Rasika M. Harshey - Related publications

University of Texas at Austin, Austin, Texas, U.S.A. 
Molecular Biology, Microbiology Biology
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Liu J, Mei Q, Nimer S, Fitzgerald DM, Rosenberg SM. Genomic mapping of DNA-repair reaction intermediates in living cells with engineered DNA structure-trap proteins. Methods in Enzymology. 661: 155-181. PMID 34776211 DOI: 10.1016/bs.mie.2021.09.015   
2021 Ge J, Qiu X. Expression, purification, characterization of DNA binding activity and crystallization of a putative type II DNA Cytosine-5-methyltransferase from Microcystis aeruginosa. Protein Expression and Purification. 189: 105988. PMID 34634480 DOI: 10.1016/j.pep.2021.105988   
2021 Fogg JM, Judge AK, Stricker E, Chan HL, Zechiedrich L. Supercoiling and looping promote DNA base accessibility and coordination among distant sites. Nature Communications. 12: 5683. PMID 34584096 DOI: 10.1038/s41467-021-25936-2   
2021 Pan J, Lian K, Sarre A, Leiros HS, Williamson A. Bacteriophage origin of some minimal ATP-dependent DNA ligases: a new structure from Burkholderia pseudomallei with striking similarity to Chlorella virus ligase. Scientific Reports. 11: 18693. PMID 34548548 DOI: 10.1038/s41598-021-98155-w   
2021 Padmanabhan S, Sanyal K, Dubey D. Identification and analysis of the origin recognition complex in the human fungal pathogen . Micropublication Biology. 2021. PMID 34568775 DOI: 10.17912/micropub.biology.000465   
2021 Chen S, Lees-Miller JP, He Y, Lees-Miller SP. Structural insights into the role of DNA-PK as a master regulator in NHEJ. Genome Instability & Disease. 2: 195-210. PMID 34723130 DOI: 10.1007/s42764-021-00047-w   
2021 Richardson W, Kang GW, Lee HJ, Kwon KM, Kim S, Kim HJ. Chasing the structural diversity of the transcription regulator HigA2. Iucrj. 8: 823-832. PMID 34584743 DOI: 10.1107/S2052252521007715   
2021 Zagoskin MV, Wang J. Programmed DNA elimination: silencing genes and repetitive sequences in somatic cells. Biochemical Society Transactions. 49: 1891-1903. PMID 34665225 DOI: 10.1042/BST20190951   
2021 Leavitt JC, Gilcrease EB, Woodbury BM, Teschke CM, Casjens SR. Intravirion DNA Can Access the Space Occupied by the Bacteriophage P22 Ejection Proteins. Viruses. 13. PMID 34452369 DOI: 10.3390/v13081504   
2021 Liu W, Li J, Xu Y, Yin D, Zhu X, Fu H, Su X, Guo X. Complete Mapping of DNA-Protein Interactions at the Single-Molecule Level. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). e2101383. PMID 34609790 DOI: 10.1002/advs.202101383   
2021 DebRoy S, Shropshire WC, Tran CN, Hao H, Gohel M, Galloway-Peña J, Hanson B, Flores AR, Shelburne SA. Characterization of the Type I Restriction Modification System Broadly Conserved among Group A Streptococci. Msphere. e0079921. PMID 34787444 DOI: 10.1128/mSphere.00799-21   
2021 Boucher D, Kariawasam R, Burgess J, Gimenez A, Ocampo TE, Ferguson B, Naqi A, Walker GJ, Bolderson E, Gamsjaeger R, O'Byrne KJ, Cubeddu L, Khanna KK, Richard DJ. hSSB2 (NABP1) is required for the recruitment of RPA during the cellular response to DNA UV damage. Scientific Reports. 11: 20256. PMID 34642383 DOI: 10.1038/s41598-021-99355-0   
2021 Sarkar R, Petrushenko ZM, Dawson DS, Rybenkov VV. Ycs4 Subunit of Condensin Binds DNA and Modulates the Enzyme Turnover. Biochemistry. PMID 34723504 DOI: 10.1021/acs.biochem.1c00473   
2021 Thornbury D, Goray M, van Oorschot RAH. Transfer of DNA without contact from used clothing, pillowcases and towels by shaking agitation. Science & Justice : Journal of the Forensic Science Society. 61: 797-805. PMID 34802654 DOI: 10.1016/j.scijus.2021.10.005   
2021 Son H, Bae S, Lee S. A thermodynamic understanding of the salt-induced B-to-Z transition of DNA containing BZ junctions. Biochemical and Biophysical Research Communications. 583: 142-145. PMID 34735876 DOI: 10.1016/j.bbrc.2021.10.065   
2021 Zentout S, Smith R, Jacquier M, Huet S. New Methodologies to Study DNA Repair Processes in Space and Time Within Living Cells. Frontiers in Cell and Developmental Biology. 9: 730998. PMID 34589495 DOI: 10.3389/fcell.2021.730998   
