Cristina P. Van Loy, Ph.D. - Related publications

2002 University of Washington, Seattle, Seattle, WA 
Microbiology Biology
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Johansson E, Nielsen AD, Demuth H, Wiberg C, Schjødt CB, Huang T, Chen J, Jensen S, Petersen J, Thygesen P. Identification of Binding Sites on Human Serum Albumin for Somapacitan, a Long-Acting Growth Hormone Derivative. Biochemistry. PMID 32208682 DOI: 10.1021/acs.biochem.0c00019   
2020 Zhang YN, Zhang XQ, Zhang XC, Xu JW, Li LL, Zhu XY, Wang JJ, Wei JY, Mang DZ, Zhang F, Yuan X, Wu X. Key amino acid residues influencing binding affinities of pheromone binding protein from Athetis lepigone to two sex pheromones. Journal of Agricultural and Food Chemistry. PMID 32392414 DOI: 10.1021/acs.jafc.0c01572   
2020 Oliva R, Banerjee S, Cinar H, Ehrt C, Winter R. Alteration of Protein Binding Affinities by Aqueous Two-Phase Systems Revealed by Pressure Perturbation. Scientific Reports. 10: 8074. PMID 32415277 DOI: 10.1038/s41598-020-65053-6   
2020 Zhou J, Wu JH. Binding-Site Match Maker (BSMM): A Computational Method for the Design of Multi-Target Ligands. Molecules (Basel, Switzerland). 25. PMID 32316104 DOI: 10.3390/molecules25081821   
2020 Kumar SP, Patel CN, Rawal RM, Pandya HA. Energetic contributions of amino acid residues and its cross-talk (ECONTACT) to delineate ligand binding mechanism. Proteins. PMID 32323374 DOI: 10.1002/prot.25894   
2020 van Faassen H, Ryan S, Henry KA, Raphael S, Yang Q, Rossotti MA, Brunette E, Jiang S, Haqqani AS, Sulea T, MacKenzie CR, Tanha J, Hussack G. Serum albumin-binding V Hs with variable pH sensitivities enable tailored half-life extension of biologics. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. PMID 32342547 DOI: 10.1096/fj.201903231R   
2020 Dong M, Harikumar KG, Raval SR, Milburn JE, Clark C, Alcala-Torano R, Mobarec JC, Reynolds CA, Ghirlanda G, Christopoulos A, Wootten D, Sexton PM, Miller LJ. Rational development of a high-affinity secretin receptor antagonist. Biochemical Pharmacology. 113929. PMID 32217097 DOI: 10.1016/j.bcp.2020.113929   
2020 Lai MP, Katz FS, Bernard C, Storch J, Stark RE. Two fatty acid-binding proteins expressed in the intestine interact differently with endocannabinoids. Protein Science : a Publication of the Protein Society. PMID 32298508 DOI: 10.1002/pro.3875   
2020 Orlandi C, Deredge D, Ray K, Gohain N, Tolbert W, DeVico AL, Wintrode P, Pazgier M, Lewis GK. Antigen-Induced Allosteric Changes in a Human IgG1 Fc Increase Low-Affinity Fcγ Receptor Binding. Structure (London, England : 1993). PMID 32209433 DOI: 10.1016/j.str.2020.03.001   
2020 Aharon L, Aharoni SL, Radisky ES, Papo N. Quantitative Mapping of Binding Specificity Landscapes for Homologous Targets by using a High‑Throughput Method. The Biochemical Journal. PMID 32296833 DOI: 10.1042/BCJ20200188   
2020 Huang P, Wu S, Yang S, Yan Q, Jiang Z. Structural basis of carbohydrate binding in domain C of a type I pullulanase from Paenibacillus barengoltzii. Acta Crystallographica. Section D, Structural Biology. 76: 447-457. PMID 32355041 DOI: 10.1107/S205979832000409X   
2020 Khan MF, Machuca MA, Rahman MM, Koç C, Norton RS, Smith BJ, Roujeinikova A. Structure-Activity Relationship Study Reveals the Molecular Basis for Specific Sensing of Hydrophobic Amino Acids by the Chemoreceptor Tlp3. Biomolecules. 10. PMID 32403336 DOI: 10.3390/biom10050744   
