Shailja Pathania, Ph.D. - Related publications

2002 University of Texas at Austin, Austin, Texas, U.S.A. 
Molecular Biology, Microbiology Biology
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Kumari S, Sharma S, Advani D, Khosla A, Kumar P, Ambasta RK. Unboxing the molecular modalities of mutagens in cancer. Environ Sci Pollut Res Int.. PMID 34611806 DOI: doi: 10.1007/s11356-021-16726-w   
2021 Paulsen T, Malapati P, Shibata Y, Wilson B, Eki R, Benamar M, Abbas T, Dutta A. MicroDNA levels are dependent on MMEJ, repressed by c-NHEJ pathway, and stimulated by DNA damage. Nucleic Acids Research. 49: 11787-11799. PMID 34718766 DOI: 10.1093/nar/gkab984   
2021 Chen S, Lees-Miller JP, He Y, Lees-Miller SP. Structural insights into the role of DNA-PK as a master regulator in NHEJ. Genome Instability & Disease. 2: 195-210. PMID 34723130 DOI: 10.1007/s42764-021-00047-w   
2021 Lee C, Kim YJ, Kim KS, Lee JY, Kim DN. Modulating the chemo-mechanical response of structured DNA assemblies through binding molecules. Nucleic Acids Research. PMID 34850119 DOI: 10.1093/nar/gkab1119   
2021 Vaziri C, Rogozin IB, Gu Q, Wu D, Day TA. Unravelling roles of error-prone DNA polymerases in shaping cancer genomes. Oncogene. PMID 34663880 DOI: 10.1038/s41388-021-02032-9   
2021 Zheng M, Li Z, Liu L, Li M, Paluzzi VE, Hyun Choi J, Mao C. Kinetic DNA Self-Assembly: Simultaneously Co-folding Complementary DNA Strands into Identical Nanostructures. Journal of the American Chemical Society. PMID 34808053 DOI: 10.1021/jacs.1c09925   
2021 Liu J, Mei Q, Nimer S, Fitzgerald DM, Rosenberg SM. Genomic mapping of DNA-repair reaction intermediates in living cells with engineered DNA structure-trap proteins. Methods in Enzymology. 661: 155-181. PMID 34776211 DOI: 10.1016/bs.mie.2021.09.015   
2021 Swan RL, Cowell IG, Austin CA. . Molecular Pharmacology. PMID 34689119 DOI: 10.1124/molpharm.121.000374   
2021 Katerji M, Duerksen-Hughes PJ. DNA damage in cancer development: special implications in viral oncogenesis. American Journal of Cancer Research. 11: 3956-3979. PMID 34522461   
2021 Nitiss JL, Kiianitsa K, Sun Y, Nitiss KC, Maizels N. Topoisomerase Assays. Current Protocols. 1: e250. PMID 34606690 DOI: 10.1002/cpz1.250   
2021 Son H, Park J, Hwang I, Jung Y, Bae S, Lee S. Mg-dependent conformational rearrangements of CRISPR-Cas12a R-loop complex are mandatory for complete double-stranded DNA cleavage. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34853172 DOI: 10.1073/pnas.2113747118   
2021 Cejka P, Symington LS. DNA End Resection: Mechanism and Control. Annual Review of Genetics. 55: 285-307. PMID 34813349 DOI: 10.1146/annurev-genet-071719-020312   
2021 Kang Z, Fu P, Alcivar AL, Fu H, Redon C, Foo TK, Zuo Y, Ye C, Baxley R, Madireddy A, Buisson R, Bielinsky AK, Zou L, Shen Z, Aladjem MI, et al. BRCA2 associates with MCM10 to suppress PRIMPOL-mediated repriming and single-stranded gap formation after DNA damage. Nature Communications. 12: 5966. PMID 34645815 DOI: 10.1038/s41467-021-26227-6   
2021 Li J, Liang W, Liu Y, Ren Z, Ci D, Chang J, Qian W. The Arabidopsis ATR-SOG1 signaling module regulates pleiotropic developmental adjustments in response to 3'-blocked DNA repair intermediates. The Plant Cell. PMID 34791445 DOI: 10.1093/plcell/koab282   
