David T. Pride, Ph.D. - Publications

2001 Vanderbilt University, Nashville, TN 
Microbiology Biology

40 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Chopyk J, Akrami K, Bavly T, Shin JH, Schwanemann LK, Ly M, Kalia R, Xu Y, Kelley ST, Malhotra A, Torriani FJ, Sweeney DA, Pride DT. Temporal variations in bacterial community diversity and composition throughout intensive care unit renovations. Microbiome. 8: 86. PMID 32513256 DOI: 10.1186/s40168-020-00852-7  0.44
2020 Schulfer A, Santiago-Rodriguez TM, Ly M, Borin JM, Chopyk J, Blaser MJ, Pride DT. Fecal Viral Community Responses to High-Fat Diet in Mice. Msphere. 5. PMID 32102942 DOI: 10.1128/mSphere.00833-19  0.92
2020 Vasudevan R, Shin JH, Chopyk J, Peacock WF, Torriani FJ, Maisel AS, Pride DT. Aseptic Barriers Allow a Clean Contact for Contaminated Stethoscope Diaphragms. Mayo Clinic Proceedings. Innovations, Quality & Outcomes. 4: 21-30. PMID 32055768 DOI: 10.1016/j.mayocpiqo.2019.10.010  0.44
2019 Duan Y, Llorente C, Lang S, Brandl K, Chu H, Jiang L, White RC, Clarke TH, Nguyen K, Torralba M, Shao Y, Liu J, Hernandez-Morales A, Lessor L, Rahman IR, ... ... Pride D, et al. Bacteriophage targeting of gut bacterium attenuates alcoholic liver disease. Nature. PMID 31723265 DOI: 10.1038/s41586-019-1742-x  0.44
2019 Ghose C, Ly M, Schwanemann LK, Shin JH, Atab K, Barr JJ, Little M, Schooley RT, Chopyk J, Pride DT. The Virome of Cerebrospinal Fluid: Viruses Where We Once Thought There Were None. Frontiers in Microbiology. 10: 2061. PMID 31555247 DOI: 10.3389/fmicb.2019.02061  0.44
2019 Jung CE, Chopyk J, Shin JH, Lukacz ES, Brubaker L, Schwanemann LK, Knight R, Wolfe AJ, Pride DT. Benchmarking urine storage and collection conditions for evaluating the female urinary microbiome. Scientific Reports. 9: 13409. PMID 31527753 DOI: 10.1038/s41598-019-49823-5  0.44
2018 Pannaraj PS, Ly M, Cerini C, Saavedra M, Aldrovandi GM, Saboory AA, Johnson KM, Pride DT. Shared and Distinct Features of Human Milk and Infant Stool Viromes. Frontiers in Microbiology. 9: 1162. PMID 29910789 DOI: 10.3389/fmicb.2018.01162  0.44
2017 Santiago-Rodriguez TM, Ly M, Pride DT, Toranzos GA. Draft Genome Sequence of an Enterococcus faecalis ATCC 19433 Siphovirus Isolated from Raw Domestic Sewage. Genome Announcements. 5. PMID 28104647 DOI: 10.1128/genomeA.01179-16  0.44
2016 Ly M, Jones MB, Abeles SR, Santiago-Rodriguez TM, Gao J, Chan IC, Ghose C, Pride DT. Transmission of viruses via our microbiomes. Microbiome. 4: 64. PMID 27912785 DOI: 10.1186/s40168-016-0212-z  0.44
2016 Abeles SR, Jones MB, Santiago-Rodriguez TM, Ly M, Klitgord N, Yooseph S, Nelson KE, Pride DT. Microbial diversity in individuals and their household contacts following typical antibiotic courses. Microbiome. 4: 39. PMID 27473422 DOI: 10.1186/s40168-016-0187-9  0.44
2016 Ghose C, Eugenis I, Sun X, Edwards AN, McBride SM, Pride DT, Kelly CP, Ho DD. Immunogenicity and protective efficacy of recombinant Clostridium difficile flagellar protein FliC. Emerging Microbes & Infections. 5: e8. PMID 26839147 DOI: 10.1038/emi.2016.8  0.36
2016 Ghose C, Eugenis I, Sun X, Edwards AN, McBride SM, Pride DT, Kelly CP, Ho DD. Immunogenicity and protective efficacy of recombinant Clostridium difficile flagellar protein FliC Emerging Microbes and Infections. 5. DOI: 10.1038/emi.2016.10  0.92