2020 Yang J, Zhang H, Gong W, Liu Z, Wu H, Hu W, Chen X, Wang L, Wu S, Chen C, Perrett S. -Glutathionylation of human inducible Hsp70 reveals a regulatory mechanism involving the C-terminal α-helical lid. The Journal of Biological Chemistry. PMID 32332101 DOI: 10.1074/jbc.RA119.012372   
2020 Camacho-Hernandez GA, Taylor P. Lessons from nature: Structural studies and drug design driven by a homologous surrogate from invertebrates, AChBP. Neuropharmacology. 108108. PMID 32353365 DOI: 10.1016/j.neuropharm.2020.108108   
2020 Qiao P, Liu Y, Zhang T, Benavides A, Laganowsky A. Insight into the selectivity of Kir3.2 toward phosphatidylinositides. Biochemistry. PMID 32372643 DOI: 10.1021/acs.biochem.0c00163   
2020 Wang Q, Jiang M, Isupov MN, Chen Y, Littlechild JA, Sun L, Wu X, Wang Q, Yang W, Chen L, Li Q, Wu Y. The crystal structure of Arabidopsis BON1 provides insights into the copine protein family. The Plant Journal : For Cell and Molecular Biology. PMID 32369638 DOI: 10.1111/tpj.14797   
2020 Mariutti RB, Hernández-González JE, Nascimento AFZ, de Morais MAB, Murakami MT, Carareto CMA, Arni RK. A single P115Q mutation modulates specificity in the Corynebacterium pseudotuberculosis arginine repressor. Biochimica Et Biophysica Acta. General Subjects. 1864: 129597. PMID 32156582 DOI: 10.1016/j.bbagen.2020.129597   
2020 Liu B, Zhang Z, Lu S, He Q, Deng N, Meng H, Pan C, Li H, Liu M, Huang A, Shen F. In-silico analysis of ligand-receptor binding patterns of α-MMC, TCS and MAP30 protein to LRP1 receptor. Journal of Molecular Graphics & Modelling. 98: 107619. PMID 32311663 DOI: 10.1016/j.jmgm.2020.107619   
2020 Roig-Molina E, Sánchez-Angulo M, Seele J, García-Asencio F, Nau R, Sanz JM, Maestro B. Searching for Antipneumococcal Targets: Choline-Binding Modules as Phagocytosis Enhancers. Acs Infectious Diseases. PMID 32135064 DOI: 10.1021/acsinfecdis.9b00344   
2020 Yin Z. Virtual Screening by 2-D Fingerprints, Shape and Docking for Discovering New Chemotypes of Activator Protein-1 Inhibitors. Journal of Biomolecular Structure & Dynamics. 1-12. PMID 32223539 DOI: 10.1080/07391102.2020.1749130   
2020 Yamazaki R, Furukawa A, Hirayasu K, Yumoto K, Fukuhara H, Arase H, Maenaka K. Molecular mechanism of the recognition of bacterially cleaved immunoglobulin by the immune regulatory receptor LILRA2. The Journal of Biological Chemistry. PMID 32424043 DOI: 10.1074/jbc.RA120.013354   
2020 Berk JM, Lim C, Ronau JA, Chaudhuri A, Chen H, Beckmann JF, Loria JP, Xiong Y, Hochstrasser M. A deubiquitylase with an unusually high-affinity ubiquitin-binding domain from the scrub typhus pathogen Orientia tsutsugamushi. Nature Communications. 11: 2343. PMID 32393759 DOI: 10.1038/s41467-020-15985-4   
2020 Crittenden CM, Novelli ET, Xu G, Giles DH, Fies WA, Mehaffey MR, Dalby KN, Webb LJ, Brodbelt JS. Structural Evaluation of Protein/Metal Complexes via Native Electrospray Ultraviolet Photodissociation Mass Spectrometry. Journal of the American Society For Mass Spectrometry. PMID 32275426 DOI: 10.1021/jasms.0c00066   
2020 Brodzki M, Michałowski MA, Gos M, Mozrzymas JW. Mutations of αF45 residue of GABA receptor loop G reveal its involvement in agonist binding and channel opening/closing transitions. Biochemical Pharmacology. 177: 113917. PMID 32194055 DOI: 10.1016/j.bcp.2020.113917   
2020 Jayaraman S, Chavez OR, Pérez A, Miñambres I, Sánchez-Quesada JL, Gursky O. Binding to heparin triggers deleterious structural and biochemical changes in human low-density lipoprotein, which are amplified in hyperglycemia. Biochimica Et Biophysica Acta. Molecular and Cell Biology of Lipids. 158712. PMID 32289504 DOI: 10.1016/j.bbalip.2020.158712   
