Steve D. Hanes - Related publications

Affiliations: 
State University of New York, Albany, Albany, NY, United States 
Area:
Public Health, Genetics, Microbiology Biology
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Arribere JA, Kuroyanagi H, Hundley HA. mRNA Editing, Processing and Quality Control in . Genetics. 215: 531-568. PMID 32632025 DOI: 10.1534/genetics.119.301807   
2020 Fliedner A, Kirchner P, Wiesener A, van de Beek I, Waisfisz Q, van Haelst M, Scott DA, Lalani SR, Rosenfeld JA, Azamian MS, Xia F, Dutra-Clarke M, Martinez-Agosto JA, Lee H, , et al. Variants in SCAF4 Cause a Neurodevelopmental Disorder and Are Associated with Impaired mRNA Processing. American Journal of Human Genetics. PMID 32730804 DOI: 10.1016/j.ajhg.2020.06.019   
2020 Chaparian RR, van Kessel JC. Promoter Pull-Down Assay: A Biochemical Screen for DNA-Binding Proteins. Methods in Molecular Biology (Clifton, N.J.). PMID 32803537 DOI: 10.1007/7651_2020_307   
2020 Criscuolo S, Gatti Iou M, Merolla A, Maragliano L, Cesca F, Benfenati F. Engineering REST-specific synthetic PUF proteins to control neuronal gene expression: a combined experimental and computational study. Acs Synthetic Biology. PMID 32678979 DOI: 10.1021/acssynbio.0c00119   
2020 Rambout X, Maquat LE. The nuclear cap-binding complex as choreographer of gene transcription and pre-mRNA processing. Genes & Development. 34: 1113-1127. PMID 32873578 DOI: 10.1101/gad.339986.120   
2020 Castañeda AF, Didychuk AL, Louder RK, McCollum CO, Davis ZH, Nogales E, Glaunsinger BA. The gammaherpesviral TATA-box-binding protein directly interacts with the CTD of host RNA Pol II to direct late gene transcription. Plos Pathogens. 16: e1008843. PMID 32886723 DOI: 10.1371/journal.ppat.1008843   
2020 Slobodin B, Dikstein R. So close, no matter how far: multiple paths connecting transcription to mRNA translation in eukaryotes. Embo Reports. e50799. PMID 32803873 DOI: 10.15252/embr.202050799   
2020 Tian Y, Zeng Z, Li X, Wang Y, Chen R, Mattijssen S, Gaidamakov S, Wu Y, Maraia RJ, Peng W, Zhu J. Transcriptome-wide stability analysis uncovers LARP4-mediated NFκB1 mRNA stabilization during T cell activation. Nucleic Acids Research. PMID 32735645 DOI: 10.1093/nar/gkaa643   
2020 Bergen V, Lange M, Peidli S, Wolf FA, Theis FJ. Generalizing RNA velocity to transient cell states through dynamical modeling. Nature Biotechnology. PMID 32747759 DOI: 10.1038/s41587-020-0591-3   
2020 Sala L, Chandrasekhar S, Vidigal JA. AGO unchained: Canonical and non-canonical roles of Argonaute proteins in mammals. Frontiers in Bioscience (Landmark Edition). 25: 1-42. PMID 31585876   
2020 Carter H. Loss of RNA-Binding Protein RBMS1 Promotes a Metastatic Transcriptional Program in Colorectal Cancer. Cancer Discovery. 10: 1261-1262. PMID 32873619 DOI: 10.1158/2159-8290.CD-20-0993   
2020 Huggins HP, Keiper BD. Regulation of Germ Cell mRNPs by eIF4E:4EIP Complexes: Multiple Mechanisms, One Goal. Frontiers in Cell and Developmental Biology. 8: 562. PMID 32733883 DOI: 10.3389/fcell.2020.00562   
2020 Zhang KL, Feng Z, Yang JF, Yang F, Yuan T, Zhang D, Hao GF, Fang YM, Zhang J, Wu C, Chen MX, Zhu FY. Systematic characterization of the branch point binding protein, splicing factor 1, gene family in plant development and stress responses. Bmc Plant Biology. 20: 379. PMID 32811430 DOI: 10.1186/s12870-020-02570-6   