2021 Chen Y, Li Y, Xiong J, Lan B, Wang X, Liu J, Lin J, Fei Z, Zheng X, Chen C. Role of PRKDC in cancer initiation, progression, and treatment. Cancer Cell International. 21: 563. PMID 34702253 DOI: 10.1186/s12935-021-02229-8   
2021 Zhang S, Zhou T, Wang Z, Yi F, Li C, Guo W, Xu H, Cui H, Dong X, Liu J, Song X, Cao L. Post-Translational Modifications of PCNA in Control of DNA Synthesis and DNA Damage Tolerance-the Implications in Carcinogenesis. International Journal of Biological Sciences. 17: 4047-4059. PMID 34671219 DOI: 10.7150/ijbs.64628   
2021 Zagoskin MV, Wang J. Programmed DNA elimination: silencing genes and repetitive sequences in somatic cells. Biochemical Society Transactions. 49: 1891-1903. PMID 34665225 DOI: 10.1042/BST20190951   
2021 Salerno D, Marrano CA, Cassina V, Cristofalo M, Shao Q, Finzi L, Mantegazza F, Dunlap D. Nanomechanics of negatively supercoiled diaminopurine-substituted DNA. Nucleic Acids Research. PMID 34718727 DOI: 10.1093/nar/gkab982   
2021 Li J, Li J, Yan Z, Ding XL, Xia XH. Revealing the Hydrogen Bonding Interaction of DNA with Unnatural Bases via Plasmonic Antenna Enhanced Infrared Spectroscopy. The Journal of Physical Chemistry Letters. 12: 10255-10261. PMID 34652166 DOI: 10.1021/acs.jpclett.1c02901   
2021 Ge J, Qiu X. Expression, purification, characterization of DNA binding activity and crystallization of a putative type II DNA Cytosine-5-methyltransferase from Microcystis aeruginosa. Protein Expression and Purification. 189: 105988. PMID 34634480 DOI: 10.1016/j.pep.2021.105988   
2021 Gabriel P, Maranha FG, Nordlander E, Neves A, Terenzi H. A heterotrinuclear bioinspired coordination complex capable of binding to DNA and emulation of nuclease activity. Journal of Inorganic Biochemistry. 226: 111631. PMID 34717251 DOI: 10.1016/j.jinorgbio.2021.111631   
2021 Li J, Sun C, Lin Y, Zhi H, Fu Y, Liu Z. The interaction of proanthocyanidins with DNA molecules studied by atomic force microscopy and spectroscopic method. Ultramicroscopy. 230: 113393. PMID 34607224 DOI: 10.1016/j.ultramic.2021.113393   
2021 Son H, Bae S, Lee S. A thermodynamic understanding of the salt-induced B-to-Z transition of DNA containing BZ junctions. Biochemical and Biophysical Research Communications. 583: 142-145. PMID 34735876 DOI: 10.1016/j.bbrc.2021.10.065   
2021 Thakur BL, Ray A, Redon CE, Aladjem MI. Preventing excess replication origin activation to ensure genome stability. Trends in Genetics : Tig. PMID 34625299 DOI: 10.1016/j.tig.2021.09.008   
2021 Boucher D, Kariawasam R, Burgess J, Gimenez A, Ocampo TE, Ferguson B, Naqi A, Walker GJ, Bolderson E, Gamsjaeger R, O'Byrne KJ, Cubeddu L, Khanna KK, Richard DJ. hSSB2 (NABP1) is required for the recruitment of RPA during the cellular response to DNA UV damage. Scientific Reports. 11: 20256. PMID 34642383 DOI: 10.1038/s41598-021-99355-0   
2021 Meier B, Volkova NV, Wang B, González-Huici V, Bertolini S, Campbell PJ, Gerstung M, Gartner A. C. elegans genome-wide analysis reveals DNA repair pathways that act cooperatively to preserve genome integrity upon ionizing radiation. Plos One. 16: e0258269. PMID 34614038 DOI: 10.1371/journal.pone.0258269   
