John Yin - Publications

University of Wisconsin, Madison, Madison, WI 
Chemical Engineering, Genetics, Microbiology Biology

76 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Baltes A, Akpinar F, Inankur B, Yin J. Inhibition of infection spread by co-transmitted defective interfering particles. Plos One. 12: e0184029. PMID 28915264 DOI: 10.1371/journal.pone.0184029  1
2017 Watters K, Inankur B, Gardiner JC, Warrick J, Sherer NM, Yin J, Palmenberg AC. Differential Disruption of Nucleocytoplasmic Trafficking Pathways by Rhinovirus 2A Proteases. Journal of Virology. PMID 28179529 DOI: 10.1128/JVI.02472-16  0.72
2016 Jin X, Jeon HM, Jin X, Kim EJ, Yin J, Jeon HY, Sohn YW, Oh SY, Kim JK, Kim SH, Jung JE, Kwak S, Tang KF, Xu Y, Rich JN, et al. The ID1-CULLIN3 Axis Regulates Intracellular SHH and WNT Signaling in Glioblastoma Stem Cells. Cell Reports. PMID 27477274 DOI: 10.1016/j.celrep.2016.06.092  0.64
2016 Yin J, Xu X, Song G, Han HS, Kim HW, Chen JD. Prokinetic Effects of a New 5-HT4 Agonist, YKP10811 on Gastric Motility in Dogs. Journal of Gastroenterology and Hepatology. PMID 27418395 DOI: 10.1111/jgh.13490  0.36
2016 Akpinar F, Inankur B, Yin J. Spatial-temporal patterns of viral amplification and interference initiated by a single infected cell. Journal of Virology. PMID 27279621 DOI: 10.1128/JVI.00807-16  1
2016 Voigt EA, Swick A, Yin J. Rapid induction and persistence of paracrine-induced cellular antiviral states arrest viral infection spread in A549 cells. Virology. 496: 59-66. PMID 27254596 DOI: 10.1016/j.virol.2016.05.019  1
2016 Lindsay SM, Yin J. Temperature gradients drive radial fluid flow in Petri dishes and multiwell plates. Aiche Journal. American Institute of Chemical Engineers. 62: 2227-2233. PMID 27158150 DOI: 10.1002/aic.15194  1
2016 Potts GK, Voigt EA, Bailey DJ, Rose CM, Westphall MS, Hebert AS, Yin J, Coon JJ. NEUCODE LABELS FOR MULTIPLEXED, ABSOLUTE PROTEIN QUANTIFICATION. Analytical Chemistry. PMID 26882330 DOI: 10.1021/acs.analchem.5b04773  1
2016 Warrick JW, Timm A, Swick A, Yin J. Tools for Single-Cell Kinetic Analysis of Virus-Host Interactions. Plos One. 11: e0145081. PMID 26752057 DOI: 10.1371/journal.pone.0145081  1
2016 Yin J, Park G, Kim TH, Hong JH, Kim YJ, Jin X, Kang S, Jung JE, Kim JY, Yun H, Lee JE, Kim M, Chung J, Kim H, Nakano I, et al. Correction: Pigment Epithelium-Derived Factor (PEDF) Expression Induced by EGFRvIII Promotes Self-renewal and Tumor Progression of Glioma Stem Cells. Plos Biology. 14: e1002367. PMID 26751204 DOI: 10.1371/journal.pbio.1002367  1
2015 Akpinar F, Timm A, Yin J. High-throughput single-cell kinetics of virus infections in the presence of defective interfering particles. Journal of Virology. PMID 26608322 DOI: 10.1128/JVI.02190-15  1
2015 Fu Q, Inankur B, Yin J, Striker R, Lan Q. Sterol Carrier Protein 2, a Critical Host Factor for Dengue Virus Infection, Alters the Cholesterol Distribution in Mosquito Aag2 Cells. Journal of Medical Entomology. 52: 1124-34. PMID 26336241 DOI: 10.1093/jme/tjv101  1
2015 Yin J, Park G, Lee JE, Choi EY, Park JY, Kim TH, Park N, Jin X, Jung JE, Shin D, Hong JH, Kim H, Yoo H, Lee SH, Kim YJ, et al. DEAD-box RNA helicase DDX23 modulates glioma malignancy via elevating miR-21 biogenesis. Brain : a Journal of Neurology. PMID 26121981 DOI: 10.1093/brain/awv167  0.8
2015 Yin J, Park G, Kim TH, Hong JH, Kim YJ, Jin X, Kang S, Jung JE, Kim JY, Yun H, Lee JE, Kim M, Chung J, Kim H, Nakano I, et al. Pigment Epithelium-Derived Factor (PEDF) Expression Induced by EGFRvIII Promotes Self-renewal and Tumor Progression of Glioma Stem Cells. Plos Biology. 13: e1002152. PMID 25992628 DOI: 10.1371/journal.pbio.1002152  0.8
