Noah G. Hoffman, Ph.D. - Publications

Affiliations: 
2003 University of North Carolina, Chapel Hill, Chapel Hill, NC 
Area:
Microbiology Biology, Molecular Biology

32/65 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Srinivasan S, Morgan MT, Fiedler TL, Djukovic D, Hoffman NG, Raftery D, Marrazzo JM, Fredricks DN. Metabolic signatures of bacterial vaginosis. Mbio. 6. PMID 25873373 DOI: 10.1128/Mbio.00204-15  0.84
2014 Salipante SJ, Kawashima T, Rosenthal C, Hoogestraat DR, Cummings LA, Sengupta DJ, Harkins TT, Cookson BT, Hoffman NG. Performance comparison of Illumina and ion torrent next-generation sequencing platforms for 16S rRNA-based bacterial community profiling. Applied and Environmental Microbiology. 80: 7583-91. PMID 25261520 DOI: 10.1128/Aem.02206-14  0.84
2014 Salipante SJ, Hoogestraat DR, Abbott AN, Sengupta DJ, Cummings LA, Butler-Wu SM, Stephens K, Cookson BT, Hoffman NG. Coinfection of Fusobacterium nucleatum and Actinomyces israelii in mastoiditis diagnosed by next-generation DNA sequencing Journal of Clinical Microbiology. 52: 1789-1792. PMID 24574281 DOI: 10.1128/Jcm.03133-13  0.84
2013 Srinivasan S, Morgan MT, Liu C, Matsen FA, Hoffman NG, Fiedler TL, Agnew KJ, Marrazzo JM, Fredricks DN. More than meets the eye: associations of vaginal bacteria with gram stain morphotypes using molecular phylogenetic analysis. Plos One. 8: e78633. PMID 24302980 DOI: 10.1371/Journal.Pone.0078633  0.84
2013 Salipante SJ, SenGupta DJ, Hoogestraat DR, Cummings LA, Bryant BH, Natividad C, Thielges S, Monsaas PW, Chau M, Barbee LA, Rosenthal C, Cookson BT, Hoffman NG. Molecular diagnosis of actinomadura madurae infection by 16S rRNA deep sequencing Journal of Clinical Microbiology. 51: 4262-4265. PMID 24108607 DOI: 10.1128/Jcm.02227-13  0.84
2013 Salipante SJ, Sengupta DJ, Rosenthal C, Costa G, Spangler J, Sims EH, Jacobs MA, Miller SI, Hoogestraat DR, Cookson BT, McCoy C, Matsen FA, Shendure J, Lee CC, Harkins TT, ... Hoffman NG, et al. Rapid 16S rRNA next-generation sequencing of polymicrobial clinical samples for diagnosis of complex bacterial infections. Plos One. 8: e65226. PMID 23734239 DOI: 10.1371/Journal.Pone.0065226  0.84
2013 McCoy CO, Gallagher A, Hoffman NG, Matsen FA. Nestly--a framework for running software with nested parameter choices and aggregating results. Bioinformatics (Oxford, England). 29: 387-8. PMID 23220574 DOI: 10.1093/Bioinformatics/Bts696  0.84
2013 Ramaiah VK, Sharma D, Ma L, Prathep S, Hoffman NG, Vavilala MS. Admission oxygenation and ventilation parameters associated with discharge survival in severe pediatric traumatic brain injury. Child's Nervous System : Chns : Official Journal of the International Society For Pediatric Neurosurgery. 29: 629-34. PMID 23207977 DOI: 10.1007/s00381-012-1984-5  0.84
2013 Dickerson JA, Schmeling M, Hoofnagle AN, Hoffman NG. Design and implementation of software for automated quality control and data analysis for a complex LC/MS/MS assay for urine opiates and metabolites. Clinica Chimica Acta; International Journal of Clinical Chemistry. 415: 290-4. PMID 23159299 DOI: 10.1016/j.cca.2012.10.055  0.84
