Arnold J. Berk - Publications

University of California, Los Angeles, Los Angeles, CA 
Microbiology Biology

140 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Zemke NR, Gou D, Berk AJ. Dedifferentiation by adenovirus E1A due to inactivation of Hippo pathway effectors YAP and TAZ. Genes & Development. PMID 31171701 DOI: 10.1101/gad.324814.119  0.32
2019 Ando H, Sato T, Ito T, Yamamoto J, Sakamoto S, Nitta N, Asatsuma-Okumura T, Shimizu N, Mizushima R, Aoki I, Imai T, Yamaguchi Y, Berk AJ, Handa H. Cereblon Control of Zebrafish Brain Size by Regulation of Neural Stem Cell Proliferation. Iscience. 15: 95-108. PMID 31055217 DOI: 10.1016/j.isci.2019.04.007  0.36
2018 Hsu E, Pennella MA, Zemke NR, Eng C, Berk AJ. Adenovirus E1A Activation Domain Regulates H3 Acetylation Affecting Varied Steps in Transcription at Different Viral Promoters. Journal of Virology. PMID 29976669 DOI: 10.1128/JVI.00805-18  0.68
2017 Zemke NR, Berk AJ. The Adenovirus E1A C Terminus Suppresses a Delayed Antiviral Response and Modulates RAS Signaling. Cell Host & Microbe. 22: 789-800.e5. PMID 29241042 DOI: 10.1016/j.chom.2017.11.008  0.32
2014 Ferrari R, Gou D, Jawdekar G, Johnson SA, Nava M, Su T, Yousef AF, Zemke NR, Pellegrini M, Kurdistani SK, Berk AJ. Adenovirus small E1A employs the lysine acetylases p300/CBP and tumor suppressor Rb to repress select host genes and promote productive virus infection. Cell Host & Microbe. 16: 663-76. PMID 25525796 DOI: 10.1016/j.chom.2014.10.004  0.92
2013 Gallaher SD, Berk AJ. A rapid Q-PCR titration protocol for adenovirus and helper-dependent adenovirus vectors that produces biologically relevant results. Journal of Virological Methods. 192: 28-38. PMID 23624118 DOI: 10.1016/j.jviromet.2013.04.013  0.92
2012 Liu C, Zhao M, Jiang L, Cheng PN, Park J, Sawaya MR, Pensalfini A, Gou D, Berk AJ, Glabe CG, Nowick J, Eisenberg D. Out-of-register β-sheets suggest a pathway to toxic amyloid aggregates. Proceedings of the National Academy of Sciences of the United States of America. 109: 20913-8. PMID 23213214 DOI: 10.1073/pnas.1218792109  0.92
2012 Berk AJ. Yin and yang of mediator function revealed by human mutants. Proceedings of the National Academy of Sciences of the United States of America. 109: 19519-20. PMID 23184968 DOI: 10.1073/pnas.1217267109  0.92
2012 Ferrari R, Su T, Li B, Bonora G, Oberai A, Chan Y, Sasidharan R, Berk AJ, Pellegrini M, Kurdistani SK. Reorganization of the host epigenome by a viral oncogene. Genome Research. 22: 1212-21. PMID 22499665 DOI: 10.1101/gr.132308.111  0.92
2012 Kawamata N, Pennella MA, Woo JL, Berk AJ, Koeffler HP. Dominant-negative mechanism of leukemogenic PAX5 fusions. Oncogene. 31: 966-77. PMID 21765475 DOI: 10.1038/onc.2011.291  0.92
2011 Enomoto T, Kukimoto I, Kawano MA, Yamaguchi Y, Berk AJ, Handa H. In vitro reconstitution of SV40 particles that are composed of VP1/2/3 capsid proteins and nucleosomal DNA and direct efficient gene transfer. Virology. 420: 1-9. PMID 21917285 DOI: 10.1016/j.virol.2011.08.014  0.92
2010 Pennella MA, Liu Y, Woo JL, Kim CA, Berk AJ. Adenovirus E1B 55-kilodalton protein is a p53-SUMO1 E3 ligase that represses p53 and stimulates its nuclear export through interactions with promyelocytic leukemia nuclear bodies. Journal of Virology. 84: 12210-25. PMID 20861261 DOI: 10.1128/JVI.01442-10  0.92
2010 Gil JS, Gallaher SD, Berk AJ. Delivery of an EBV episome by a self-circularizing helper-dependent adenovirus: long-term transgene expression in immunocompetent mice. Gene Therapy. 17: 1288-93. PMID 20463755 DOI: 10.1038/gt.2010.75  0.92
2009 Wang W, Huang L, Huang Y, Yin JW, Berk AJ, Friedman JM, Wang G. Mediator MED23 links insulin signaling to the adipogenesis transcription cascade. Developmental Cell. 16: 764-71. PMID 19460352 DOI: 10.1016/j.devcel.2009.04.006  0.92
2009 Balamotis MA, Pennella MA, Stevens JL, Wasylyk B, Belmont AS, Berk AJ. Complexity in transcription control at the activation domain-mediator interface. Science Signaling. 2: ra20. PMID 19417216 DOI: 10.1126/scisignal.1164302  0.92