2020 Khowsathit J, Bazzoli A, Cheng H, Karanicolas J. Computational Design of an Allosteric Antibody Switch by Deletion and Rescue of a Complex Structural Constellation. Acs Central Science. 6: 390-403. PMID 32232139 DOI: 10.1021/acscentsci.9b01065   
2020 Li DW, Xie M, Bruschweiler R. Quantitative cooperative binding model for intrinsically disordered proteins interacting with nanomaterials. Journal of the American Chemical Society. PMID 32426975 DOI: 10.1021/jacs.0c01885   
2020 Tan YZ, Zhang L, Rodrigues J, Zheng RB, Giacometti SI, Rosário AL, Kloss B, Dandey VP, Wei H, Brunton R, Raczkowski AM, Athayde D, Catalão MJ, Pimentel M, Clarke OB, et al. Cryo-EM Structures and Regulation of Arabinofuranosyltransferase AftD from Mycobacteria. Molecular Cell. PMID 32386575 DOI: 10.1016/j.molcel.2020.04.014   
2020 Smith JK, Pfaendtner J. Elucidating the Molecular Interactions Between Uremic Toxins and the Sudlow II Binding Site of Human Serum Albumin. The Journal of Physical Chemistry. B. PMID 32338898 DOI: 10.1021/acs.jpcb.0c02015   
2020 Mende M, Tsouka A, Heidepriem J, Paris G, Mattes DS, Eickelmann S, Bordoni V, Wawrzinek R, Fuchsberger FF, Seeberger PH, Rademacher C, Delbianco M, Mallagaray A, Loeffler FF. On-Chip Neo-Glycopeptide Synthesis for Multivalent Glycan Presentation. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 32315099 DOI: 10.1002/chem.202001291   
2020 Adamec F, Farci D, Bína D, Litvín R, Khan T, Fuciman M, Piano D, Polívka T. Photophysics of deinoxanthin, the keto-carotenoid bound to the main S-layer unit of Deinococcus radiodurans. Photochemical & Photobiological Sciences : Official Journal of the European Photochemistry Association and the European Society For Photobiology. PMID 32236233 DOI: 10.1039/d0pp00031k   
2020 Yuan M, Wu NC, Zhu X, Lee CD, So RTY, Lv H, Mok CKP, Wilson IA. A highly conserved cryptic epitope in the receptor-binding domains of SARS-CoV-2 and SARS-CoV. Science (New York, N.Y.). PMID 32245784 DOI: 10.1126/science.abb7269   
2020 Yadav DK, Kumar S, Choi EH, Chaudhary S, Kim MH. Computational Modeling on Aquaporin-3 as Skin Cancer Target: A Virtual Screening Study. Frontiers in Chemistry. 8: 250. PMID 32351935 DOI: 10.3389/fchem.2020.00250   
2020 Plaza-Garrido M, Salinas-García MC, Martínez JC, Cámara-Artigas A. The effect of an engineered ATCUN motif on the structure and biophysical properties of the SH3 domain of c-Src tyrosine kinase. Journal of Biological Inorganic Chemistry : Jbic : a Publication of the Society of Biological Inorganic Chemistry. PMID 32279137 DOI: 10.1007/s00775-020-01785-0   
2020 Li Z, Chinnasamy S, Zhang Y, Wei DQ. Molecular dynamics simulation and binding free energy calculations of Microcin J25 Binding to the FhuA Receptor. Journal of Biomolecular Structure & Dynamics. 1-11. PMID 32241226 DOI: 10.1080/07391102.2020.1751293   
2020 Zhang Z, Wang Y, Ding Y, Hattori M. Structure-based engineering of anti-GFP nanobody tandems as ultra-high-affinity reagents for purification. Scientific Reports. 10: 6239. PMID 32277083 DOI: 10.1038/s41598-020-62606-7   
2020 Calabrese AN, Schiffrin B, Watson M, Karamanos TK, Walko M, Humes JR, Horne JE, White P, Wilson AJ, Kalli AC, Tuma R, Ashcroft AE, Brockwell DJ, Radford SE. Inter-domain dynamics in the chaperone SurA and multi-site binding to its outer membrane protein clients. Nature Communications. 11: 2155. PMID 32358557 DOI: 10.1038/s41467-020-15702-1   
