Ruth E. Richardson, Ph.D. - Publications

Affiliations: 
2001 University of California, Berkeley, Berkeley, CA 
Area:
Environmental Engineering, Microbiology Biology

31 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 St James AR, Yavitt JB, Zinder SH, Richardson RE. Linking microbial Sphagnum degradation and acetate mineralization in acidic peat bogs: from global insights to a genome-centric case study. The Isme Journal. PMID 32951020 DOI: 10.1038/S41396-020-00782-0  0.358
2020 Tentori EF, Richardson RE. Methane Monooxygenase Transcripts as Quantitative Biomarkers of Methanotrophic Activity in . Applied and Environmental Microbiology. PMID 32948519 DOI: 10.1128/Aem.01048-20  0.338
2020 St James AR, Richardson RE. Ecogenomics reveals community interactions in a long-term methanogenic bioreactor and a rapid switch to sulfate reducing conditions. Fems Microbiology Ecology. PMID 32188966 DOI: 10.1093/Femsec/Fiaa050  0.336
2019 Brooks YM, Spirito CM, Bae JS, Hong A, Mosier EM, Sausele DJ, Fernandez-Baca CP, Epstein JL, Shapley DJ, Goodman LB, Anderson RR, Glaser AL, Richardson RE. Fecal indicator bacteria, fecal source tracking markers, and pathogens detected in two Hudson River tributaries. Water Research. 171: 115342. PMID 31841955 DOI: 10.1016/J.Watres.2019.115342  0.321
2019 Heavner GLW, Mansfeldt CB, Wilkins MJ, Nicora CD, Debs GE, Edwards EA, Richardson RE. Detection of Organohalide-Respiring Enzyme Biomarkers at a Bioaugmented TCE-Contaminated Field Site. Frontiers in Microbiology. 10: 1433. PMID 31316484 DOI: 10.3389/Fmicb.2019.01433  0.358
2018 Fernández-Baca CP, Omar AH, Pollard JT, Richardson RE. Microbial communities controlling methane and nutrient cycling in leach field soils. Water Research. 151: 456-467. PMID 30640159 DOI: 10.1016/J.Watres.2018.12.036  0.336
2018 Otwell AE, Callister SJ, Sherwood RW, Zhang S, Goldman AR, Smith RD, Richardson RE. Physiological and proteomic analyses of Fe(III)-reducing co-cultures of Desulfotomaculum reducens MI-1 and Geobacter sulfurreducens PCA. Geobiology. PMID 29905980 DOI: 10.1111/Gbi.12295  0.312
2018 Fernández-Baca CP, Truhlar AM, Omar AH, Rahm BG, Walter MT, Richardson RE. Methane and nitrous oxide cycling microbial communities in soils above septic leach fields: Abundances with depth and correlations with net surface emissions. The Science of the Total Environment. 640: 429-441. PMID 29860012 DOI: 10.1016/J.Scitotenv.2018.05.303  0.348
2018 Richter L, Mansfeldt CB, Kuan MM, Cesare A, Menefee ST, Richardson RE, Ahner BA. Altered Microbiome Leads to Significant Phenotypic and Transcriptomic Differences in a Lipid Accumulating Chlorophyte. Environmental Science & Technology. PMID 29750518 DOI: 10.1021/Acs.Est.7B06581  0.371
2016 Mansfeldt CB, Heavner GW, Rowe AR, Hayete B, Church BW, Richardson RE. Inferring Gene Networks for Strains of Dehalococcoides Highlights Conserved Relationships between Genes Encoding Core Catabolic and Cell-Wall Structural Proteins. Plos One. 11: e0166234. PMID 27829029 DOI: 10.1371/Journal.Pone.0166234  0.335
2016 Otwell AE, Callister SJ, Zink EM, Smith RD, Richardson RE. Comparative Proteomic Analysis of Desulfotomaculum reducens MI-1: Insights into the Metabolic Versatility of a Gram-Positive Sulfate- and Metal-Reducing Bacterium. Frontiers in Microbiology. 7: 191. PMID 26925055 DOI: 10.3389/Fmicb.2016.00191  0.329
2016 Mansfeldt CB, Richter LV, Ahner BA, Cochlan WP, Richardson RE. Use of De Novo Transcriptome Libraries to Characterize a Novel Oleaginous Marine Chlorella Species during the Accumulation of Triacylglycerols. Plos One. 11: e0147527. PMID 26840425 DOI: 10.1371/Journal.Pone.0147527  0.359
2015 Mansfeldt CB, Logsdon BA, Debs GE, Richardson RE. SPINE: SParse eIgengene NEtwork linking gene expression clusters in Dehalococcoides mccartyi to perturbations in experimental conditions. Plos One. 10: e0118404. PMID 25714365 DOI: 10.1371/Journal.Pone.0118404  0.322
2015 Rowe AR, Mansfeldt CB, Heavner GL, Richardson RE. Relating mRNA and protein biomarker levels in a Dehalococcoides and Methanospirillum-containing community. Applied Microbiology and Biotechnology. 99: 2313-27. PMID 25467924 DOI: 10.1007/S00253-014-6220-7  0.321
2015 Otwell AE, Sherwood RW, Zhang S, Nelson OD, Li Z, Lin H, Callister SJ, Richardson RE. Identification of proteins capable of metal reduction from the proteome of the Gram-positive bacterium Desulfotomaculum reducens MI-1 using an NADH-based activity assay. Environmental Microbiology. 17: 1977-90. PMID 25389064 DOI: 10.1111/1462-2920.12673  0.319