2009 Ferrari R, Berk AJ, Kurdistani SK. Viral manipulation of the host epigenome for oncogenic transformation. Nature Reviews. Genetics. 10: 290-4. PMID 19290008 DOI: 10.1038/nrg2539  0.92
2009 Gallaher SD, Gil JS, Dorigo O, Berk AJ. Robust in vivo transduction of a genetically stable Epstein-Barr virus episome to hepatocytes in mice by a hybrid viral vector. Journal of Virology. 83: 3249-57. PMID 19158239 DOI: 10.1128/JVI.01721-08  0.92
2008 Ferrari R, Pellegrini M, Horwitz GA, Xie W, Berk AJ, Kurdistani SK. Epigenetic reprogramming by adenovirus e1a. Science (New York, N.Y.). 321: 1086-8. PMID 18719284 DOI: 10.1126/science.1155546  0.92
2008 Horwitz GA, Zhang K, McBrian MA, Grunstein M, Kurdistani SK, Berk AJ. Adenovirus small e1a alters global patterns of histone modification. Science (New York, N.Y.). 321: 1084-5. PMID 18719283 DOI: 10.1126/science.1155544  0.92
2007 Woo JL, Berk AJ. Adenovirus ubiquitin-protein ligase stimulates viral late mRNA nuclear export. Journal of Virology. 81: 575-87. PMID 17079297 DOI: 10.1128/JVI.01725-06  0.92
2006 Schwarz J, Schwarz SC, Dorigo O, Stützer A, Wegner F, Labarca C, Deshpande P, Gil JS, Berk AJ, Lester HA. Enhanced expression of hypersensitive alpha4* nAChR in adult mice increases the loss of midbrain dopaminergic neurons. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 20: 935-46. PMID 16675851 DOI: 10.1096/fj.05-5497com  0.92
2005 Berk AJ. Recent lessons in gene expression, cell cycle control, and cell biology from adenovirus. Oncogene. 24: 7673-85. PMID 16299528 DOI: 10.1038/sj.onc.1209040  0.92
2005 Liu Y, Shevchenko A, Shevchenko A, Berk AJ. Adenovirus exploits the cellular aggresome response to accelerate inactivation of the MRN complex. Journal of Virology. 79: 14004-16. PMID 16254336 DOI: 10.1128/JVI.79.22.14004-14016.2005  0.92
2005 Yue Q, Groszer M, Gil JS, Berk AJ, Messing A, Wu H, Liu X. PTEN deletion in Bergmann glia leads to premature differentiation and affects laminar organization. Development (Cambridge, England). 132: 3281-91. PMID 15944184 DOI: 10.1242/dev.01891  0.92
2005 Wang G, Balamotis MA, Stevens JL, Yamaguchi Y, Handa H, Berk AJ. Mediator requirement for both recruitment and postrecruitment steps in transcription initiation. Molecular Cell. 17: 683-94. PMID 15749018 DOI: 10.1016/j.molcel.2005.02.010  0.92
2004 Fang L, Stevens JL, Berk AJ, Spindler KR. Requirement of Sur2 for efficient replication of mouse adenovirus type 1. Journal of Virology. 78: 12888-900. PMID 15542641 DOI: 10.1128/JVI.78.23.12888-12900.2004  0.92
2004 Bourbon HM, Aguilera A, Ansari AZ, Asturias FJ, Berk AJ, Bjorklund S, Blackwell TK, Borggrefe T, Carey M, Carlson M, Conaway JW, Conaway RC, Emmons SW, Fondell JD, Freedman LP, et al. A unified nomenclature for protein subunits of mediator complexes linking transcriptional regulators to RNA polymerase II. Molecular Cell. 14: 553-7. PMID 15175151 DOI: 10.1016/j.molcel.2004.05.011  0.92
2004 Dorigo O, Gil JS, Gallaher SD, Tan BT, Castro MG, Lowenstein PR, Calos MP, Berk AJ. Development of a novel helper-dependent adenovirus-Epstein-Barr virus hybrid system for the stable transformation of mammalian cells. Journal of Virology. 78: 6556-66. PMID 15163748 DOI: 10.1128/JVI.78.12.6556-6566.2004  0.92
2003 Schröder O, Bryant GO, Geiduschek EP, Berk AJ, Kassavetis GA. A common site on TBP for transcription by RNA polymerases II and III Embo Journal. 22: 5115-5124. PMID 14517249 DOI: 10.1093/emboj/cdg476  0.92
2003 Cantin GT, Stevens JL, Berk AJ. Activation domain-mediator interactions promote transcription preinitiation complex assembly on promoter DNA. Proceedings of the National Academy of Sciences of the United States of America. 100: 12003-8. PMID 14506297 DOI: 10.1073/pnas.2035253100  0.92