2020 Gu C, Cai J, Fan X, Bian Y, Yang X, Xia Q, Sun C, Jiang X. Theoretical investigation of AhR binding property with relevant structural requirements for AhR-mediated toxicity of polybrominated diphenyl ethers. Chemosphere. 249: 126554. PMID 32213394 DOI: 10.1016/j.chemosphere.2020.126554   
2020 Amacher JF, Brooks L, Hampton TH, Madden DR. Specificity in PDZ-peptide interaction networks: Computational analysis and review. Journal of Structural Biology: X. 4: 100022. PMID 32289118 DOI: 10.1016/j.yjsbx.2020.100022   
2020 Niu C, Zhao Y, Bobst CE, Savinov SN, Kaltashov IA. Identification of protein recognition elements within heparin chains using enzymatic foot-printing in solution and on-line SEC/MS. Analytical Chemistry. PMID 32347711 DOI: 10.1021/acs.analchem.0c00115   
2020 Silva A, Xiao W, Wang Y, Wang W, Chang HW, Ames JB, Lam KS, Zhang Y. Structure-Activity Relationship of RGD-Containing Cyclic Octapeptide and αvβ3 Integrin Allows for Rapid Identification of a New Peptide Antagonist. International Journal of Molecular Sciences. 21. PMID 32349271 DOI: 10.3390/ijms21093076   
2020 Solanki AK, Kondkar AA, Fogerty J, Su Y, Kim SH, Lipschutz JH, Nihalani D, Perkins BD, Lobo GP. A Functional Binding Domain in the Rbpr2 Receptor Is Required for Vitamin A Transport, Ocular Retinoid Homeostasis, and Photoreceptor Cell Survival in Zebrafish. Cells. 9. PMID 32365517 DOI: 10.3390/cells9051099   
2020 Koromyslova AD, Devant JM, Kilic T, Sabin CD, Malak V, Hansman GS. Nanobody mediated neutralization reveals an Achilles heel for norovirus. Journal of Virology. PMID 32321816 DOI: 10.1128/JVI.00660-20   
2020 Zhang YN, Xu JW, Zhang XC, Zhang XQ, Li LL, Yuan X, Mang DZ, Zhu XY, Zhang F, Dewer Y, Xu L, Wu XM. Organophosphorus insecticide interacts with the pheromone-binding proteins of Athetis lepigone: Implication for olfactory dysfunction. Journal of Hazardous Materials. 397: 122777. PMID 32388456 DOI: 10.1016/j.jhazmat.2020.122777   
2020 Glöckner S, Ngo K, Wagner B, Heine A, Klebe G. The Influence of Varying Fluorination Patterns on the Thermodynamics and Kinetics of Benzenesulfonamide Binding to Human Carbonic Anhydrase II. Biomolecules. 10. PMID 32230853 DOI: 10.3390/biom10040509   
2020 Li XP, Harijan RK, Kahn JN, Schramm VL, Tumer NE. Small molecule inhibitors targeting the interaction of ricin toxin A subunit with ribosomes. Acs Infectious Diseases. PMID 32428396 DOI: 10.1021/acsinfecdis.0c00127   
2020 Lee KY, Cheon SH, Kim DG, Lee SJ, Lee BJ. A structural study of TatD from elucidates a putative DNA-binding mode of a Mg-dependent nuclease. Iucrj. 7: 509-521. PMID 32431834 DOI: 10.1107/S2052252520003917   
2020 Wu FJ, Williams LM, Abdul-Ridha A, Gunatilaka A, Vaid TM, Kocan M, Whitehead AR, Griffin MDW, Bathgate RAD, Scott DJ, Gooley PR. Probing the correlation between ligand efficacy and conformational diversity at the α1A-adrenoreceptor reveals allosteric coupling of its microswitches. The Journal of Biological Chemistry. PMID 32303636 DOI: 10.1074/jbc.RA120.012842   
2020 Zhang H, Saravanan KM, Lin J, Liao L, Ng JT, Zhou J, Wei Y. DeepBindPoc: a deep learning method to rank ligand binding pockets using molecular vector representation. Peerj. 8: e8864. PMID 32292649 DOI: 10.7717/peerj.8864   
2020 Guest EE, Oatley SA, Macdonald SJF, Hirst JD. Molecular Simulation of αVβ6 Integrin Inhibitors. Journal of Chemical Information and Modeling. PMID 32421320 DOI: 10.1021/acs.jcim.0c00254