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Song Yi, Ph.D. - Publications

Affiliations: 
2009 Biology University of Iowa, Iowa City, IA 
Area:
Molecular Biology, Microbiology Biology, Cell Biology
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46 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Li Y, Zhang Y, Li X, Yi S, Xu J. Gain-of-Function Mutations: An Emerging Advantage for Cancer Biology. Trends in Biochemical Sciences. PMID 31047772 DOI: 10.1016/J.Tibs.2019.03.009  0.413
2019 Li Y, McGrail DJ, Xu J, Li J, Yi S, Sahni N. Abstract 3390: RNA interactome topology perturbation analysis reveals candidate driver mutations in cancer Cancer Research. DOI: 10.1158/1538-7445.Sabcs18-3390  0.603
2018 Singarapu N, Ma K, Reeh KAG, Shen J, Lancaster JN, Yi S, Xie H, Orkin SH, Manley NR, Ehrlich LIR, Jiang N, Richie ER. Polycomb Repressive Complex 2 is essential for development and maintenance of a functional TEC compartment. Scientific Reports. 8: 14335. PMID 30254371 DOI: 10.1038/S41598-018-32729-Z  0.335
2018 Li Y, McGrail DJ, Xu J, Li J, Liu NN, Sun M, Lin R, Pancsa R, Zhang J, Lee JS, Wang H, Mills GB, Li X, Yi S, Sahni N. MERIT: Systematic analysis and characterization of Mutational Effect on RNA Interactome Topology. Hepatology (Baltimore, Md.). PMID 30153342 DOI: 10.1002/Hep.30242  0.659
2018 Li Y, McGrail DJ, Xu J, Mills GB, Sahni N, Yi S. Gene Regulatory Network Perturbation by Genetic and Epigenetic Variation. Trends in Biochemical Sciences. PMID 29941230 DOI: 10.1016/J.Tibs.2018.05.002  0.623
2018 Li Y, McGrail DJ, Latysheva N, Yi S, Babu MM, Sahni N. Pathway perturbations in signaling networks: Linking genotype to phenotype. Seminars in Cell & Developmental Biology. PMID 29738884 DOI: 10.1016/J.Semcdb.2018.05.001  0.655
2018 McGrail DJ, Federico L, Li Y, Dai H, Lu Y, Mills GB, Yi S, Lin SY, Sahni N. Multi-omics analysis reveals neoantigen-independent immune cell infiltration in copy-number driven cancers. Nature Communications. 9: 1317. PMID 29615613 DOI: 10.1038/S41467-018-03730-X  0.59
2018 Ng PK, Li J, Jeong KJ, Shao S, Chen H, Tsang YH, Sengupta S, Wang Z, Bhavana VH, Tran R, Soewito S, Minussi DC, Moreno D, Kong K, Dogruluk T, ... ... Yi S, et al. Systematic Functional Annotation of Somatic Mutations in Cancer. Cancer Cell. 33: 450-462.e10. PMID 29533785 DOI: 10.1016/J.Ccell.2018.01.021  0.647
2018 Li Y, Li L, Wang Z, Pan T, Sahni N, Jin X, Wang G, Li J, Zheng X, Zhang Y, Xu J, Yi S, Li X. LncMAP: Pan-cancer atlas of long noncoding RNA-mediated transcriptional network perturbations. Nucleic Acids Research. PMID 29325141 DOI: 10.1093/Nar/Gkx1311  0.626
2018 Liang H, Ng PK, Li J, Jeong KJ, Lu Y, Yi S, Sahni N, Mills G. Abstract 397: Systematic functional annotation of somatic mutations in cancer Cancer Research. 78: 397-397. DOI: 10.1158/1538-7445.Am2018-397  0.65
2017 Li Y, Sahni N, Pancsa R, McGrail DJ, Xu J, Hua X, Coulombe-Huntington J, Ryan M, Tychhon B, Sudhakar D, Hu L, Tyers M, Jiang X, Lin SY, Babu MM, ... Yi S, et al. Revealing the Determinants of Widespread Alternative Splicing Perturbation in Cancer. Cell Reports. 21: 798-812. PMID 29045845 DOI: 10.1016/J.Celrep.2017.09.071  0.657