2015 Voigt EA, Yin J. Kinetic Differences and Synergistic Antiviral Effects Between Type I and Type III Interferon Signaling Indicate Pathway Independence. Journal of Interferon & Cytokine Research : the Official Journal of the International Society For Interferon and Cytokine Research. PMID 25938799 DOI: 10.1089/jir.2015.0008  1
2015 Pesko K, Voigt EA, Swick A, Morley VJ, Timm C, Yin J, Turner PE. Genome rearrangement affects RNA virus adaptability on prostate cancer cells. Frontiers in Genetics. 6: 121. PMID 25883601 DOI: 10.3389/fgene.2015.00121  1
2015 Timm C, Gupta A, Yin J. Robust kinetics of an RNA virus: Transcription rates are set by genome levels. Biotechnology and Bioengineering. 112: 1655-62. PMID 25726926 DOI: 10.1002/bit.25578  1
2015 Kim SH, Kim EJ, Hitomi M, Oh SY, Jin X, Jeon HM, Beck S, Jin X, Kim JK, Park CG, Chang SY, Yin J, Kim T, Jeon YJ, Song J, et al. The LIM-only transcription factor LMO2 determines tumorigenic and angiogenic traits in glioma stem cells. Cell Death and Differentiation. PMID 25721045 DOI: 10.1038/cdd.2015.7  0.32
2015 Akpinar F, Yin J. Characterization of vesicular stomatitis virus populations by tunable resistive pulse sensing. Journal of Virological Methods. 218: 71-6. PMID 25698465 DOI: 10.1016/j.jviromet.2015.02.006  1
2015 Hu Y, Heo CH, Kim G, Jun EJ, Yin J, Kim HM, Yoon J. One-photon and two-photon sensing of biothiols using a bis-pyrene-Cu(II) ensemble and its application to image GSH in the cells and tissues. Analytical Chemistry. 87: 3308-13. PMID 25688569 DOI: 10.1021/ac504372w  0.6
2014 Kim JK, Jin X, Sohn YW, Jin X, Jeon HY, Kim EJ, Ham SW, Jeon HM, Chang SY, Oh SY, Yin J, Kim SH, Park JB, Nakano I, Kim H. Tumoral RANKL activates astrocytes that promote glioma cell invasion through cytokine signaling. Cancer Letters. 353: 194-200. PMID 25079688 DOI: 10.1016/j.canlet.2014.07.034  0.64
2014 Kim JK, Lee SY, Park CW, Park SH, Yin J, Kim J, Park JB, Lee JY, Kim H, Kim SC. Rab3a promotes brain tumor initiation and progression. Molecular Biology Reports. 41: 5903-11. PMID 24965146 DOI: 10.1007/s11033-014-3465-2  1
2014 Timm C, Akpinar F, Yin J. Quantitative characterization of defective virus emergence by deep sequencing. Journal of Virology. 88: 2623-32. PMID 24352442 DOI: 10.1128/JVI.02675-13  1
2014 Swick A, Baltes A, Yin J. Visualizing infection spread: dual-color fluorescent reporting of virus-host interactions. Biotechnology and Bioengineering. 111: 1200-9. PMID 24338628 DOI: 10.1002/bit.25170  0.6
2013 Voigt E, Inankur B, Baltes A, Yin J. A quantitative infection assay for human type I, II, and III interferon antiviral activities. Virology Journal. 10: 224. PMID 23829314 DOI: 10.1186/1743-422X-10-224  0.72
2013 Chao DT, Su M, Tanlimco S, Sho M, Choi D, Fox M, Ye S, Hsi ED, Durkin L, Yin J, Zhang Y, Kim H, Starling GC, Culp PA. Expression of TweakR in breast cancer and preclinical activity of enavatuzumab, a humanized anti-TweakR mAb. Journal of Cancer Research and Clinical Oncology. 139: 315-25. PMID 23073510 DOI: 10.1007/s00432-012-1332-x  1
2013 Jin X, Jin X, Sohn YW, Yin J, Kim SH, Joshi K, Nam DH, Nakano I, Kim H. Blockade of EGFR signaling promotes glioma stem-like cell invasiveness by abolishing ID3-mediated inhibition of p27(KIP1) and MMP3 expression. Cancer Letters. 328: 235-42. PMID 23022473 DOI: 10.1016/j.canlet.2012.09.005  1