2020 Luo EC, Nathanson JL, Tan FE, Schwartz JL, Schmok JC, Shankar A, Markmiller S, Yee BA, Sathe S, Pratt GA, Scaletta DB, Ha Y, Hill DE, Aigner S, Yeo GW. Large-scale tethered function assays identify factors that regulate mRNA stability and translation. Nature Structural & Molecular Biology. PMID 32807991 DOI: 10.1038/s41594-020-0477-6   
2020 Chen G, Wang D, Wu B, Yan F, Xue H, Wang Q, Quan S, Chen Y. Taf14 recognizes a common motif in transcriptional machineries and facilitates their clustering by phase separation. Nature Communications. 11: 4206. PMID 32826896 DOI: 10.1038/s41467-020-18021-7   
2020 Pandey M, Stormo GD, Dutcher SK. Alternative Splicing During the Cell Cycle. G3 (Bethesda, Md.). PMID 32817123 DOI: 10.1534/g3.120.401622   
2020 Duffraisse M, Paul R, Carnesecchi J, Hudry B, Banreti A, Reboulet J, Ajuria L, Lohmann I, Merabet S. Role of a versatile peptide motif controlling Hox nuclear export and autophagy in the fat body. Journal of Cell Science. PMID 32878938 DOI: 10.1242/jcs.241943   
2020 Jaiswal A, Singh AK, Tamrakar A, Kodgire P. Unfolding the Role of Splicing Factors and RNA Debranching in AID Mediated Antibody Diversification. International Reviews of Immunology. 1-18. PMID 32924658 DOI: 10.1080/08830185.2020.1815725   
2020 Longenecker JZ, Gilbert CJ, Golubeva VA, Martens CR, Accornero F. Epitranscriptomics in the Heart: a Focus on mA. Current Heart Failure Reports. PMID 32813261 DOI: 10.1007/s11897-020-00473-z   
2020 Ahmed M, Min DS, Kim DR. Integrating binding and expression data to predict transcription factors combined function. Bmc Genomics. 21: 610. PMID 32894066 DOI: 10.1186/s12864-020-06977-1   
2020 López García de Lomana A, Kusebauch U, Raman AV, Pan M, Turkarslan S, Lorenzetti APR, Moritz RL, Baliga NS. Selective Translation of Low Abundance and Upregulated Transcripts in Halobacterium salinarum. Msystems. 5. PMID 32723790 DOI: 10.1128/mSystems.00329-20   
2020 Gupta A, Shrivastava D, Kumar Shakya A, Gupta K, Pratap JV, Habib S. PfKsgA1 functions as a transcription initiation factor and interacts with the N-terminal region of the mitochondrial RNA polymerase of Plasmodium falciparum. International Journal For Parasitology. PMID 32896572 DOI: 10.1016/j.ijpara.2020.07.010   
2020 Zhang M, Zhai Y, Zhang S, Dai X, Li Z. Roles of N6-Methyladenosine (mA) in Stem Cell Fate Decisions and Early Embryonic Development in Mammals. Frontiers in Cell and Developmental Biology. 8: 782. PMID 32850871 DOI: 10.3389/fcell.2020.00782   
2020 Chikashige Y, Kato H, Thornton M, Pepper W, Hilgers M, Cecil A, Asano I, Yamada H, Mori C, Brunkow C, Moravek C, Urano T, Singh CR, Asano K. Gcn2 eIF2α kinase mediates combinatorial translational regulation through nucleotide motifs and uORFs in target mRNAs. Nucleic Acids Research. PMID 32710633 DOI: 10.1093/nar/gkaa608   
2020 Yue L, Li J, Zhang B, Qi L, Li Z, Zhao F, Li L, Zheng X, Dong X. The conserved ribonuclease aCPSF1 triggers genome-wide transcription termination of Archaea via a 3'-end cleavage mode. Nucleic Acids Research. PMID 32857850 DOI: 10.1093/nar/gkaa702   