2003 Wang JC, Kanim LE, Yoo S, Campbell PA, Berk AJ, Lieberman JR. Effect of regional gene therapy with bone morphogenetic protein-2-producing bone marrow cells on spinal fusion in rats. The Journal of Bone and Joint Surgery. American Volume. 85: 905-11. PMID 12728043  0.92
2002 Harada JN, Shevchenko A, Shevchenko A, Pallas DC, Berk AJ. Analysis of the adenovirus E1B-55K-anchored proteome reveals its link to ubiquitination machinery. Journal of Virology. 76: 9194-206. PMID 12186903 DOI: 10.1128/JVI.76.18.9194-9206.2002  0.92
2002 Wang G, Berk AJ. In vivo association of adenovirus large E1A protein with the human mediator complex in adenovirus-infected and -transformed cells. Journal of Virology. 76: 9186-93. PMID 12186902 DOI: 10.1128/JVI.76.18.9186-9193.2002  0.92
2002 Stevens JL, Cantin GT, Wang G, Shevchenko A, Shevchenko A, Berk AJ. Transcription control by E1A and MAP kinase pathway via Sur2 mediator subunit. Science (New York, N.Y.). 296: 755-8. PMID 11934987 DOI: 10.1126/science.1068943  0.92
2002 Martel LS, Brown HJ, Berk AJ. Evidence that TAF-TATA box-binding protein interactions are required for activated transcription in mammalian cells. Molecular and Cellular Biology. 22: 2788-98. PMID 11909971 DOI: 10.1128/MCB.22.8.2788-2798.2002  0.92
2001 Wang G, Cantin GT, Stevens JL, Berk AJ. Characterization of mediator complexes from HeLa cell nuclear extract. Molecular and Cellular Biology. 21: 4604-13. PMID 11416138 DOI: 10.1128/MCB.21.14.4604-4613.2001  0.92
2000 Berk AJ. TBP-like factors come into focus Cell. 103: 5-8. PMID 11051541  0.92
2000 Herschman HR, MacLaren DC, Iyer M, Namavari M, Bobinski K, Green LA, Wu L, Berk AJ, Toyokuni T, Barrio JR, Cherry SR, Phelps ME, Sandgren EP, Gambhir SS. Seeing is believing: non-invasive, quantitative and repetitive imaging of reporter gene expression in living animals, using positron emission tomography. Journal of Neuroscience Research. 59: 699-705. PMID 10700006 DOI: 10.1002/(SICI)1097-4547(20000315)59:6<699::AID-JNR1>3.0.CO;2-1  0.92
1999 MacLaren DC, Gambhir SS, Satyamurthy N, Barrio JR, Sharfstein S, Toyokuni T, Wu L, Berk AJ, Cherry SR, Phelps ME, Herschman HR. Repetitive, non-invasive imaging of the dopamine D2 receptor as a reporter gene in living animals. Gene Therapy. 6: 785-91. PMID 10505102 DOI: 10.1038/  0.92
1999 Tan BT, Wu L, Berk AJ. An adenovirus-Epstein-Barr virus hybrid vector that stably transforms cultured cells with high efficiency Journal of Virology. 73: 7582-7589. PMID 10438848  0.92
1999 Lieberman JR, Daluiski A, Stevenson S, Wu L, McAllister P, Lee YP, Kabo JM, Finerman GA, Berk AJ, Witte ON. The effect of regional gene therapy with bone morphogenetic protein-2-producing bone-marrow cells on the repair of segmental femoral defects in rats. The Journal of Bone and Joint Surgery. American Volume. 81: 905-17. PMID 10428121  0.92
1999 Berk AJ. Activation of RNA polymerase II transcription Current Opinion in Cell Biology. 11: 330-335. PMID 10395559 DOI: 10.1016/S0955-0674(99)80045-3  0.92
1999 Harada JN, Berk AJ. p53-Independent and -dependent requirements for E1B-55K in adenovirus type 5 replication. Journal of Virology. 73: 5333-44. PMID 10364280  0.92
1999 Boyer TG, Martin MED, Lees E, Ricciardi RP, Berk AJ. Mammalian Srb/mediator complex is targeted by adenovirus E1A protein Nature. 399: 276-279. PMID 10353252 DOI: 10.1038/20466  0.92
1999 Martin MED, Berk AJ. Corepressor required for adenovirus E1B 55,000-molecular-weight protein repression of basal transcription Molecular and Cellular Biology. 19: 3403-3414. PMID 10207064  0.92
1999 Gambhir SS, Barrio JR, Phelps ME, Iyer M, Namavari M, Satyamurthy N, Wu L, Green LA, Bauer E, MacLaren DC, Nguyen K, Berk AJ, Cherry SR, Herschman HR. Imaging adenoviral-directed reporter gene expression in living animals with positron emission tomography. Proceedings of the National Academy of Sciences of the United States of America. 96: 2333-8. PMID 10051642 DOI: 10.1073/pnas.96.5.2333  0.92
1998 Berk AJ, Boyer TG, Kapanidis AN, Ebrighit RH, Kobayashi NN, Horn PJ, Sullivan SM, Koop R, Surby MA, Triezenberg SJ. Mechanisms of viral activators Cold Spring Harbor Symposia On Quantitative Biology. 63: 243-252. PMID 10384288  0.92