2017 Yi S, Liu NN, Hu L, Wang H, Sahni N. Base-resolution stratification of cancer mutations using functional variomics. Nature Protocols. 12: 2323-2341. PMID 28981122 DOI: 10.1038/Nprot.2017.086  0.638
2017 Yi S, Sahni N. Regulome Networks and Mutational Landscape in Liver Cancer: An Informative Path to Precision Medicine. Hepatology (Baltimore, Md.). PMID 28422313 DOI: 10.1002/Hep.29220  0.599
2017 Yi S, Lin S, Li Y, Zhao W, Mills GB, Sahni N. Functional variomics and network perturbation: connecting genotype to phenotype in cancer. Nature Reviews. Genetics. PMID 28344341 DOI: 10.1038/Nrg.2017.8  0.67
2017 Karras GI, Yi S, Sahni N, Fischer M, Xie J, Vidal M, D'Andrea AD, Whitesell L, Lindquist S. HSP90 Shapes the Consequences of Human Genetic Variation. Cell. PMID 28215707 DOI: 10.1016/J.Cell.2017.01.023  0.603
2017 Chung CY, Khurana V, Yi S, Sahni N, Loh KH, Auluck PK, Baru V, Udeshi ND, Freyzon Y, Carr SA, Hill DE, Vidal M, Ting AY, Lindquist S. In Situ Peroxidase Labeling and Mass-Spectrometry Connects Alpha-Synuclein Directly to Endocytic Trafficking and mRNA Metabolism in Neurons. Cell Systems. PMID 28131823 DOI: 10.1016/J.Cels.2017.01.002  0.578
2017 Sahni N, Yi S. Abstract B03: Functional Stratification of Cancer Variants via Network Perturbations Molecular Cancer Therapeutics. 16. DOI: 10.1158/1538-8514.Synthleth-B03  0.663
2017 Yi S, Sahni N. Abstract 5556: Widespread protein interactome network rewiring in human cancer Cancer Research. 77: 5556-5556. DOI: 10.1158/1538-7445.Am2017-5556  0.667
2017 Sahni N, Yi S. Abstract 5555: Integrative network variomics reveals complex genotype to phenotype relationships in cancer Cancer Research. 77: 5555-5555. DOI: 10.1158/1538-7445.Am2017-5555  0.598
2016 Li Y, Sahni N, Yi S. Comparative analysis of protein interactome networks prioritizes candidate genes with cancer signatures. Oncotarget. PMID 27791983 DOI: 10.18632/Oncotarget.12879  0.644
2016 Yi S, Chen S, Zhang L, Sahni N. Signal Transduction and Regulation: Insights into Evolution. Biomed Research International. 2016: 8604245. PMID 27525280 DOI: 10.1155/2016/8604245  0.593
2016 Lin S, Yin YA, Jiang X, Sahni N, Yi S. Multi-OMICs and Genome Editing Perspectives on Liver Cancer Signaling Networks. Biomed Research International. 2016: 6186281. PMID 27403431 DOI: 10.1155/2016/6186281  0.631
2016 Yachie N, Petsalaki E, Mellor JC, Weile J, Jacob Y, Verby M, Ozturk SB, Li S, Cote AG, Mosca R, Knapp JJ, Ko M, Yu A, Gebbia M, Sahni N, ... Yi S, et al. Pooled-matrix protein interaction screens using Barcode Fusion Genetics. Molecular Systems Biology. 12: 863. PMID 27107012 DOI: 10.15252/Msb.20156660  0.589
2016 Barrera LA, Vedenko A, Kurland JV, Rogers JM, Gisselbrecht SS, Rossin EJ, Woodard J, Mariani L, Kock KH, Inukai S, Siggers T, Shokri L, Gordân R, Sahni N, Cotsapas C, ... ... Yi S, et al. Survey of variation in human transcription factors reveals prevalent DNA binding changes. Science (New York, N.Y.). 351: 1450-4. PMID 27013732 DOI: 10.1126/Science.Aad2257  0.571
