Patrick F. Suthers, Ph.D. - Publications

Affiliations: 
2005 University of Wisconsin, Madison, Madison, WI 
Area:
Chemical Engineering

19 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2012 Zomorrodi AR, Suthers PF, Ranganathan S, Maranas CD. Mathematical optimization applications in metabolic networks. Metabolic Engineering. 14: 672-86. PMID 23026121 DOI: 10.1016/j.ymben.2012.09.005  0.48
2012 Suthers PF, Maranas CD. Orchestrating hi-fi annotations. Nature Chemical Biology. 8: 810-1. PMID 22987007 DOI: 10.1038/nchembio.1067  0.48
2012 Kumar A, Suthers PF, Maranas CD. MetRxn: a knowledgebase of metabolites and reactions spanning metabolic models and databases. Bmc Bioinformatics. 13: 6. PMID 22233419 DOI: 10.1186/1471-2105-13-6  0.48
2011 Saha R, Suthers PF, Maranas CD. Zea mays iRS1563: a comprehensive genome-scale metabolic reconstruction of maize metabolism. Plos One. 6: e21784. PMID 21755001 DOI: 10.1371/journal.pone.0021784  0.48
2011 Ravikirthi P, Suthers PF, Maranas CD. Construction of an E. Coli genome-scale atom mapping model for MFA calculations. Biotechnology and Bioengineering. 108: 1372-82. PMID 21328316 DOI: 10.1002/bit.23070  0.48
2010 Ranganathan S, Suthers PF, Maranas CD. OptForce: an optimization procedure for identifying all genetic manipulations leading to targeted overproductions. Plos Computational Biology. 6: e1000744. PMID 20419153 DOI: 10.1371/journal.pcbi.1000744  0.48
2010 Suthers PF, Chang YJ, Maranas CD. Improved computational performance of MFA using elementary metabolite units and flux coupling. Metabolic Engineering. 12: 123-8. PMID 19837183 DOI: 10.1016/j.ymben.2009.10.002  0.48
2009 Suthers PF, Zomorrodi A, Maranas CD. Genome-scale gene/reaction essentiality and synthetic lethality analysis. Molecular Systems Biology. 5: 301. PMID 19690570 DOI: 10.1038/msb.2009.56  0.48
2009 AbuOun M, Suthers PF, Jones GI, Carter BR, Saunders MP, Maranas CD, Woodward MJ, Anjum MF. Genome scale reconstruction of a Salmonella metabolic model: comparison of similarity and differences with a commensal Escherichia coli strain. The Journal of Biological Chemistry. 284: 29480-8. PMID 19690172 DOI: 10.1074/jbc.M109.005868  0.48
2009 Suthers PF, Dasika MS, Kumar VS, Denisov G, Glass JI, Maranas CD. A genome-scale metabolic reconstruction of Mycoplasma genitalium, iPS189. Plos Computational Biology. 5: e1000285. PMID 19214212 DOI: 10.1371/journal.pcbi.1000285  0.48
2009 Suthers PF, Kumar VS, Zomorrodi A, Ranganathan S, Maranas CD. Using systems engineering to reconstruct, analyze And redesign metabolism Computer Aided Chemical Engineering. 27: 113-115. DOI: 10.1016/S1570-7946(09)70239-1  0.48
2008 Chang Y, Suthers PF, Maranas CD. Identification of optimal measurement sets for complete flux elucidation in metabolic flux analysis experiments. Biotechnology and Bioengineering. 100: 1039-49. PMID 18553391 DOI: 10.1002/bit.21926  0.48
2008 Suthers PF. Genome-scale model of a minimal organism: Mycoplasma genitalium Aiche Annual Meeting, Conference Proceedings 0.48
2008 Chang YJ, Suthers PF, Maranas CD. Identification of optimal measurement sets for isotopically non-stationary mfa experiments Aiche Annual Meeting, Conference Proceedings 0.48
2008 Chang YJ, Suthers PF, Maranas CD. Complete flux elucidation using metabolic flux analysis Aiche Annual Meeting, Conference Proceedings 0.48
2007 Suthers PF, Burgard AP, Dasika MS, Nowroozi F, Van Dien S, Keasling JD, Maranas CD. Metabolic flux elucidation for large-scale models using 13C labeled isotopes. Metabolic Engineering. 9: 387-405. PMID 17632026 DOI: 10.1016/j.ymben.2007.05.005  0.48
2007 Suthers PF, Gourse RL, Yin J. Rapid responses of ribosomal RNA synthesis to nutrient shifts. Biotechnology and Bioengineering. 97: 1230-45. PMID 17216653 DOI: 10.1002/bit.21318  0.48
2005 Suthers PF, Chelf P. 3-Hydroxypropionic acid from glycerol Industrial Bioprocessing. 27: 3-4.  0.48
2002 You L, Suthers PF, Yin J. Effects of Escherichia coli physiology on growth of phage T7 in vivo and in silico. Journal of Bacteriology. 184: 1888-94. PMID 11889095 DOI: 10.1128/JB.184.7.1888-1894.2002  0.48
Show low-probability matches.