2012 Srinivasan S, Hoffman NG, Morgan MT, Matsen FA, Fiedler TL, Hall RW, Ross FJ, McCoy CO, Bumgarner R, Marrazzo JM, Fredricks DN. Bacterial communities in women with bacterial vaginosis: high resolution phylogenetic analyses reveal relationships of microbiota to clinical criteria. Plos One. 7: e37818. PMID 22719852 DOI: 10.1371/Journal.Pone.0037818  0.84
2012 Matsen FA, Hoffman NG, Gallagher A, Stamatakis A. A format for phylogenetic placements. Plos One. 7: e31009. PMID 22383988 DOI: 10.1371/Journal.Pone.0031009  0.84
2011 Greisman HA, Hoffman NG, Yi HS. Rapid high-resolution mapping of balanced chromosomal rearrangements on tiling CGH arrays. The Journal of Molecular Diagnostics : Jmd. 13: 621-33. PMID 21907824 DOI: 10.1016/j.jmoldx.2011.07.005  0.84
2011 Strathmann FG, Baird GS, Hoffman NG. Simulations of delta check rule performance to detect specimen mislabeling using historical laboratory data. Clinica Chimica Acta; International Journal of Clinical Chemistry. 412: 1973-7. PMID 21782806 DOI: 10.1016/J.Cca.2011.07.007  0.84
2011 Pecha T, Sharma D, Hoffman NG, Sookplung P, Curry P, Vavilala MS. Hyperglycemia during craniotomy for adult traumatic brain injury. Anesthesia and Analgesia. 113: 336-42. PMID 21596888 DOI: 10.1213/ANE.0b013e31821d3dde  0.84
2008 Hoffman NG, Cook L, Atienza EE, Limaye AP, Jerome KR. Marked variability of BK virus load measurement using quantitative real-time PCR among commonly used assays. Journal of Clinical Microbiology. 46: 2671-80. PMID 18562587 DOI: 10.1128/JCM.00258-08  0.84
2008 Knies JL, Dang KK, Vision TJ, Hoffman NG, Swanstrom R, Burch CL. Compensatory evolution in RNA secondary structures increases substitution rate variation among sites. Molecular Biology and Evolution. 25: 1778-87. PMID 18535013 DOI: 10.1093/Molbev/Msn130  0.84
2008 Patel MB, Hoffman NG, Swanstrom R. Subtype-specific conformational differences within the V3 region of subtype B and subtype C human immunodeficiency virus type 1 Env proteins. Journal of Virology. 82: 903-16. PMID 18003735 DOI: 10.1128/Jvi.01444-07  0.84
2007 Hoffman NG, Cookson BT. Case 8-2007: a man with chest pain followed by cardiac arrest. The New England Journal of Medicine. 356: 2652-3; author reply. PMID 17582082 DOI: 10.1056/Nejmc076150  0.84
2004 Henderson GJ, Hoffman NG, Ping LH, Fiscus SA, Hoffman IF, Kitrinos KM, Banda T, Martinson FE, Kazembe PN, Chilongozi DA, Cohen MS, Swanstrom R. HIV-1 populations in blood and breast milk are similar. Virology. 330: 295-303. PMID 15527854 DOI: 10.1016/J.Virol.2004.09.004  0.84
2004 Ritola K, Pilcher CD, Fiscus SA, Hoffman NG, Nelson JA, Kitrinos KM, Hicks CB, Eron JJ, Swanstrom R. Multiple V1/V2 env variants are frequently present during primary infection with human immunodeficiency virus type 1. Journal of Virology. 78: 11208-18. PMID 15452240 DOI: 10.1128/Jvi.78.20.11208-11218.2004  0.84