2016 Sun S, Yang F, Tan G, Costanzo M, Oughtred R, Hirschman J, Theesfeld C, Bansal P, Sahni N, Yi S, Yu A, Tyagi T, Tie C, Hill DE, Vidal M, et al. An extended set of yeast-based functional assays accurately identifies human disease mutations. Genome Research. PMID 26975778 DOI: 10.1101/Gr.192526.115  0.612
2016 Yang X, Coulombe-Huntington J, Kang S, Sheynkman GM, Hao T, Richardson A, Sun S, Yang F, Shen YA, Murray RR, Spirohn K, Begg BE, Duran-Frigola M, MacWilliams A, Pevzner SJ, ... ... Yi S, et al. Widespread Expansion of Protein Interaction Capabilities by Alternative Splicing. Cell. 164: 805-817. PMID 26871637 DOI: 10.1016/J.Cell.2016.01.029  0.618
2015 Fuxman Bass JI, Sahni N, Shrestha S, Garcia-Gonzalez A, Mori A, Bhat N, Yi S, Hill DE, Vidal M, Walhout AJ. Human gene-centered transcription factor networks for enhancers and disease variants. Cell. 161: 661-73. PMID 25910213 DOI: 10.1016/J.Cell.2015.03.003  0.65
2015 Sahni N, Yi S, Taipale M, Fuxman Bass JI, Coulombe-Huntington J, Yang F, Peng J, Weile J, Karras GI, Wang Y, Kovács IA, Kamburov A, Krykbaeva I, Lam MH, Tucker G, et al. Widespread macromolecular interaction perturbations in human genetic disorders. Cell. 161: 647-60. PMID 25910212 DOI: 10.1016/J.Cell.2015.04.013  0.625
2014 Rolland T, TaÅŸan M, Charloteaux B, Pevzner SJ, Zhong Q, Sahni N, Yi S, Lemmens I, Fontanillo C, Mosca R, Kamburov A, Ghiassian SD, Yang X, Ghamsari L, Balcha D, et al. A proteome-scale map of the human interactome network. Cell. 159: 1212-26. PMID 25416956 DOI: 10.1016/J.Cell.2014.10.050  0.608
2014 Corominas R, Yang X, Lin GN, Kang S, Shen Y, Ghamsari L, Broly M, Rodriguez M, Tam S, Trigg SA, Fan C, Yi S, Tasan M, Lemmens I, Kuang X, et al. Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors for autism. Nature Communications. 5: 3650. PMID 24722188 DOI: 10.1038/Ncomms4650  0.345
2013 Sahni N, Yi S, Zhong Q, Jailkhani N, Charloteaux B, Cusick ME, Vidal M. Edgotype: a fundamental link between genotype and phenotype. Current Opinion in Genetics & Development. 23: 649-57. PMID 24287335 DOI: 10.1016/J.Gde.2013.11.002  0.64
2012 Srikantha T, Daniels KJ, Pujol C, Sahni N, Yi S, Soll DR. Nonsex genes in the mating type locus of Candida albicans play roles in a/α biofilm formation, including impermeability and fluconazole resistance. Plos Pathogens. 8: e1002476. PMID 22253594 DOI: 10.1371/Journal.Ppat.1002476  0.692
2011 Yi S, Sahni N, Daniels KJ, Lu KL, Srikantha T, Huang G, Garnaas AM, Soll DR. Alternative mating type configurations (a/α versus a/a or α/α) of Candida albicans result in alternative biofilms regulated by different pathways. Plos Biology. 9: e1001117. PMID 21829325 DOI: 10.1371/Journal.Pbio.1001117  0.682
2011 Yi S, Sahni N, Daniels KJ, Lu KL, Huang G, Srikantha T, Soll DR. Self-induction of a/a or alpha/alpha biofilms in Candida albicans is a pheromone-based paracrine system requiring switching. Eukaryotic Cell. 10: 753-60. PMID 21498642 DOI: 10.1128/Ec.05055-11  0.689