1998 Gambhir SS, Barrio JR, Wu L, Iyer M, Namavari M, Satyamurthy N, Bauer E, Parrish C, MacLaren DC, Borghei AR, Green LA, Sharfstein S, Berk AJ, Cherry SR, Phelps ME, et al. Imaging of adenoviral-directed herpes simplex virus type 1 thymidine kinase reporter gene expression in mice with radiolabeled ganciclovir. Journal of Nuclear Medicine : Official Publication, Society of Nuclear Medicine. 39: 2003-11. PMID 9829598  0.92
1998 Kobayashi N, Horn PJ, Sullivan SM, Triezenberg SJ, Boyer TG, Berk AJ. DA-complex assembly activity required for VP16C transcriptional activation Molecular and Cellular Biology. 18: 4023-4031. PMID 9632787  0.92
1998 Martin MED, Berk AJ. Adenovirus E1B 55K represses p53 activation in vitro Journal of Virology. 72: 3146-3154. PMID 9525640  0.92
1998 Shen Y, Kassavetis GA, Bryant GO, Berk AJ. Polymerase (Pol) III TATA box-binding protein (TBP)-associated factor Brf binds to a surface on tbp also required for activated Pol II transcription Molecular and Cellular Biology. 18: 1692-1700. PMID 9488486  0.92
1997 Brauner R, Nonoyama M, Laks H, Drinkwater D.C. J, McCaffery S, Drake T, Berk AJ, Sen L, Wu L. Intracoronary adenovirus-mediated transfer of immunosuppressive cytokine genes prolongs allograft survival Journal of Thoracic and Cardiovascular Surgery. 114: 923-933. PMID 9434687 DOI: 10.1016/S0022-5223(97)70006-0  0.92
1996 Bryant GO, Martel LS, Burley SK, Berk AJ. Radical mutations reveal TATA-box binding protein surfaces required for activated transcription in vivo. Genes & Development. 10: 2491-504. PMID 8843200  0.92
1996 Juo ZS, Chiu TK, Leiberman PM, Baikalov I, Berk AJ, Dickerson RE. How proteins recognize the TATA box. Journal of Molecular Biology. 261: 239-54. PMID 8757291 DOI: 10.1006/jmbi.1996.0456  0.92
1996 Shen Y, Igo M, Yalamanchili P, Berk AJ, Dasgupta A. DNA binding domain and subunit interactions of transcription factor IIIC revealed by dissection with poliovirus 3C protease Molecular and Cellular Biology. 16: 4163-4171. PMID 8754815  0.92
1996 Wu L, Berk AJ. Modification of adenovirus as gene transfer vector Journal of Investigative Medicine. 44.  0.92
1995 Berk AJ. Biochemistry meets genetics in the holoenzyme Proceedings of the National Academy of Sciences of the United States of America. 92: 11952-11954. PMID 8618821 DOI: 10.1073/pnas.92.26.11952  0.92
1995 Martinez E, Zhou Q, L'Etoile ND, Oelgeschläger T, Berk AJ, Roeder RG. Core promoter-specific function of a mutant transcription factor TFIID defective in TATA-box binding Proceedings of the National Academy of Sciences of the United States of America. 92: 11864-11868. PMID 8524864 DOI: 10.1073/pnas.92.25.11864  0.92
1995 Zhou Q, Berk AJ. The yeast TATA-binding protein (TBP) core domain assembles with human TBP- associated factors into a functional TFIID complex Molecular and Cellular Biology. 15: 534-539. PMID 7799963  0.92
1995 Goga A, Liu X, Hambuch TM, Senechal K, Major E, Berk AJ, Witte ON, Sawyers CL. p53 dependent growth suppression by the c-Abl nuclear tyrosine kinase. Oncogene. 11: 791-9. PMID 7651743  0.92
1995 Liu X, Berk AJ. Reversal of in vitro p53 squelching by both TFIIB and TFIID Molecular and Cellular Biology. 15: 6474-6478. PMID 7565799  0.92
1995 Kobayashi N, Boyer TG, Berk AJ. A class of activation domains interacts directly with TFIIA and stimulates TFIIA-TFIID-promoter complex assembly Molecular and Cellular Biology. 15: 6465-6473. PMID 7565798  0.92
1994 Renee Yew P, Liu X, Berk AJ. Adenovims E1B oncoprotein tethers a transcriptional repression domain to p53 Genes and Development. 8: 190-202. PMID 8299938  0.92
1994 Shaked A, Csete ME, Drazan KE, Bullington D, Wu L, Busuttil RW, Berk AJ. Adenovirus-mediated gene transfer in the transplant setting. II. Successful expression of transferred cDNA in syngeneic liver grafts. Transplantation. 57: 1508-11. PMID 8197615  0.92