2004 Brumme ZL, Dong WW, Yip B, Wynhoven B, Hoffman NG, Swanstrom R, Jensen MA, Mullins JI, Hogg RS, Montaner JS, Harrigan PR. Clinical and immunological impact of HIV envelope V3 sequence variation after starting initial triple antiretroviral therapy. Aids (London, England). 18: F1-9. PMID 15090786 DOI: 10.1097/00002030-200403050-00001  0.84
2003 Hoffman NG, Schiffer CA, Swanstrom R. Covariation of amino acid positions in HIV-1 protease. Virology. 314: 536-48. PMID 14554082 DOI: 10.1016/S0042-6822(03)00484-7  0.84
2003 Kitrinos KM, Hoffman NG, Nelson JA, Swanstrom R. Turnover of env variable region 1 and 2 genotypes in subjects with late-stage human immunodeficiency virus type 1 infection. Journal of Virology. 77: 6811-22. PMID 12768001 DOI: 10.1128/Jvi.77.12.6811-6822.2003  0.84
2002 Hoffman NG, Seillier-Moiseiwitsch F, Ahn J, Walker JM, Swanstrom R. Variability in the human immunodeficiency virus type 1 gp120 Env protein linked to phenotype-associated changes in the V3 loop. Journal of Virology. 76: 3852-64. PMID 11907225 DOI: 10.1128/Jvi.76.8.3852-3864.2002  0.84
2001 Resch W, Hoffman N, Swanstrom R. Improved success of phenotype prediction of the human immunodeficiency virus type 1 from envelope variable loop 3 sequence using neural networks. Virology. 288: 51-62. PMID 11543657 DOI: 10.1006/Viro.2001.1087  0.84
2001 McGrath KM, Hoffman NG, Resch W, Nelson JA, Swanstrom R. Using HIV-1 sequence variability to explore virus biology. Virus Research. 76: 137-60. PMID 11410314 DOI: 10.1016/S0168-1702(01)00271-4  0.84
1998 Kurakin A, Hoffman NG, Kay BK. Molecular recognition properties of the C-terminal Sh3 domain of the Cb1 associated protein, Cap Journal of Peptide Research. 52: 331-337. PMID 9894838 DOI: 10.1111/J.1399-3011.1998.Tb00657.X  0.84
1998 Yamabhai M, Hoffman NG, Hardison NL, McPherson PS, Castagnoli L, Cesareni G, Kay BK. Intersectin, a novel adaptor protein with two Eps15 homology and five Src homology 3 domains. The Journal of Biological Chemistry. 273: 31401-7. PMID 9813051 DOI: 10.1074/Jbc.273.47.31401  0.84
1998 Ribon V, Printen JA, Hoffman NG, Kay BK, Saltiel AR. A novel, multifuntional c-Cbl binding protein in insulin receptor signaling in 3T3-L1 adipocytes. Molecular and Cellular Biology. 18: 872-9. PMID 9447983 DOI: 10.1128/Mcb.18.2.872  0.84
1996 Sparks AB, Hoffman NG, McConnell SJ, Fowlkes DM, Kay BK. Cloning of ligand targets: Systematic isolation of SH3 domain-containing proteins Nature Biotechnology. 14: 741-744. PMID 9630982 DOI: 10.1038/Nbt0696-741  0.84
1996 Hoffman NG, Sparks AB, Carter JM, Kay BK. Binding properties of SH3 peptide ligands identified from phage-displayed random peptide libraries. Molecular Diversity. 2: 5-12. PMID 9238627 DOI: 10.1007/Bf01718694  0.84
1996 Sparks AB, Rider JE, Hoffman NG, Fowlkes DM, Quilliam LA, Kay BK. Distinct ligand preferences of Src homology 3 domains from Src, Yes, Abl, Cortactin, p53bp2, PLCγ, Crk, and Grb2 Proceedings of the National Academy of Sciences of the United States of America. 93: 1540-1544. PMID 8643668 DOI: 10.1073/Pnas.93.4.1540  0.84
Low-probability matches