2021 Nitiss JL, Kiianitsa K, Sun Y, Nitiss KC, Maizels N. Topoisomerase Assays. Current Protocols. 1: e250. PMID 34606690 DOI: 10.1002/cpz1.250   
2021 Ouyang P, Fang C, Han J, Zhang J, Yang Y, Qing Y, Chen Y, Shang W, Du J. A DNA Electrochemical Sensor via Terminal Protection of Small-Molecule-Linked DNA for Highly Sensitive Protein Detection. Biosensors. 11. PMID 34821667 DOI: 10.3390/bios11110451   
2021 Lo CY, Gao Y. DNA Helicase-Polymerase Coupling in Bacteriophage DNA Replication. Viruses. 13. PMID 34578319 DOI: 10.3390/v13091739   
2021 Singh JK, Smith R, Rother MB, de Groot AJL, Wiegant WW, Vreeken K, D'Augustin O, Kim RQ, Qian H, Krawczyk PM, González-Prieto R, Vertegaal ACO, Lamers M, Huet S, van Attikum H. Zinc finger protein ZNF384 is an adaptor of Ku to DNA during classical non-homologous end-joining. Nature Communications. 12: 6560. PMID 34772923 DOI: 10.1038/s41467-021-26691-0   
2021 Meier B, Volkova NV, Wang B, González-Huici V, Bertolini S, Campbell PJ, Gerstung M, Gartner A. C. elegans genome-wide analysis reveals DNA repair pathways that act cooperatively to preserve genome integrity upon ionizing radiation. Plos One. 16: e0258269. PMID 34614038 DOI: 10.1371/journal.pone.0258269   
2021 Li J, Sun C, Lin Y, Zhi H, Fu Y, Liu Z. The interaction of proanthocyanidins with DNA molecules studied by atomic force microscopy and spectroscopic method. Ultramicroscopy. 230: 113393. PMID 34607224 DOI: 10.1016/j.ultramic.2021.113393   
2021 Chen Y, Li Y, Xiong J, Lan B, Wang X, Liu J, Lin J, Fei Z, Zheng X, Chen C. Role of PRKDC in cancer initiation, progression, and treatment. Cancer Cell International. 21: 563. PMID 34702253 DOI: 10.1186/s12935-021-02229-8   
2021 Li J, Liang W, Liu Y, Ren Z, Ci D, Chang J, Qian W. The Arabidopsis ATR-SOG1 signaling module regulates pleiotropic developmental adjustments in response to 3'-blocked DNA repair intermediates. The Plant Cell. PMID 34791445 DOI: 10.1093/plcell/koab282   
2021 Gabriel P, Maranha FG, Nordlander E, Neves A, Terenzi H. A heterotrinuclear bioinspired coordination complex capable of binding to DNA and emulation of nuclease activity. Journal of Inorganic Biochemistry. 226: 111631. PMID 34717251 DOI: 10.1016/j.jinorgbio.2021.111631   
2021 Okafor IC, Choi J, Ha T. Single Molecule Methods for studying CRISPR Cas9-Induced DNA Unwinding. Methods (San Diego, Calif.). PMID 34767923 DOI: 10.1016/j.ymeth.2021.11.003   
2021 Hu J, Bai YS, Zheng LL, Jia NX, Yu DJ, Zhang G. Protein-DNA Binding Residue Prediction via Bagging Strategy and Sequence-based Cube-Format Feature. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 34714748 DOI: 10.1109/TCBB.2021.3123828   
2021 Swan RL, Cowell IG, Austin CA. . Molecular Pharmacology. PMID 34689119 DOI: 10.1124/molpharm.121.000374   
2021 Bindu Ramesan A, Vittala SK, Joseph J. DNA condensation and formation of ultrathin nanosheets via DNA assisted self-assembly of an amphiphilic fullerene derivative. Journal of Photochemistry and Photobiology. B, Biology. 226: 112352. PMID 34798504 DOI: 10.1016/j.jphotobiol.2021.112352   
2021 Salerno D, Marrano CA, Cassina V, Cristofalo M, Shao Q, Finzi L, Mantegazza F, Dunlap D. Nanomechanics of negatively supercoiled diaminopurine-substituted DNA. Nucleic Acids Research. PMID 34718727 DOI: 10.1093/nar/gkab982   
2021 Cappadocia L, Kochańczyk T, Lima CD. DNA asymmetry promotes SUMO modification of the single-stranded DNA-binding protein RPA. The Embo Journal. e103787. PMID 34585421 DOI: 10.15252/embj.2019103787   
2021 Zheng M, Li Z, Liu L, Li M, Paluzzi VE, Hyun Choi J, Mao C. Kinetic DNA Self-Assembly: Simultaneously Co-folding Complementary DNA Strands into Identical Nanostructures. Journal of the American Chemical Society. PMID 34808053 DOI: 10.1021/jacs.1c09925   
2021 Thakur BL, Ray A, Redon CE, Aladjem MI. Preventing excess replication origin activation to ensure genome stability. Trends in Genetics : Tig. PMID 34625299 DOI: 10.1016/j.tig.2021.09.008   