2012 Jin X, Kim SH, Jeon HM, Beck S, Sohn YW, Yin J, Kim JK, Lim YC, Lee JH, Kim SH, Kang SH, Pian X, Song MS, Park JB, Chae YS, et al. Interferon regulatory factor 7 regulates glioma stem cells via interleukin-6 and Notch signalling. Brain : a Journal of Neurology. 135: 1055-69. PMID 22434214 DOI: 10.1093/brain/aws028  0.64
2012 Timm A, Yin J. Kinetics of virus production from single cells. Virology. 424: 11-7. PMID 22222212 DOI: 10.1016/j.virol.2011.12.005  0.56
2012 Lindsay SM, Timm A, Yin J. A quantitative comet infection assay for influenza virus. Journal of Virological Methods. 179: 351-8. PMID 22155578 DOI: 10.1016/j.jviromet.2011.11.022  1
2011 Jin X, Yin J, Kim SH, Sohn YW, Beck S, Lim YC, Nam DH, Choi YJ, Kim H. EGFR-AKT-Smad signaling promotes formation of glioma stem-like cells and tumor angiogenesis by ID3-driven cytokine induction. Cancer Research. 71: 7125-34. PMID 21975932 DOI: 10.1158/0008-5472.CAN-11-1330  1
2011 Beck S, Jin X, Yin J, Kim SH, Lee NK, Oh SY, Jin X, Kim MK, Kim EB, Son JS, Kim SC, Nam DH, Kim SH, Kang SK, Kim H, et al. Identification of a peptide that interacts with Nestin protein expressed in brain cancer stem cells. Biomaterials. 32: 8518-28. PMID 21880363 DOI: 10.1016/j.biomaterials.2011.07.048  0.64
2011 Yin J, Garen CR, Bateman K, Yu M, Lyon EZ, Habel J, Kim H, Hung LW, Kim CY, James MN. Expression, purification and preliminary crystallographic analysis of O-acetylhomoserine sulfhydrylase from Mycobacterium tuberculosis. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 67: 959-63. PMID 21821905 DOI: 10.1107/S1744309111017611  1
2011 Yin J, Kim JK, Moon JH, Beck S, Piao D, Jin X, Kim SH, Lim YC, Nam DH, You S, Kim H, Choi YJ. hMSC-mediated concurrent delivery of endostatin and carboxylesterase to mouse xenografts suppresses glioma initiation and recurrence. Molecular Therapy : the Journal of the American Society of Gene Therapy. 19: 1161-9. PMID 21386822 DOI: 10.1038/mt.2011.28  0.64
2011 Colantonio A, Gerber G, Bayley M, Deber R, Yin J, Kim H. Differential profiles for patients with traumatic and non-traumatic brain injury. Journal of Rehabilitation Medicine. 43: 311-5. PMID 21347507 DOI: 10.2340/16501977-0783  1
2011 Beck S, Jin X, Sohn YW, Kim JK, Kim SH, Yin J, Pian X, Kim SC, Nam DH, Choi YJ, Kim H. Telomerase activity-independent function of TERT allows glioma cells to attain cancer stem cell characteristics by inducing EGFR expression. Molecules and Cells. 31: 9-15. PMID 21193962 DOI: 10.1007/s10059-011-0008-8  1
2010 Colantonio A, Gerber G, Bayley M, Deber R, Kim H, Yin J. Who waits for inpatient rehabilitation services in Canada after neurotrauma? A population based-study. Journal of Rehabilitation Medicine. 42: 773-9. PMID 20809060 DOI: 10.2340/16501977-0582  1
2010 Jin X, Beck S, Sohn YW, Kim JK, Kim SH, Yin J, Pian X, Kim SC, Choi YJ, Kim H. Human telomerase catalytic subunit (hTERT) suppresses p53-mediated anti-apoptotic response via induction of basic fibroblast growth factor. Experimental & Molecular Medicine. 42: 574-82. PMID 20628269 DOI: 10.3858/emm.2010.42.8.058  1
2010 Yin J, Jin X, Beck S, Kang DH, Hong Z, Li Z, Jin Y, Zhang Q, Choi YJ, Kim SC, Kim H. In vitro myogenic and adipogenic differentiation model of genetically engineered bovine embryonic fibroblast cell lines. Biotechnology Letters. 32: 195-202. PMID 19834648 DOI: 10.1007/s10529-009-0142-y  1
2009 Anekal SG, Zhu Y, Graham MD, Yin J. Dynamics of virus spread in the presence of fluid flow. Integrative Biology : Quantitative Biosciences From Nano to Macro. 1: 664-71. PMID 20027375 DOI: 10.1039/b908197f  1
2009 Hensel SC, Rawlings JB, Yin J. Stochastic kinetic modeling of vesicular stomatitis virus intracellular growth. Bulletin of Mathematical Biology. 71: 1671-92. PMID 19459014 DOI: 10.1007/s11538-009-9419-5  1