2020 Whitney BM, Srinivasan S, Tapia K, Muriuki EM, Chohan BH, Wallis JM, Liu C, Guthrie BL, McClelland RS, Hoffman NG, Fredricks DN, Roxby AC. Influence of intramuscular depot-medroxyprogesterone acetate initiation on vaginal microbiota in the postpartum period. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 33354707 DOI: 10.1093/cid/ciaa1876  0.01
2020 Mitchell CM, Srinivasan S, Ma N, Reed SD, Wu MC, Hoffman NG, Valint DJ, Proll S, Fiedler TL, Agnew KJ, Guthrie KA, Fredricks DN. Bacterial communities associated with abnormal Nugent score are different in pre- versus postmenopausal women. The Journal of Infectious Diseases. PMID 33107562 DOI: 10.1093/infdis/jiaa675  0.01
2020 Barrett SR, Hoffman NG, Rosenthal C, Bryan A, Marshall DA, Lieberman J, Greninger AL, Peddu V, Cookson BT, Salipante SJ. Sensitive identification of bacterial DNA in clinical specimens by broad range 16S rRNA enrichment. Journal of Clinical Microbiology. PMID 33028602 DOI: 10.1128/JCM.01605-20  0.01
2020 Srinivasan S, Chambers LC, Tapia KA, Hoffman NG, Munch MM, Morgan JL, Domogala D, Lowens MS, Proll S, Huang ML, Soge OO, Jerome KR, Golden MR, Hughes JP, Fredricks DN, et al. Urethral microbiota in men: Association of Haemophilus influenzae and Mycoplasma penetrans with nongonococcal urethritis. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 32750107 DOI: 10.1093/Cid/Ciaa1123  0.01
2020 Mani NS, Budak JZ, Lan KF, Bryson-Cahn C, Zelikoff A, Barker GEC, Grant CW, Hart K, Barbee CJ, Sandoval MD, Dostal CL, Corcorran M, Ungerleider HM, Gates JO, Olin SV, ... ... Hoffman NG, et al. Prevalence of COVID-19 Infection and Outcomes Among Symptomatic Healthcare Workers in Seattle, Washington. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 32548613 DOI: 10.1093/Cid/Ciaa761  0.01
2020 Tettamanti Boshier FA, Srinivasan S, Lopez A, Hoffman NG, Proll S, Fredricks DN, Schiffer JT. Complementing 16S rRNA Gene Amplicon Sequencing with Total Bacterial Load To Infer Absolute Species Concentrations in the Vaginal Microbiome. Msystems. 5. PMID 32265316 DOI: 10.1128/mSystems.00777-19  0.01
2020 Cummings LA, Hoogestraat DR, Rassoulian-Barrett SL, Rosenthal CA, Salipante SJ, Cookson BT, Hoffman NG. Comprehensive evaluation of complex polymicrobial specimens using next generation sequencing and standard microbiological culture. Scientific Reports. 10: 5446. PMID 32214207 DOI: 10.1038/S41598-020-62424-X  0.01
2019 McLean K, Rosenthal CA, Sengupta D, Owens J, Cookson B, Hoffman NG, Salipante SJ. Improved species level clinical identification of through broad range PCR and sequencing. Journal of Clinical Microbiology. PMID 31434720 DOI: 10.1128/Jcm.00986-19  0.01
2019 Winston McPherson G, Long T, Salipante SJ, Rongitsch JA, Hoffman NG, Stephens K, Penewit K, Greene DN. The Vaginal Microbiome of Transgender Men. Clinical Chemistry. 65: 199-207. PMID 30602481 DOI: 10.1373/Clinchem.2018.293654  0.01
2018 Khan J, Hoffman N, Tsang H, Pagano M, Mathias P. Development of a Workload Report to Optimize Staffing in a Transfusion Services Laboratory American Journal of Clinical Pathology. 150: S144-S144. DOI: 10.1093/Ajcp/Aqy112.342  0.01