2020 Yue L, Li J, Zhang B, Qi L, Li Z, Zhao F, Li L, Zheng X, Dong X. The conserved ribonuclease aCPSF1 triggers genome-wide transcription termination of Archaea via a 3'-end cleavage mode. Nucleic Acids Research. PMID 32857850 DOI: 10.1093/nar/gkaa702   
2020 Zhou F, Teng X, Wang P, Zhang Y, Miao Y. Isolation, identification, expression and subcellular localization of PPARG gene in buffalo mammary gland. Gene. 144981. PMID 32707300 DOI: 10.1016/j.gene.2020.144981   
2020 Brown S, Gauvin CC, Charbonneau AA, Burman N, Lawrence CM. Csx3 is a cyclic oligonucleotide phosphodiesterase associated with type-III CRISPR-Cas that degrades the second messenger cA4. The Journal of Biological Chemistry. PMID 32826317 DOI: 10.1074/jbc.RA120.014099   
2020 Zhu Y, Wu W, Shao W, Chen J, Shi X, Ma X, Xu YZ, Huang W, Huang J. SPLICING FACTOR1 is Important in Chloroplast Development under Cold Stress. Plant Physiology. PMID 32732348 DOI: 10.1104/pp.20.00706   
2020 Feiz L, Strickler SR, van Eck J, Mao L, Movahed N, Taylor C, Gourabathini P, Fei Z, Stern DB. Setaria viridis chlorotic and seedling-lethal mutants define critical functions for chloroplast gene expression. The Plant Journal : For Cell and Molecular Biology. PMID 32812296 DOI: 10.1111/tpj.14968   
2020 Badreldin AA, Bagheri L, Zhang B, Noelle Larson A, van Wijnen AJ. Relative mRNA and Protein Stability of Epigenetic Regulators in Musculoskeletal Cell Culture Models. Gene. 145032. PMID 32771387 DOI: 10.1016/j.gene.2020.145032   
2020 Chouaib R, Safieddine A, Pichon X, Imbert A, Kwon OS, Samacoits A, Traboulsi AM, Robert MC, Tsanov N, Coleno E, Poser I, Zimmer C, Hyman A, Le Hir H, Zibara K, et al. A Dual Protein-mRNA Localization Screen Reveals Compartmentalized Translation and Widespread Co-translational RNA Targeting. Developmental Cell. PMID 32783880 DOI: 10.1016/j.devcel.2020.07.010   
2020 Zhen D, Wu Y, Zhang Y, Chen K, Song B, Xu H, Tang Y, Wei Z, Meng J. mA Reader: Epitranscriptome Target Prediction and Functional Characterization of -Methyladenosine (mA) Readers. Frontiers in Cell and Developmental Biology. 8: 741. PMID 32850851 DOI: 10.3389/fcell.2020.00741   
2020 Buccitelli C, Selbach M. mRNAs, proteins and the emerging principles of gene expression control. Nature Reviews. Genetics. PMID 32709985 DOI: 10.1038/s41576-020-0258-4   
2020 Tzani I, Monger C, Motheramgari K, Gallagher C, Hagan R, Kelly P, Costello A, Meiller J, Floris P, Zhang L, Clynes M, Bones J, Barron N, Clarke C. Subphysiological temperature induces pervasive alternative splicing in Chinese hamster ovary cells. Biotechnology and Bioengineering. 117: 2489-2503. PMID 32346860 DOI: 10.1002/bit.27365   
2020 Kegelman CD, Collins JM, Nijsure MP, Eastburn EA, Boerckel JD. Gone Caving: Roles of the Transcriptional Regulators YAP and TAZ in Skeletal Development. Current Osteoporosis Reports. PMID 32712794 DOI: 10.1007/s11914-020-00605-3   
2020 Gegenfurtner K, Flenkenthaler F, Fröhlich T, Wolf E, Arnold GJ. The impact of transcription inhibition during in vitro maturation on the proteome of bovine oocytes. Biology of Reproduction. PMID 32856698 DOI: 10.1093/biolre/ioaa149   