1994 Csete ME, Drazan KE, van Bree M, McIntee DF, McBride WH, Bett A, Graham FL, Busuttil RW, Berk AJ, Shaked A. Adenovirus-mediated gene transfer in the transplant setting. I. Conditions for expression of transferred genes in cold-preserved hepatocytes. Transplantation. 57: 1502-7. PMID 8197614  0.92
1994 Geisberg JV, Lee WS, Berk AJ, Ricciardi RP. The zinc finger region of the adenovirus E1A transactivating domain complexes with the TATA box binding protein Proceedings of the National Academy of Sciences of the United States of America. 91: 2488-2492. PMID 8146144  0.92
1994 L'Etoile ND, Fahnestock ML, Shen Y, Aebersold R, Berk AJ. Human transcription factor IIIC box B binding subunit. Proceedings of the National Academy of Sciences of the United States of America. 91: 1652-6. PMID 8127861  0.92
1994 Lieberman PM, Berk AJ. A mechanism for TAFs in transcriptional activation: Activation domain enhancement of TFIID-TFIIA-promoter DNA complex formation Genes and Development. 8: 995-1006. PMID 7926793  0.92
1993 Liu X, Miller CW, Koeffler PH, Berk AJ. The p53 activation domain binds the TATA box-binding polypeptide in holo-TFIID, and a neighboring p53 domain inhibits transcription Molecular and Cellular Biology. 13: 3291-3300. PMID 8497252  0.92
1993 Zhou Q, Boyer TG, Berk AJ. Factors (TAFs) required for activated transcription interact with TATA box-binding protein conserved core domain Genes and Development. 7: 180-187. PMID 8436290  0.92
1993 Kerr LD, Ransone LJ, Wamsley P, Schmitt MJ, Boyer TG, Zhou Q, Berk AJ, Verma IM. Association between proto-oncoprotein Rel and TATA-binding protein mediates transcriptional activation by NF-kappa B. Nature. 365: 412-9. PMID 8413585 DOI: 10.1038/365412a0  0.92
1993 Clark ME, Lieberman PM, Berk AJ, Dasgupta A. Direct cleavage of human TATA-binding protein by poliovirus protease 3C in vivo and in vitro Molecular and Cellular Biology. 13: 1232-1237. PMID 8380894  0.92
1993 Boyer TG, Berk AJ. Functional interaction of adenovirus E1A with holo-TFIID Genes and Development. 7: 1810-1823. PMID 8370528  0.92
1992 Yew PR, Berk AJ. Inhibition of p53 transactivation required for transformation by adenovirus early 1B protein Nature. 357: 82-85. PMID 1533443  0.92
1992 Zhou Q, Lieberman PM, Boyer TG, Berk AJ. Holo-TFIID supports transcriptional stimulation by diverse activators and from a TATA-less promoter Genes and Development. 6: 1964-1974. PMID 1398073  0.92
1991 Usuda Y, Kubota A, Berk AJ, Handa H. Affinity purification of transcription factor IIA from HeLa cell nuclear extracts Embo Journal. 10: 2305-2310. PMID 2065666  0.92
1991 Zhou QA, Schmidt MC, Berk AJ. Requirement for acidic amino acid residues immediately N-terminal to the conserved domain of Saccharomyces cerevisiae TFIID. The Embo Journal. 10: 1843-52. PMID 2050121  0.92
1991 Lieberman PM, Schmidt MC, Kao CC, Berk AJ. Two distinct domains in the yeast transcription factor IID and evidence for a TATA box-induced conformational change. Molecular and Cellular Biology. 11: 63-74. PMID 1986253  0.92
1991 Lee WS, Kao CC, Bryant GO, Liu X, Berk AJ. Adenovirus E1A activation domain binds the basic repeat in the TATA box transcription factor Cell. 67: 365-376. PMID 1833071 DOI: 10.1016/0092-8674(91)90188-5  0.92
1991 Lieberman PM, Berk AJ. The Zta trans-activator protein stabilizes TFIID association with promoter DNA by direct protein-protein interaction Genes &Amp; Development. 5: 2441-2454. PMID 1661258  0.92
1990 Leong K, Lee W, Berk AJ. High-level transcription from the adenovirus major late promoter requires downstream binding sites for late-phase-specific factors Journal of Virology. 64: 51-60. PMID 2293670  0.92
1990 Kao CC, Lieberman PM, Schmidt MC, Zhou Q, Pei R, Berk AJ. Cloning of a transcriptionally active human TATA binding factor. Science (New York, N.Y.). 248: 1646-50. PMID 2194289  0.92
1990 Lieberman PM, Berk AJ. In vitro transcriptional activation, dimerization, and DNA-binding specificity of the Epstein-Barr virus Zta protein Journal of Virology. 64: 2560-2568. PMID 2159531  0.92