2009 Stauffer Thompson KA, Rempala GA, Yin J. Multiple-hit inhibition of infection by defective interfering particles. The Journal of General Virology. 90: 888-99. PMID 19264636 DOI: 10.1099/vir.0.005249-0  1
2009 Lim KI, Yin J. Computational fitness landscape for all gene-order permutations of an RNA virus. Plos Computational Biology. 5: e1000283. PMID 19197345 DOI: 10.1371/journal.pcbi.1000283  0.96
2009 Zhu Y, Warrick JW, Haubert K, Beebe DJ, Yin J. Infection on a chip: a microscale platform for simple and sensitive cell-based virus assays. Biomedical Microdevices. 11: 565-70. PMID 19142734 DOI: 10.1007/s10544-008-9263-7  1
2009 Zhu Y, Yongky A, Yin J. Growth of an RNA virus in single cells reveals a broad fitness distribution. Virology. 385: 39-46. PMID 19070881 DOI: 10.1016/j.virol.2008.10.031  1
2008 Haseltine EL, Yin J, Rawlings JB. Implications of decoupling the intracellular and extracellular levels in multi-level models of virus growth. Biotechnology and Bioengineering. 101: 811-20. PMID 18512261 DOI: 10.1002/bit.21931  1
2008 Haseltine EL, Lam V, Yin J, Rawlings JB. Image-guided modeling of virus growth and spread. Bulletin of Mathematical Biology. 70: 1730-48. PMID 18437499 DOI: 10.1007/s11538-008-9316-3  1
2007 Jin X, Kim JG, Oh MJ, Oh HY, Sohn YW, Pian X, Yin JL, Beck S, Lee N, Son J, Kim H, Yan C, Wang JH, Choi YJ, Whang KY. Opposite roles of MRF4 and MyoD in cell proliferation and myogenic differentiation. Biochemical and Biophysical Research Communications. 364: 476-82. PMID 17959144 DOI: 10.1016/j.bbrc.2007.10.042  1
2007 Agosto MA, Middleton JK, Freimont EC, Yin J, Nibert ML. Thermolabilizing pseudoreversions in reovirus outer-capsid protein micro 1 rescue the entry defect conferred by a thermostabilizing mutation. Journal of Virology. 81: 7400-9. PMID 17507494 DOI: 10.1128/JVI.02720-06  1
2007 Cho NH, Kim HR, Lee JH, Kim SY, Kim J, Cha S, Kim SY, Darby AC, Fuxelius HH, Yin J, Kim JH, Kim J, Lee SJ, Koh YS, Jang WJ, et al. The Orientia tsutsugamushi genome reveals massive proliferation of conjugative type IV secretion system and host-cell interaction genes. Proceedings of the National Academy of Sciences of the United States of America. 104: 7981-6. PMID 17483455 DOI: 10.1073/pnas.0611553104  0.92
2007 Suthers PF, Gourse RL, Yin J. Rapid responses of ribosomal RNA synthesis to nutrient shifts. Biotechnology and Bioengineering. 97: 1230-45. PMID 17216653 DOI: 10.1002/bit.21318  1
2007 Middleton JK, Agosto MA, Severson TF, Yin J, Nibert ML. Thermostabilizing mutations in reovirus outer-capsid protein mu1 selected by heat inactivation of infectious subvirion particles. Virology. 361: 412-25. PMID 17208266 DOI: 10.1016/j.virol.2006.11.024  1
2007 Yin J. Chemical engineering and virology: Challenges and opportunities at the interface Aiche Journal. 53: 2202-2209. DOI: 10.1002/aic.11263  1
2006 Lim KI, Lang T, Lam V, Yin J. Model-based design of growth-attenuated viruses. Plos Computational Biology. 2: e116. PMID 16948530 DOI: 10.1371/journal.pcbi.0020116  1
2006 Lam V, Boehme KW, Compton T, Yin J. Spatial patterns of protein expression in focal infections of human cytomegalovirus. Biotechnology and Bioengineering. 93: 1029-39. PMID 16506244 DOI: 10.1002/bit.20786  1
2006 Lim KI, Yin J. Dynamic tradeoffs in the raft-mediated entry of human immunodeficiency virus type 1 into cells. Biotechnology and Bioengineering. 93: 246-57. PMID 16136590 DOI: 10.1002/bit.20680  0.96