2014 Mansfeldt CB, Rowe AR, Heavner GL, Zinder SH, Richardson RE. Meta-analyses of Dehalococcoides mccartyi strain 195 transcriptomic profiles identify a respiration rate-related gene expression transition point and interoperon recruitment of a key oxidoreductase subunit. Applied and Environmental Microbiology. 80: 6062-72. PMID 25063656 DOI: 10.1128/Aem.02130-14  0.36
2013 Matturro B, Heavner GL, Richardson RE, Rossetti S. Quantitative estimation of Dehalococcoides mccartyi at laboratory and field scale: Comparative study between CARD-FISH and Real Time PCR Journal of Microbiological Methods. 93: 127-133. PMID 23511384 DOI: 10.1016/J.Mimet.2013.02.011  0.331
2013 Heavner GL, Rowe AR, Mansfeldt CB, Pan JK, Gossett JM, Richardson RE. Molecular biomarker-based biokinetic modeling of a PCE-dechlorinating and methanogenic mixed culture. Environmental Science & Technology. 47: 3724-33. PMID 23363057 DOI: 10.1021/Es303517S  0.389
2013 Rowe AR, Mansfeldt CB, Heavner GL, Richardson RE. Methanospirillum respiratory mRNA biomarkers correlate with hydrogenotrophic methanogenesis rate during growth and competition for hydrogen in an organochlorine-respiring mixed culture. Environmental Science & Technology. 47: 372-81. PMID 23153046 DOI: 10.1021/Es303061Y  0.348
2012 Hug LA, Beiko RG, Rowe AR, Richardson RE, Edwards EA. Comparative metagenomics of three Dehalococcoides-containing enrichment cultures: the role of the non-dechlorinating community. Bmc Genomics. 13: 327. PMID 22823523 DOI: 10.1186/1471-2164-13-327  0.395
2012 Rowe AR, Heavner GL, Mansfeldt CB, Werner JJ, Richardson RE. Relating chloroethene respiration rates in Dehalococcoides to protein and mRNA biomarkers. Environmental Science & Technology. 46: 9388-97. PMID 22812668 DOI: 10.1021/Es300996C  0.351
2009 Werner JJ, Ptak AC, Rahm BG, Zhang S, Richardson RE. Absolute quantification of Dehalococcoides proteins: enzyme bioindicators of chlorinated ethene dehalorespiration. Environmental Microbiology. 11: 2687-97. PMID 19650881 DOI: 10.1111/J.1462-2920.2009.01996.X  0.315
2008 Rowe AR, Lazar BJ, Morris RM, Richardson RE. Characterization of the community structure of a dechlorinating mixed culture and comparisons of gene expression in planktonic and biofloc-associated "Dehalococcoides" and Methanospirillum species. Applied and Environmental Microbiology. 74: 6709-19. PMID 18776027 DOI: 10.1128/Aem.00445-08  0.369
2008 Rahm BG, Richardson RE. Dehalococcoides' gene transcripts as quantitative bioindicators of tetrachloroethene, trichloroethene, and cis-1,2-dichloroethene dehalorespiration rates. Environmental Science & Technology. 42: 5099-105. PMID 18754354 DOI: 10.1021/Es702912T  0.346
2008 Rahm BG, Richardson RE. Correlation of respiratory gene expression levels and pseudo-steady-state PCE respiration rates in Dehalococcoides ethenogenes. Environmental Science & Technology. 42: 416-21. PMID 18284140 DOI: 10.1021/Es071455S  0.331
2007 Morris RM, Fung JM, Rahm BG, Zhang S, Freedman DL, Zinder SH, Richardson RE. Comparative proteomics of Dehalococcoides spp. reveals strain-specific peptides associated with activity Applied and Environmental Microbiology. 73: 320-326. PMID 17098919 DOI: 10.1128/Aem.02129-06  0.34
2007 Morris RM, Sowell S, Barofsky D, Zinder S, Richardson R. Transcription and mass-spectroscopic proteomic studies of electron transport oxidoreductases in Dehalococcoides ethenogenes. Environmental Microbiology. 8: 1499-509. PMID 16913910 DOI: 10.1111/J.1462-2920.2006.01090.X  0.363
2006 Rahm BG, Morris RM, Richardson RE. Temporal expression of respiratory genes in an enrichment culture containing Dehalococcoides ethenogenes. Applied and Environmental Microbiology. 72: 5486-91. PMID 16885302 DOI: 10.1128/Aem.00855-06  0.339
2005 Freeborn RA, West KA, Bhupathiraju VK, Chauhan S, Rahm BG, Richardson RE, Alvarez-Cohen L. Phylogenetic analysis of TCE-dechlorinating consortia enriched on a variety of electron donors. Environmental Science & Technology. 39: 8358-68. PMID 16294874 DOI: 10.1021/Es048003P  0.566
2002 Richardson RE, James CA, Bhupathiraju VK, Alvarez-Cohen L. Microbial activity in soils following steam treatment. Biodegradation. 13: 285-95. PMID 12521292 DOI: 10.1023/A:1021257026932  0.553
2002 Richardson RE, Bhupathiraju VK, Song DL, Goulet TA, Alvarez-Cohen L. Phylogenetic characterization of microbial communities that reductively dechlorinate TCE based upon a combination of molecular techniques. Environmental Science & Technology. 36: 2652-62. PMID 12099461 DOI: 10.1021/Es0157797  0.577
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