2017 Mitchell CM, Srinivasan S, Plantinga A, Wu MC, Reed SD, Guthrie KA, LaCroix AZ, Fiedler T, Munch M, Liu C, Hoffman NG, Blair IA, Newton K, Freeman EW, Joffe H, et al. Associations between improvement in genitourinary symptoms of menopause and changes in the vaginal ecosystem. Menopause (New York, N.Y.). PMID 29206774 DOI: 10.1097/Gme.0000000000001037  0.01
2017 Mitchell CM, Srinivasan S, Zhan X, Wu MC, Reed SD, Guthrie KA, LaCroix AZ, Fiedler T, Munch M, Liu C, Hoffman NG, Blair IA, Newton K, Freeman EW, Joffe H, et al. Vaginal microbiota and genitourinary menopausal symptoms: a cross-sectional analysis. Menopause (New York, N.Y.). PMID 28640154 DOI: 10.1097/Gme.0000000000000904  0.01
2017 Golob JL, Margolis E, Hoffman NG, Fredricks DN. Evaluating the accuracy of amplicon-based microbiome computational pipelines on simulated human gut microbial communities. Bmc Bioinformatics. 18: 283. PMID 28558684 DOI: 10.1186/S12859-017-1690-0  0.01
2016 Cummings LA, Kurosawa K, Hoogestraat DR, SenGupta DJ, Candra F, Doyle M, Thielges S, Land TA, Rosenthal CA, Hoffman NG, Salipante SJ, Cookson BT. Clinical Next Generation Sequencing Outperforms Standard Microbiological Culture for Characterizing Polymicrobial Samples. Clinical Chemistry. PMID 27624135 DOI: 10.1373/Clinchem.2016.258806  0.01
2016 Srinivasan S, Munch MM, Sizova MV, Fiedler TL, Kohler CM, Hoffman NG, Liu C, Agnew KJ, Marrazzo JM, Epstein SS, Fredricks DN. More Easily Cultivated Than Identified: Classical Isolation With Molecular Identification of Vaginal Bacteria. The Journal of Infectious Diseases. 214: S21-8. PMID 27449870 DOI: 10.1093/Infdis/Jiw192  0.01
2016 Salipante SJ, Kawashima T, Rosenthal C, Hoogestraat DR, Cummings LA, Sengupta DJ, Harkins TT, Cookson BT, Hoffman NG. Erratum for Salipante et al., Performance Comparison of Illumina and Ion Torrent Next-Generation Sequencing Platforms for 16S rRNA-Based Bacterial Community Profiling. Applied and Environmental Microbiology. 82: 4453. PMID 27364849 DOI: 10.1128/Aem.01390-16  0.01
2016 Mathias PC, Turner EH, Scroggins SM, Salipante SJ, Hoffman NG, Pritchard CC, Shirts BH. Applying Ancestry and Sex Computation as a Quality Control Tool in Targeted Next-Generation Sequencing. American Journal of Clinical Pathology. 145: 308-15. PMID 27124912 DOI: 10.1093/Ajcp/Aqv098  0.01
2016 White AA, McKinney CM, Hoffman NG, Sutton PR. Brief report: optimizing vitamin D naming conventions in computerized order entry to support high-value care. Journal of the American Medical Informatics Association : Jamia. PMID 27107453 DOI: 10.1093/jamia/ocw038  0.01
2015 Baley JW, Hoffman NG. The Impact of the Proposed Changes for the DSM-5 on Diagnoses of First-time DUI/DWI Offenders Substance Use and Misuse. 1-6. DOI: 10.3109/10826084.2015.1027923  0.01
2013 Srinivasan S, Morgan MT, Liu C, Matsen FA, Hoffman NG, Fiedler TL, Agnew KJ, Marrazzo JM, Fredricks DN. O05.3 More Than Meets the Eye: A Molecular Phylogenetic Analysis Reveals Importance of Novel Bacteria in Bacterial Vaginosis (BV) Sexually Transmitted Infections. 89: A35.1-A35. DOI: 10.1136/Sextrans-2013-051184.0109  0.01