2005 Kim H, Yin J. Effects of RNA splicing and post-transcriptional regulation on HIV-1 growth: a quantitative and integrated perspective. Systems Biology. 152: 138-52. PMID 16986277  1
2005 Kim H, Yin J. Robust growth of human immunodeficiency virus type 1 (HIV-1). Biophysical Journal. 89: 2210-21. PMID 16055539 DOI: 10.1529/biophysj.104.058438  1
2005 Kim H, Yin J. In silico mutagenesis of RNA splicing in HIV-1. Biotechnology and Bioengineering. 91: 877-93. PMID 15937951 DOI: 10.1002/bit.20560  1
2005 Endler EE, Nealey PF, Yin J. Fidelity of micropatterned cell cultures. Journal of Biomedical Materials Research. Part A. 74: 92-103. PMID 15920741 DOI: 10.1002/jbm.a.30319  0.36
2005 Lam V, Duca KA, Yin J. Arrested spread of vesicular stomatitis virus infections in vitro depends on interferon-mediated antiviral activity. Biotechnology and Bioengineering. 90: 793-804. PMID 15834946 DOI: 10.1002/bit.20467  1
2005 Lim KI, Yin J. Localization of receptors in lipid rafts can inhibit signal transduction. Biotechnology and Bioengineering. 90: 694-702. PMID 15803466 DOI: 10.1002/bit.20464  0.96
2004 Kim H, Yin J. Energy-efficient growth of phage Q Beta in Escherichia coli. Biotechnology and Bioengineering. 88: 148-56. PMID 15449299 DOI: 10.1002/bit.20226  1
2004 Yin J. Genome function--a virus-world view. Advances in Experimental Medicine and Biology. 547: 31-46. PMID 15230091  1
2004 Lim KI, Narayan S, Young JA, Yin J. Effects of lipid rafts on dynamics of retroviral entry and trafficking: Quantitative analysis. Biotechnology and Bioengineering. 86: 650-60. PMID 15137076 DOI: 10.1002/bit.20108  1
2004 Kim H, Yin J. Quantitative analysis of a parasitic antiviral strategy. Antimicrobial Agents and Chemotherapy. 48: 1017-20. PMID 14982798  1
2003 You L, Hoonlor A, Yin J. Modeling biological systems using Dynetica--a simulator of dynamic networks. Bioinformatics (Oxford, England). 19: 435-6. PMID 12584138 DOI: 10.1093/bioinformatics/btg009  1
2003 Endler EE, Duca KA, Nealey PF, Whitesides GM, Yin J. Propagation of viruses on micropatterned host cells. Biotechnology and Bioengineering. 81: 719-25. PMID 12529886 DOI: 10.1002/bit.10516  0.6
2002 You L, Yin J. Dependence of epistasis on environment and mutation severity as revealed by in silico mutagenesis of phage t7. Genetics. 160: 1273-81. PMID 11973286  1
2002 You L, Suthers PF, Yin J. Effects of Escherichia coli physiology on growth of phage T7 in vivo and in silico. Journal of Bacteriology. 184: 1888-94. PMID 11889095 DOI: 10.1128/JB.184.7.1888-1894.2002  1
2002 Middleton JK, Severson TF, Chandran K, Gillian AL, Yin J, Nibert ML. Thermostability of reovirus disassembly intermediates (ISVPs) correlates with genetic, biochemical, and thermodynamic properties of major surface protein mu1. Journal of Virology. 76: 1051-61. PMID 11773381  1
2001 Duca KA, Lam V, Keren I, Endler EE, Letchworth GJ, Novella IS, Yin J. Quantifying viral propagation in vitro: toward a method for characterization of complex phenotypes. Biotechnology Progress. 17: 1156-65. PMID 11735454 DOI: 10.1021/bp010115m  0.84
1999 Yin J. Bio-informatics - A chemical engineering frontier? Chemical Engineering Progress. 95: 65-74.  1
1994 Yin J. Spatially resolved evolution of viruses Annals of the New York Academy of Sciences. 745: 399-408. PMID 7832527  1
1993 Yin J. Evolution of bacteriophage T7 in a growing plaque Journal of Bacteriology. 175: 1272-1277. PMID 8444789  1
1991 Yin J. A quantifiable phenotype of viral propagation Biochemical and Biophysical Research Communications. 174: 1009-1014. PMID 1993042 DOI: 10.1016/0006-291X(91)91519-I  1
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