2021 Costa PM. Current aspects of DNA damage and repair in ecotoxicology: a mini-review. Ecotoxicology (London, England). PMID 34623548 DOI: 10.1007/s10646-021-02487-2   
2021 Sánchez-Osuna M, Cortés P, Lee M, Smith AT, Barbé J, Erill I. Non-canonical LexA proteins regulate the SOS response in the Bacteroidetes. Nucleic Acids Research. PMID 34614190 DOI: 10.1093/nar/gkab773   
2021 Zhang R, Lai W, Wang H. Quantification of Epigenetic DNA Modifications in the Subchromatin Structure Matrix Attachment Regions by Stable Isotope Dilution UHPLC-MS/MS Analysis. Analytical Chemistry. PMID 34783527 DOI: 10.1021/acs.analchem.1c04151   
2021 Li Y, Pei J, Lu X, Jiao Y, Liu F, Wu X, Liu J, Ding B. Hierarchical Assembly of Super-DNA Origami Based on a Flexible and Covalent-Bound Branched DNA Structure. Journal of the American Chemical Society. PMID 34783532 DOI: 10.1021/jacs.1c09472   
2021 Liu B, Li S, Liu Y, Chen H, Hu Z, Wang Z, Zhao Y, Zhang L, Ma B, Wang H, Matthews S, Wang Y, Zhang K. Bacteriophage Twort protein Gp168 is a β-clamp inhibitor by occupying the DNA sliding channel. Nucleic Acids Research. PMID 34614154 DOI: 10.1093/nar/gkab875   
2021 Mani C, Acharya G, Kshirsagar S, Vijayan M, Khan H, Hemachandra Reddy P, Palle K. A Novel Role for BRIP1/FANCJ in Neuronal Cells Health and in Resolving Oxidative Stress-Induced DNA Lesions. Journal of Alzheimer's Disease : Jad. PMID 34776453 DOI: 10.3233/JAD-215305   
2021 Muzzopappa F, Hertzog M, Erdel F. DNA length tunes the fluidity of DNA-based condensates. Biophysical Journal. 120: 1288-1300. PMID 33640380 DOI: 10.1016/j.bpj.2021.02.027   
2021 Katerji M, Duerksen-Hughes PJ. DNA damage in cancer development: special implications in viral oncogenesis. American Journal of Cancer Research. 11: 3956-3979. PMID 34522461   
2021 James RC, Bellani MA, Zhang J, Huang J, Shaik A, Pokharel D, Gali H, Gichimu J, Thazhathveetil AK, Seidman MM. Visualizing replication fork encounters with DNA interstrand crosslinks. Methods in Enzymology. 661: 53-75. PMID 34776223 DOI: 10.1016/bs.mie.2021.08.015   
2021 Bae S, Kim JS. Potential of Mean Force for DNA Wrapping Around a Cationic Nanoparticle. Journal of Chemical Theory and Computation. PMID 34792353 DOI: 10.1021/acs.jctc.1c00797   
2021 López-Vidriero I, Godoy M, Grau J, Peñuelas M, Solano R, Franco-Zorrilla JM. DNA features beyond the transcription factor binding site specify target recognition by plant MYC2-related bHLH proteins. Plant Communications. 2: 100232. PMID 34778747 DOI: 10.1016/j.xplc.2021.100232   
2021 Zhang Y, Feng Y, Liang Y, Yang J, Zhang C. Development of Synthetic DNA Circuit and Networks for Molecular Information Processing. Nanomaterials (Basel, Switzerland). 11. PMID 34835719 DOI: 10.3390/nano11112955   
2021 Day M, Oliver AW, Pearl LH. Phosphorylation-dependent assembly of DNA damage response systems and the central roles of TOPBP1. Dna Repair. 108: 103232. PMID 34678589 DOI: 10.1016/j.dnarep.2021.103232   
2021 Wang X, Liu M, Peng F, Ding X. Hydrophobic magnetic deep eutectic solvent: Synthesis, properties, and application in DNA separation. Journal of Chromatography. A. 1659: 462626. PMID 34695692 DOI: 10.1016/j.chroma.2021.462626   
2021 Ren J, Lee HM, Shen J, Na D. Advanced biotechnology using methyltransferase and its applications in bacteria: a mini review. Biotechnology Letters. PMID 34820721 DOI: 10.1007/s10529-021-03208-9   
2021 Li S, Fu Z, Wang C, Shang X, Zhao Y, Liu C, Pei M. An ultrasensitive and specific electrochemical biosensor for DNA detection based on T7 exonuclease-assisted regulatory strand displacement amplification. Analytica Chimica Acta. 1183: 338988. PMID 34627518 DOI: 10.1016/j.aca.2021.338988   
2021 Kang Z, Fu P, Alcivar AL, Fu H, Redon C, Foo TK, Zuo Y, Ye C, Baxley R, Madireddy A, Buisson R, Bielinsky AK, Zou L, Shen Z, Aladjem MI, et al. BRCA2 associates with MCM10 to suppress PRIMPOL-mediated repriming and single-stranded gap formation after DNA damage. Nature Communications. 12: 5966. PMID 34645815 DOI: 10.1038/s41467-021-26227-6