2013 Etcheverry PE, Le B, Hoffman NG. Predictors of friend approval for romantic relationships Personal Relationships. 20: 69-83. DOI: 10.1111/J.1475-6811.2012.01397.X  0.01
2010 Etcheverry PE, Hoffman NG, Agnew CR. Romantic partner influence on young adult cigarette smoking: Testing a behavioral mechanism Social Influence. 5: 289-305. DOI: 10.1080/15534510.2010.502044  0.01
2008 Greisman HA, Greiner TC, Yi HS, Hoffman NG. High-Throughput Cloning of T(11;14) Breakpoints Outside the Major Translocation Cluster in Mantle Cell Lymphoma Blood. 112: 3752-3752. DOI: 10.1182/blood.v112.11.3752.3752  0.01
2007 Greisman HA, Yi HS, Hoffman NG. transCGH: Rapid Identification and High-Resolution Mapping of Balanced IgH Translocations in Archival DNA Using Custom Oligonucleotide Arrays. Blood. 110: 459-459. DOI: 10.1182/blood.v110.11.459.459  0.01
2005 Hoffman NG, Schiffer CA, Swanstrom R. Erratum to “Covariation of amino acid positions in HIV-1 protease” [Virology 314 (2003) 536–548] Virology. 331: 206-207. DOI: 10.1016/J.Virol.2004.10.029  0.01
2005 Kotyk JJ, Pagel MD, Deppermann KL, Colletti RF, Hoffman NG, Yannakakis EJ, Das PK, Ackerman JJH. High-throughput determination of oil content in corn kernels using nuclear magnetic resonance Imaging Jaocs, Journal of the American Oil Chemists' Society. 82: 855-862. DOI: 10.1007/s11746-005-1155-5  0.01
2001 McGrath KM, Hoffman NG, Resch W, Nelson JA, Swanstrom R. Erratum to “Using HIV-1 sequence variability to explore virus biology” Virus Research. 80: 125. DOI: 10.1016/S0168-1702(01)00349-5  0.01
1997 Ward JG, Blomberg P, Hoffman N, Yao MC. The intranuclear organization of normal, hemizygous and excision-deficient rRNA genes during developmental amplification in Tetrahymena thermophila. Chromosoma. 106: 233-42. PMID 9254725 DOI: 10.1007/s004120050244  0.01
1995 Kotyk JJ, Hoffman NG, Hutton WC, Bretthorst GL, Ackerman JJH. Comparison of Fourier and Bayesian Analysis of NMR Signals. II. Examination of Truncated Free Induction Decay NMR Data Journal of Magnetic Resonance, Series A. 116: 1-9. DOI: 10.1006/jmra.1995.1183  0.01
1992 Gurnack AM, Hoffman NG. Elderly alcohol misuse Substance Use and Misuse. 27: 869-878. DOI: 10.3109/10826089209068771  0.01
1992 Kotyk JJ, Hoffman NG, Hutton WC, Larry Bretthorst G, Ackerman JJH. Comparison of Fourier and Bayesian analysis of nmr signals. I. Well-separated resonances (the single-frequency case) Journal of Magnetic Resonance (1969). 98: 483-500. DOI: 10.1016/0022-2364(92)90003-P  0.01
1990 Harrison PA, Edwall GE, Hoffman NG, Worthen MD. Correlates of sexual abuse among boys in treatment for chemical dependency Journal of Adolescent Chemical Dependency. 1: 53-67. DOI: 10.1300/J272v01n01_04  0.01
1987 Hoffman NG, Harrison PA. Patient variations in alcohol treatment utilization Business and Health. 4: 16-18. PMID 10280670  0.01
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