2015 Santiago-Rodriguez TM, Ly M, Daigneault MC, Brown IH, McDonald JA, Bonilla N, Vercoe EA, Pride DT. Chemostat culture systems support diverse bacteriophage communities from human feces. Microbiome. 3: 58. PMID 26549756 DOI: 10.1186/s40168-015-0124-3  0.44
2015 Jones MB, Highlander SK, Anderson EL, Li W, Dayrit M, Klitgord N, Fabani MM, Seguritan V, Green J, Pride DT, Yooseph S, Biggs W, Nelson KE, Venter JC. Library preparation methodology can influence genomic and functional predictions in human microbiome research. Proceedings of the National Academy of Sciences of the United States of America. PMID 26512100 DOI: 10.1073/pnas.1519288112  0.92
2015 Abeles SR, Ly M, Santiago-Rodriguez TM, Pride DT. Effects of Long Term Antibiotic Therapy on Human Oral and Fecal Viromes. Plos One. 10: e0134941. PMID 26309137 DOI: 10.1371/journal.pone.0134941  0.92
2015 Santiago-Rodriguez TM, Naidu M, Abeles SR, Boehm TK, Ly M, Pride DT. Transcriptome analysis of bacteriophage communities in periodontal health and disease. Bmc Genomics. 16: 549. PMID 26215258 DOI: 10.1186/s12864-015-1781-0  0.92
2015 Santiago-Rodriguez TM, Naidu M, Jones MB, Ly M, Pride DT. Identification of staphylococcal phage with reduced transcription in human blood through transcriptome sequencing. Frontiers in Microbiology. 6: 216. PMID 26074882 DOI: 10.3389/fmicb.2015.00216  0.92
2015 Lum AG, Ly M, Santiago-Rodriguez TM, Naidu M, Boehm TK, Pride DT. Global transcription of CRISPR loci in the human oral cavity. Bmc Genomics. 16: 401. PMID 25994215 DOI: 10.1186/s12864-015-1615-0  0.92
2015 Edlund A, Santiago-Rodriguez TM, Boehm TK, Pride DT. Bacteriophage and their potential roles in the human oral cavity. Journal of Oral Microbiology. 7: 27423. PMID 25861745 DOI: 10.3402/jom.v7.27423  0.92
2015 Santiago-Rodriguez TM, Ly M, Bonilla N, Pride DT. The human urine virome in association with urinary tract infections. Frontiers in Microbiology. 6: 14. PMID 25667584 DOI: 10.3389/fmicb.2015.00014  0.92
2014 Abeles SR, Pride DT. Molecular bases and role of viruses in the human microbiome. Journal of Molecular Biology. 426: 3892-906. PMID 25020228 DOI: 10.1016/j.jmb.2014.07.002  0.92
2014 Naidu M, Robles-Sikisaka R, Abeles SR, Boehm TK, Pride DT. Characterization of bacteriophage communities and CRISPR profiles from dental plaque. Bmc Microbiology. 14: 175. PMID 24981669 DOI: 10.1186/1471-2180-14-175  0.92
2014 Robles-Sikisaka R, Naidu M, Ly M, Salzman J, Abeles SR, Boehm TK, Pride DT. Conservation of streptococcal CRISPRs on human skin and saliva. Bmc Microbiology. 14: 146. PMID 24903519 DOI: 10.1186/1471-2180-14-146  0.92
2014 Ly M, Abeles SR, Boehm TK, Robles-Sikisaka R, Naidu M, Santiago-Rodriguez T, Pride DT. Altered oral viral ecology in association with periodontal disease. Mbio. 5: e01133-14. PMID 24846382 DOI: 10.1128/mBio.01133-14  0.92
2014 Abeles SR, Robles-Sikisaka R, Ly M, Lum AG, Salzman J, Boehm TK, Pride DT. Human oral viruses are personal, persistent and gender-consistent. The Isme Journal. 8: 1753-67. PMID 24646696 DOI: 10.1038/ismej.2014.31  0.92
2013 Robles-Sikisaka R, Ly M, Boehm T, Naidu M, Salzman J, Pride DT. Association between living environment and human oral viral ecology. The Isme Journal. 7: 1710-24. PMID 23598790 DOI: 10.1038/ismej.2013.63  0.92
2012 Pride DT, Salzman J, Relman DA. Comparisons of clustered regularly interspaced short palindromic repeats and viromes in human saliva reveal bacterial adaptations to salivary viruses. Environmental Microbiology. 14: 2564-76. PMID 22583485 DOI: 10.1111/j.1462-2920.2012.02775.x  0.92