1990 Kao CC, Yew PR, Berk AJ. Domains required for in vitro association between the cellular p53 and the adenovirus 2 E1B 55k proteins Virology. 179: 806-814. PMID 2146804 DOI: 10.1016/0042-6822(90)90148-K  0.92
1990 Yew PR, Cheng Kao C, Berk AJ. Dissection of functional domains in the adenovirus 2 early 1b 55k polypeptide by suppressor-linker insertional mutagenesis Virology. 179: 795-805. PMID 2146803 DOI: 10.1016/0042-6822(90)90147-J  0.92
1990 Smale ST, Schmidt MC, Berk AJ, Baltimore D. Transcriptional activation by Sp1 as directed through TATA or initiator: specific requirement for mammalian transcription factor IID. Proceedings of the National Academy of Sciences of the United States of America. 87: 4509-13. PMID 2141169  0.92
1990 Berk AJ, Schmidt MC. How do transcription factors work? Genes and Development. 4: 151-155.  0.92
1989 Boulanger PA, L'etoile ND, Berk AJ. A DNA-binding domain or human transcription factor IIIC2 Nucleic Acids Research. 17: 7761-7770. PMID 2798126 DOI: 10.1093/nar/17.19.7761  0.92
1989 Yoshinaga SK, L'Etoile ND, Berk AJ. Purification and characterization of transcription factor IIIC2 Journal of Biological Chemistry. 264: 10726-10731. PMID 2732244  0.92
1989 Schmidt MC, Kao CC, Pei R, Berk AJ. Yeast TATA-box transcription factor gene. Proceedings of the National Academy of Sciences of the United States of America. 86: 7785-9. PMID 2682626  0.92
1989 Schmidt MC, Zhou Q, Berk AJ. Sp1 activates transcription without enhancing DNA-binding activity of the TATA box factor. Molecular and Cellular Biology. 9: 3299-307. PMID 2677669  0.92
1989 Fradkin LG, Yoshinaga SK, Berk AJ, Dasgupta A. Human transcription factor TFIIIC2 specifically interacts with a unique sequence in the Xenopus laevis 5S rRNA gene Molecular and Cellular Biology. 9: 4941-4950. PMID 2601702  0.92
1989 Pei R, Berk AJ. Multiple transcription factor binding sites mediate adenovirus E1A transactivation Journal of Virology. 63: 3499-3506. PMID 2545919  0.92
1989 Berk AJ. Regulation of eukaryotic transcription factors by post-translational modification Bba - Gene Structure and Expression. 1009: 103-109. PMID 2529903 DOI: 10.1016/0167-4781(89)90087-0  0.92
1989 Berk AJ. Characterization of RNA molecules by S1 nuclease analysis Methods in Enzymology. 180: 334-347. PMID 2482423 DOI: 10.1016/0076-6879(89)80110-7  0.92
1988 Dean N, Berk AJ. Ordering promoter binding of class III transcription factors TFIIIC1 and TFIIIC2 Molecular and Cellular Biology. 8: 3017-3025. PMID 3145406  0.92
1988 Brunet LJ, Berk AJ. Concentration dependence of transcriptional transactivation in inducible E1A-containing human cells Molecular and Cellular Biology. 8: 4799-4807. PMID 2974921  0.92
1988 Leong K, Brunet L, Berk AJ. Factors responsible for the higher transcriptional activity of extracts of adenovirus-infected cells fractionate with the TATA box transcription factor Molecular and Cellular Biology. 8: 1765-1774. PMID 2967913  0.92
1988 Wu L, Berk AJ. Transcriptional activation by the pseudorabies virus immediate early protein requires the TATA box element in the adenovirus 2 E1B promoter Virology. 167: 318-322. PMID 2847423 DOI: 10.1016/0042-6822(88)90089-X  0.92
1987 Dean N, Berk AJ. Separation of TFIIIC into two functional components by sequence specific DNA affinity chromatography Nucleic Acids Research. 15: 9895-9907. PMID 3697084 DOI: 10.1093/nar/15.23.9895  0.92
1987 Boulanger PA, Yoshinaga SK, Berk AJ. DNA-binding properties and characterization of human transcription factor TFIIIC2 Journal of Biological Chemistry. 262: 15098-15105. PMID 3667626  0.92
1987 Yoshinaga SK, Boulanger PA, Berk AJ. Resolution of human transcription factor TFIIIC into two functional components Proceedings of the National Academy of Sciences of the United States of America. 84: 3585-3589. PMID 3473469  0.92
