinus edulis) based on amplified fragment length polymorphisms Theoretical and Applied Genetics. 97: 871-880. DOI: 10.1007/S001220050967 |
0.32 |
|
| 1997 |
Jackson PJ, Walthers EA, Kalif AS, Richmond KL, Adair DM, Hill KK, Kuske CR, Andersen GL, Wilson KH, Hugh-Jones M, Keim P. Characterization of the variable-number tandem repeats in vrrA from different Bacillus anthracis isolates. Applied and Environmental Microbiology. 63: 1400-5. PMID 9097438 DOI: 10.1128/Aem.63.4.1400-1405.1997 |
0.408 |
|
| 1997 |
Keim P, Kalif A, Schupp J, Hill K, Travis SE, Richmond K, Adair DM, Hugh-Jones M, Kuske CR, Jackson P. Molecular evolution and diversity in Bacillus anthracis as detected by amplified fragment length polymorphism markers. Journal of Bacteriology. 179: 818-24. PMID 9006038 DOI: 10.1128/Jb.179.3.818-824.1997 |
0.456 |
|
| 1997 |
Travis SE, Slobodchikoff CN, Keim P. DNA fingerprinting reveals low genetic diversity in Gunnison's prairie dog (Cynomys gunnisoni) Journal of Mammalogy. 78: 725-732. DOI: 10.2307/1382931 |
0.34 |
|
| 1997 |
Keim P, Schupp JM, Travis SE, Clayton K, Zhu T, Shi L, Ferreira A, Webb DM. A High-Density Soybean Genetic Map Based on AFLP Markers Crop Science. 37: 537-543. DOI: 10.2135/Cropsci1997.0011183X003700020038X |
0.308 |
|
| 1996 |
Kimberling DN, Ferreira AR, Shuster SM, Keim P. RAPD marker estimation of genetic structure among isolated northern leopard frog populations in the south-western USA. Molecular Ecology. 5: 521-9. PMID 8794561 DOI: 10.1111/J.1365-294X.1996.Tb00344.X |
0.347 |
|
| 1995 |
Travis SE, Keim P. Differentiating individuals and populations of mule deer using DNA Journal of Wildlife Management. 59: 824-831. DOI: 10.2307/3801963 |
0.318 |
|
| 1995 |
Zhu T, Shi L, Doyle JJ, Keim P. A single nuclear locus phylogeny of soybean based on DNA sequence Theoretical and Applied Genetics. 90: 991-999. DOI: 10.1007/Bf00222912 |
0.378 |
|
| 1994 |
Zhu T, Schupp JM, Oliphant A, Keim P. Hypomethylated sequences: Characterization of the duplicate soybean genome Mgg Molecular &Amp; General Genetics. 244: 638-645. PMID 7969033 DOI: 10.1007/Bf00282754 |
0.353 |
|
| 1994 |
Thomas EP, Blinn DW, Keim P. A test of an allopatric speciation model for congeneric amphipods in an isolated aquatic ecosystem Journal of the North American Benthological Society. 13: 100-109. DOI: 10.2307/1467270 |
0.32 |
|
| 1994 |
Theimer TC, Keim P. Geographic patterns of mitochondrial-DNA variation in collared peccaries Journal of Mammalogy. 75: 121-128. DOI: 10.2307/1382243 |
0.332 |
|
| 1994 |
Keim P, Beavis WD, Schupp JM, Baltazar BM, Mansur BM, Freestone RE, Vahedian M, Webb DM. RFLP Analysis of Soybean Breeding Populations: I. Genetic Structure Differences due to Inbreeding Methods Crop Science. 34: 55-61. DOI: 10.2135/Cropsci1994.0011183X003400010010X |
0.326 |
|
| 1992 |
Blackett RS, Keim P. Big game species identification by deoxyribonucleic acid (DNA) probes Journal of Forensic Sciences. 37: 590-596. PMID 1500901 DOI: 10.1520/Jfs13266J |
0.326 |
|
| 1992 |
Keim P, Beavis W, Schupp J, Freestone R. Evaluation of soybean RFLP marker diversity in adapted germ plasm Theoretical and Applied Genetics. 85: 205-212. DOI: 10.1007/Bf00222861 |
0.328 |
|
| 1990 |
Keim P, Lark KG. The RecE recombination pathway mediates recombination between partially homologous DNA sequences: Structural analysis of recombination products Journal of Structural Biology. 104: 97-106. PMID 2088453 DOI: 10.1016/1047-8477(90)90063-I |
0.318 |
|
| 1990 |
Keim P, Diers BW, Shoemaker RC. Genetic analysis of soybean hard seededness with molecular markers Theoretical and Applied Genetics. 79: 465-469. DOI: 10.1007/Bf00226154 |
0.367 |
|
| 1989 |
Keim P, Shoemaker RC, Palmer RG. Restriction fragment length polymorphism diversity in soybean Theoretical and Applied Genetics. 77: 786-792. DOI: 10.1007/Bf00268327 |
0.385 |
|
| 1989 |
Close PS, Shoemaker RC, Keim P. Distribution of restriction site polymorphism within the chloroplast genome of the genus Glycine, subgenus Soja Theoretical and Applied Genetics. 77: 768-776. DOI: 10.1007/Bf00268325 |
0.392 |
|
| 1988 |
Apuya NR, Frazier BL, Keim P, Jill Roth E, Lark KG. Restriction fragment length polymorphisms as genetic markers in soybean, Glycine max (L.) merrill Theoretical and Applied Genetics. 75: 889-901. DOI: 10.1007/Bf00258050 |
0.351 |
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