2011 Yi S, Sahni N, Daniels KJ, Lu KL, Huang G, Garnaas AM, Pujol C, Srikantha T, Soll DR. Utilization of the mating scaffold protein in the evolution of a new signal transduction pathway for biofilm development. Mbio. 2: e00237-10. PMID 21221248 DOI: 10.1128/Mbio.00237-10  0.705
2010 Sahni N, Yi S, Daniels KJ, Huang G, Srikantha T, Soll DR. Tec1 mediates the pheromone response of the white phenotype of Candida albicans: insights into the evolution of new signal transduction pathways. Plos Biology. 8: e1000363. PMID 20454615 DOI: 10.1371/Journal.Pbio.1000363  0.684
2010 Huang G, Yi S, Sahni N, Daniels KJ, Srikantha T, Soll DR. N-acetylglucosamine induces white to opaque switching, a mating prerequisite in Candida albicans. Plos Pathogens. 6: e1000806. PMID 20300604 DOI: 10.1371/Journal.Ppat.1000806  0.685
2010 Huang G, Yi S, Sahni N, Daniels KJ, Srikantha T, Soll DR. Correction: N-Acetylglucosamine Induces White to Opaque Switching, a Mating Prerequisite in Candida albicans Plos Pathogens. 6. DOI: 10.1371/Annotation/Ed4D1473-Cf80-4E85-Ad9D-7A390Be260F6  0.62
2009 Sahni N, Yi S, Daniels KJ, Srikantha T, Pujol C, Soll DR. Genes selectively up-regulated by pheromone in white cells are involved in biofilm formation in Candida albicans. Plos Pathogens. 5: e1000601. PMID 19798425 DOI: 10.1371/Journal.Ppat.1000601  0.697
2009 Huang G, Srikantha T, Sahni N, Yi S, Soll DR. CO(2) regulates white-to-opaque switching in Candida albicans. Current Biology : Cb. 19: 330-4. PMID 19200725 DOI: 10.1016/J.Cub.2009.01.018  0.685
2009 Yi S, Sahni N, Pujol C, Daniels KJ, Srikantha T, Ma N, Soll DR. A Candida albicans-specific region of the alpha-pheromone receptor plays a selective role in the white cell pheromone response. Molecular Microbiology. 71: 925-47. PMID 19170873 DOI: 10.1111/J.1365-2958.2008.06575.X  0.682
2009 Sahni N, Yi S, Pujol C, Soll DR. The white cell response to pheromone is a general characteristic of Candida albicans strains. Eukaryotic Cell. 8: 251-6. PMID 19074600 DOI: 10.1128/Ec.00320-08  0.662
2008 Srikantha T, Daniels KJ, Wu W, Lockhart SR, Yi S, Sahni N, Ma N, Soll DR. Dark brown is the more virulent of the switch phenotypes of Candida glabrata. Microbiology (Reading, England). 154: 3309-18. PMID 18957584 DOI: 10.1099/Mic.0.2008/020578-0  0.667
2008 Yi S, Sahni N, Daniels KJ, Pujol C, Srikantha T, Soll DR. The same receptor, G protein, and mitogen-activated protein kinase pathway activate different downstream regulators in the alternative white and opaque pheromone responses of Candida albicans. Molecular Biology of the Cell. 19: 957-70. PMID 18162580 DOI: 10.1091/Mbc.E07-07-0688  0.7
2006 Srikantha T, Borneman AR, Daniels KJ, Pujol C, Wu W, Seringhaus MR, Gerstein M, Yi S, Snyder M, Soll DR. TOS9 regulates white-opaque switching in Candida albicans. Eukaryotic Cell. 5: 1674-87. PMID 16950924 DOI: 10.1128/Ec.00252-06  0.543
2006 Wessels D, Srikantha T, Yi S, Kuhl S, Aravind L, Soll DR. The Shwachman-Bodian-Diamond syndrome gene encodes an RNA-binding protein that localizes to the pseudopod of Dictyostelium amoebae during chemotaxis. Journal of Cell Science. 119: 370-9. PMID 16410554 DOI: 10.1242/Jcs.02753  0.575
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