1987 Barker DD, Berk AJ. Adenovirus proteins from both E1B reading frames are required for transformation of rodent cells by viral infection and DNA transfection Virology. 156: 107-121. PMID 2949421 DOI: 10.1016/0042-6822(87)90441-7  0.92
1987 Fradkin LG, Yoshinaga SK, Berk AJ, Dasgupta A. Inhibition of host cell RNA polymerase III-mediated transcription by poliovirus: inactivation of specific transcription factors Molecular and Cellular Biology. 7: 3880-3887. PMID 2828918  0.92
1986 Berk AJ. Adenovirus promoters and E1A transactivation Annual Review of Genetics. 20: 45-79. PMID 3028247  0.92
1986 Berk AJ. Functions of adenovirus E1A Cancer Surveys. 5: 367-387. PMID 2946406  0.92
1986 Leong K, Berk AJ. Adenovirus early region 1A protein increases the number of template molecules transcribed in cell-free extracts Proceedings of the National Academy of Sciences of the United States of America. 83: 5844-5848. PMID 2942942  0.92
1986 Tsukamoto AS, Ponticelli A, Berk AJ, Gaynor RB. Genetic mapping of a major site of phosphorylation in adenovirus type 2 E1A proteins Journal of Virology. 59: 14-22. PMID 2940374  0.92
1986 Yoshinaga S, Dean N, Han M, Berk AJ. Adenovirus stimulation of transcription by RNA polymerase III: evidence for an E1A-dependent increase in transcription factor IIIC concentration The Embo Journal. 5: 343-354. PMID 2940084  0.92
1986 Tsukamoto AS, Ferguson B, Rosenberg M, Weissman IL, Berk AJ. An immunodominant domain in adenovirus type 2 early region 1A proteins Journal of Virology. 60: 312-316. PMID 2427749  0.92
1985 Spindler KR, Eng CY, Berk AJ. An adenovirus early region 1A protein is required for maximal viral DNA replication in growth-arrested human cells Journal of Virology. 53: 742-750. PMID 3973965  0.92
1985 Fradkin LG, Leong K, Morrow CD, Berk AJ, Dasgupta A. Primer-dependent eukaryotic RNA polymerase capable of accurate transcription from the adenovirus major late promoter in a reconstituted system Proceedings of the National Academy of Sciences of the United States of America. 82: 7979-7983. PMID 3865210 DOI: 10.1073/pnas.82.23.7979  0.92
1985 Gaynor RB, Feldman LT, Berk AJ. Transcription of class III genes activated by viral immediate early proteins Science. 230: 447-450. PMID 2996135  0.92
1984 Montell C, Fisher EF, Caruthers MH, Berk AJ. Control of adenovirus E1B mRNA synthesis by a shift in the activities of RNA splice sites. Molecular and Cellular Biology. 4: 966-72. PMID 6727875  0.92
1984 Montell C, Berk AJ. Elimination of mRNA splicing by a point mutation outside the conserved GU at 5' splice sites. Nucleic Acids Research. 12: 3821-7. PMID 6587322 DOI: 10.1093/nar/12.9.3821  0.92
1984 Spindler KR, Berk AJ. Translation efficiency of adenovirus early region 1A mRNAs deleted in the 5' untranslated region Journal of Virology. 51: 884-888. PMID 6471170  0.92
1984 Spindler KR, Rosser DSE, Berk AJ. Analysis of adenovirus transforming proteins from early regions 1A and 1B with antisera to inducible fusion antigens produced in Escherichia coli Journal of Virology. 49: 132-141. PMID 6361277  0.92
1984 Osborne TF, Arvidson DN, Tyau ES, Dunsworth-Browne M, Berk AJ. Transcription control region within the protein-coding portion of adenovirus E1A genes Molecular and Cellular Biology. 4: 1293-1305. PMID 6334230  0.92
1984 Spindler KR, Berk AJ. Rapid intracellular turnover of adenovirus 5 early region 1A proteins Journal of Virology. 52: 706-710. PMID 6333516  0.92
1984 Gaynor RB, Hillman D, Berk AJ. Adenovirus early region 1A protein activates transcription of a nonviral gene introduced into mammalian cells by infection or transfection Proceedings of the National Academy of Sciences of the United States of America. 81: 1193-1197. PMID 6199792  0.92
1983 Gaynor RB, Berk AJ. Cis-acting induction of adenovirus transcription Cell. 33: 683-693. PMID 6871990 DOI: 10.1016/0092-8674(83)90011-9  0.92
1983 Osborne TF, Berk AJ. Far upstream initiation sites for adenovirus early region 1A transcription are utilized after the onset of viral DNA replication Journal of Virology. 45: 594-599. PMID 6834469  0.92