2020 Ghosh S, Guimaraes JC, Lanzafame M, Schmidt A, Syed AP, Dimitriades B, Börsch A, Ghosh S, Mittal N, Montavon T, Correia AL, Danner J, Meister G, Terracciano LM, Pfeffer S, et al. Prevention of dsRNA-induced interferon signaling by AGO1x is linked to breast cancer cell proliferation. The Embo Journal. e103922. PMID 32812257 DOI: 10.15252/embj.2019103922   
2020 Smith SJ, Towers N, Demetriou K, Mohun TJ. Defective heart chamber growth and myofibrillogenesis after knockout of adprhl1 gene function by targeted disruption of the ancestral catalytic active site. Plos One. 15: e0235433. PMID 32726316 DOI: 10.1371/journal.pone.0235433   
2020 Kato K, Ohno S, Sonoda K, Fukuyama M, Makiyama T, Ozawa T, Horie M. Missense Mutation Causes Nonsense-mediated mRNA Decay and Severe Dilated Cardiomyopathy. Circulation. Genomic and Precision Medicine. PMID 32818388 DOI: 10.1161/CIRCGEN.119.002853   
2020 Serdar LD, Whiteside DL, Nock SL, McGrath D, Baker KE. Inhibition of post-termination ribosome recycling at premature termination codons in UPF1 ATPase mutants. Elife. 9. PMID 32697194 DOI: 10.7554/eLife.57834   
2020 Zhang J, Liu J, Lee D, Feng JJ, Lochovsky L, Lou S, Rutenberg-Schoenberg M, Gerstein M. RADAR: annotation and prioritization of variants in the post-transcriptional regulome of RNA-binding proteins. Genome Biology. 21: 151. PMID 32727537 DOI: 10.1186/s13059-020-01979-4   
2020 McLellan H, Chen K, He Q, Wu X, Boevink PC, Tian Z, Birch PRJ. The Ubiquitin E3 Ligase PUB17 Positively Regulates Immunity by Targeting a Negative Regulator, KH17, for Degradation. Plant Communications. 1: 100020. PMID 32715295 DOI: 10.1016/j.xplc.2020.100020   
2020 Ahmed JN, Diamand KEM, Bellchambers HM, Arkell RM. Systematized reporter assays reveal ZIC protein regulatory abilities are Subclass-specific and dependent upon transcription factor binding site context. Scientific Reports. 10: 13130. PMID 32753700 DOI: 10.1038/s41598-020-69917-9   
2020 Liao Q, Chen L, Zhang N, Xi Y, Hu S, Ng DM, Ahmed FYH, Zhao G, Fan X, Xie Y, Dai X, Jin Y, Ge J, Dong C, Zhang X, et al. Network analysis of targets showing the potential oncogenic role of in colorectal cancer. Cancer Cell International. 20: 439. PMID 32943987 DOI: 10.1186/s12935-020-01527-x   
2020 Muzafar S, Sharma RD, Shah AH, Gaur NA, Dasgupta U, Chauhan N, Prasad R. Identification of Genomewide Alternative Splicing Events in Sequential, Isogenic Clinical Isolates of Candida albicans Reveals a Novel Mechanism of Drug Resistance and Tolerance to Cellular Stresses. Msphere. 5. PMID 32817456 DOI: 10.1128/mSphere.00608-20   
2020 Zhai Q, Deng L, Li C. Mediator subunit MED25: at the nexus of jasmonate signaling. Current Opinion in Plant Biology. 57: 78-86. PMID 32777679 DOI: 10.1016/j.pbi.2020.06.006   
2020 Zhai Q, Deng L, Li C. Mediator subunit MED25: at the nexus of jasmonate signaling. Current Opinion in Plant Biology. 57: 78-86. PMID 32777679 DOI: 10.1016/j.pbi.2020.06.006   
2020 Beckett L, Xie S, Thimmapuram J, Tucker HA, Donkin SS, Casey T. Mammary transcriptome reveals cell maintenance and protein turnover support milk synthesis in early lactation cows. Physiological Genomics. PMID 32744883 DOI: 10.1152/physiolgenomics.00046.2020   
2020 Yang YZ, Ding S, Liu XY, Tang JJ, Wang Y, Sun F, Xu C, Tan BC. EMP32 is required for the -splicing of intron 2 and seed development in maize. Rna Biology. 1-11. PMID 32936708 DOI: 10.1080/15476286.2020.1817267