2012 Pride DT, Salzman J, Haynes M, Rohwer F, Davis-Long C, White RA, Loomer P, Armitage GC, Relman DA. Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome. The Isme Journal. 6: 915-26. PMID 22158393 DOI: 10.1038/ismej.2011.169  0.92
2011 Pride DT, Sun CL, Salzman J, Rao N, Loomer P, Armitage GC, Banfield JF, Relman DA. Analysis of streptococcal CRISPRs from human saliva reveals substantial sequence diversity within and between subjects over time. Genome Research. 21: 126-36. PMID 21149389 DOI: 10.1101/gr.111732.110  0.92
2011 Willner D, Furlan M, Schmieder R, Grasis JA, Pride DT, Relman DA, Angly FE, McDole T, Mariella RP, Rohwer F, Haynes M. Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity. Proceedings of the National Academy of Sciences of the United States of America. 108: 4547-53. PMID 20547834 DOI: 10.1073/pnas.1000089107  0.92
2008 Pride DT, Schoenfeld T. Genome signature analysis of thermal virus metagenomes reveals Archaea and thermophilic signatures. Bmc Genomics. 9: 420. PMID 18798991 DOI: 10.1186/1471-2164-9-420  0.92
2008 Allen SS, Evans W, Carlisle J, Hajizadeh R, Nadaf M, Shepherd BE, Pride DT, Johnson JE, Drake WP. Superoxide dismutase A antigens derived from molecular analysis of sarcoidosis granulomas elicit systemic Th-1 immune responses. Respiratory Research. 9: 36. PMID 18439270 DOI: 10.1186/1465-9921-9-36  0.92
2006 Pride DT, Wassenaar TM, Ghose C, Blaser MJ. Evidence of host-virus co-evolution in tetranucleotide usage patterns of bacteriophages and eukaryotic viruses. Bmc Genomics. 7: 8. PMID 16417644 DOI: 10.1186/1471-2164-7-8  0.92
2005 Pei Z, Yang L, Peek RM, Jr Levine SM, Pride DT, Blaser MJ. Bacterial biota in reflux esophagitis and Barrett's esophagus. World Journal of Gastroenterology. 11: 7277-83. PMID 16437628  0.92
2003 Pride DT, Meinersmann RJ, Wassenaar TM, Blaser MJ. Evolutionary implications of microbial genome tetranucleotide frequency biases. Genome Research. 13: 145-58. PMID 12566393 DOI: 10.1101/gr.335003  0.92
2002 Drake WP, Pei Z, Pride DT, Collins RD, Cover TL, Blaser MJ. Molecular analysis of sarcoidosis tissues for mycobacterium species DNA. Emerging Infectious Diseases. 8: 1334-41. PMID 12453366 DOI: 10.3201/eid0811.020318  0.92
2002 Ghose C, Perez-Perez GI, Dominguez-Bello MG, Pride DT, Bravi CM, Blaser MJ. East Asian genotypes of Helicobacter pylori strains in Amerindians provide evidence for its ancient human carriage. Proceedings of the National Academy of Sciences of the United States of America. 99: 15107-11. PMID 12417749 DOI: 10.1073/pnas.242574599  0.92
2002 Pride DT, Blaser MJ. Concerted evolution between duplicated genetic elements in Helicobacter pylori. Journal of Molecular Biology. 316: 629-42. PMID 11866522 DOI: 10.1006/jmbi.2001.5311  0.92
2002 Ando T, Peek RM, Pride D, Levine SM, Takata T, Lee YC, Kusugami K, van der Ende A, Kuipers EJ, Kusters JG, Blaser MJ. Polymorphisms of Helicobacter pylori HP0638 reflect geographic origin and correlate with cagA status. Journal of Clinical Microbiology. 40: 239-46. PMID 11773122 DOI: 10.1128/JCM.40.1.239-246.2002  0.92
2001 Pride DT, Meinersmann RJ, Blaser MJ. Allelic Variation within Helicobacter pylori babA and babB. Infection and Immunity. 69: 1160-71. PMID 11160014 DOI: 10.1128/IAI.69.2.1160-1171.2001  0.92
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