1983 Montell C, Fisher EF, Caruthers MH, Berk AJ. Inhibition of RNA cleavage but not polyadenylation by a point mutation in mRNA 3' consensus sequence AAUAAA. Nature. 305: 600-5. PMID 6194440 DOI: 10.1038/305600a0  0.92
1982 Gaynor RB, Tsukamoto A, Montell C, Berk AJ. Enhanced expression of adenovirus transforming proteins. Journal of Virology. 44: 276-85. PMID 7143568  0.92
1982 Osborne TF, Gaynor RB, Berk AJ. The TATA homology and the mRNA 5′ untranslated sequence are not required for expression of essential adenovirus E1A functions Cell. 29: 139-148. PMID 7105179 DOI: 10.1016/0092-8674(82)90098-8  0.92
1982 Montell C, Fisher EF, Caruthers MH, Berk AJ. Resolving the functions of overlapping viral genes by site-specific mutagenesis at a mRNA splice site. Nature. 295: 380-4. PMID 7057903 DOI: 10.1038/295380a0  0.92
1981 Osborne TF, Schell RE, Burch-Jaffe E, Berget SJ, Berk AJ. Mapping a eukaryotic promoter: A DNA sequence required for in vivo expression of adenovirus pre-early functions Proceedings of the National Academy of Sciences of the United States of America. 78: 1381-1385. PMID 6262792 DOI: 10.1073/pnas.78.3.1381  0.92
1980 Dunsworth-Browne M, Schell RE, Berk AJ. Adenovirus terminal protein protects single stranded DNA from digestion by a cellular exonuclease Nucleic Acids Research. 8: 543-554. PMID 6255444 DOI: 10.1093/nar/8.3.543  0.92
1980 Sharp PA, Berk AJ, Berget SM. [69] Transcription maps of adenovirus Methods in Enzymology. 65: 750-768. PMID 6246372 DOI: 10.1016/S0076-6879(80)65071-X  0.92
1979 Berk AJ, Lee F, Harrison T, Williams J, Sharp PA. Phenotypes of adenovirus-5 host-range mutants for early mRNA synthesis Symposia On Quantitative Biology. 44: 429-436. PMID 6933039  0.92
1979 Berk AJ, Lee F, Harrison T, Williams J, Sharp PA. Pre-early adenovirus 5 gene product regulates synthesis of early viral messenger RNAs Cell. 17: 935-944. PMID 487437 DOI: 10.1016/0092-8674(79)90333-7  0.92
1978 Berk AJ, Sharp PA. Structure of the adenovirus 2 early mRNAs Cell. 14: 695-711. PMID 688389 DOI: 10.1016/0092-8674(78)90252-0  0.92
1978 Berk AJ, Sharp PA. Spliced early mRNAs of simian virus 40 Proceedings of the National Academy of Sciences of the United States of America. 75: 1274-1278. PMID 206891  0.92
1977 Berk AJ, Sharp PA. Sizing and mapping of early adenovirus mRNAs by gel electrophoresis of S1 endonuclease-digested hybrids Cell. 12: 721-732. PMID 922889 DOI: 10.1016/0092-8674(77)90272-0  0.92
1977 Berk AJ, Sharp PA. Ultraviolet mapping of the adenovirus 2 early promoters Cell. 12: 45-55. PMID 902320 DOI: 10.1016/0092-8674(77)90184-2  0.92
1977 Berget SM, Berk AJ, Harrison T, Sharp PA. Spliced segments at the 5' termini of adenovirus-2 late mRNA: A role for heterogeneous nuclear RNA in mammalian cells Cold Spring Harbor Symposia On Quantitative Biology. 42: 523-529. PMID 277361  0.92
1976 Berk AJ, Clayton DA. Mechanism of mitochondrial DNA replication in mouse L-cells: Topology of circular daughter molecules and dynamics of catenated oligomer formation Journal of Molecular Biology. 100: 85-102. PMID 1249842 DOI: 10.1016/S0022-2836(76)80036-8  0.92
1974 Berk AJ, Clayton DA. Mechanism of mitochondrial DNA replication in mouse L-cells: Asynchronous replication of strands, segregation of circular daughter molecules, aspects of topology and turnover of an initiation sequence Journal of Molecular Biology. 86: 801-824. PMID 4473554 DOI: 10.1016/0022-2836(74)90355-6  0.92
1973 Berk AJ, Clayton DA. A genetically distinct thymidine kinase in mammalian mitochondria. Exclusive labeling of mitochondrial deoxyribonucleic acid Journal of Biological Chemistry. 248: 2722-2729. PMID 4735344  0.92
1973 Berk AJ, Meyer BJ, Clayton DA. Mitochondrial-specific thymidine kinase. Archives of Biochemistry and Biophysics. 154: 563-5. PMID 4632422 DOI: 10.1016/0003-9861(73)90009-X  0.92
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