2021 Ma W, Zhan Y, Zhang Y, Mao C, Xie X, Lin Y. The biological applications of DNA nanomaterials: current challenges and future directions. Signal Transduction and Targeted Therapy. 6: 351. PMID 34620843 DOI: 10.1038/s41392-021-00727-9   
2021 Nathansen J, Meyer F, Müller L, Schmitz M, Borgmann K, Dubrovska A. Beyond the Double-Strand Breaks: The Role of DNA Repair Proteins in Cancer Stem-Cell Regulation. Cancers. 13. PMID 34638302 DOI: 10.3390/cancers13194818   
2021 James RC, Bellani MA, Zhang J, Huang J, Shaik A, Pokharel D, Gali H, Gichimu J, Thazhathveetil AK, Seidman MM. Visualizing replication fork encounters with DNA interstrand crosslinks. Methods in Enzymology. 661: 53-75. PMID 34776223 DOI: 10.1016/bs.mie.2021.08.015   
2021 Li Y, Pei J, Lu X, Jiao Y, Liu F, Wu X, Liu J, Ding B. Hierarchical Assembly of Super-DNA Origami Based on a Flexible and Covalent-Bound Branched DNA Structure. Journal of the American Chemical Society. PMID 34783532 DOI: 10.1021/jacs.1c09472   
2021 Zhang R, Lai W, Wang H. Quantification of Epigenetic DNA Modifications in the Subchromatin Structure Matrix Attachment Regions by Stable Isotope Dilution UHPLC-MS/MS Analysis. Analytical Chemistry. PMID 34783527 DOI: 10.1021/acs.analchem.1c04151   
2021 Muzzopappa F, Hertzog M, Erdel F. DNA length tunes the fluidity of DNA-based condensates. Biophysical Journal. 120: 1288-1300. PMID 33640380 DOI: 10.1016/j.bpj.2021.02.027   
2021 Bae S, Kim JS. Potential of Mean Force for DNA Wrapping Around a Cationic Nanoparticle. Journal of Chemical Theory and Computation. PMID 34792353 DOI: 10.1021/acs.jctc.1c00797   
2021 Costa PM. Current aspects of DNA damage and repair in ecotoxicology: a mini-review. Ecotoxicology (London, England). PMID 34623548 DOI: 10.1007/s10646-021-02487-2   
2021 Bindu Ramesan A, Vittala SK, Joseph J. DNA condensation and formation of ultrathin nanosheets via DNA assisted self-assembly of an amphiphilic fullerene derivative. Journal of Photochemistry and Photobiology. B, Biology. 226: 112352. PMID 34798504 DOI: 10.1016/j.jphotobiol.2021.112352   
2021 Park S, Kim YJ, Huh HJ, Chung HS, Lee M, Park YM, Mun YC, Seong CM, Huh J. Comprehensive DNA repair gene expression analysis and its prognostic significance in acute myeloid leukemia. Hematology (Amsterdam, Netherlands). 26: 904-913. PMID 34789078 DOI: 10.1080/16078454.2021.1997196   
2021 Kunisky AK, Anyaeche VI, Herron RS, Park CY, Hwang HW. Shift in MSL1 alternative polyadenylation in response to DNA damage protects cancer cells from chemotherapeutic agent-induced apoptosis. Cell Reports. 37: 109815. PMID 34644577 DOI: 10.1016/j.celrep.2021.109815   
2021 Mani C, Acharya G, Kshirsagar S, Vijayan M, Khan H, Hemachandra Reddy P, Palle K. A Novel Role for BRIP1/FANCJ in Neuronal Cells Health and in Resolving Oxidative Stress-Induced DNA Lesions. Journal of Alzheimer's Disease : Jad. PMID 34776453 DOI: 10.3233/JAD-215305   
2021 Thornbury D, Goray M, van Oorschot RAH. Transfer of DNA without contact from used clothing, pillowcases and towels by shaking agitation. Science & Justice : Journal of the Forensic Science Society. 61: 797-805. PMID 34802654 DOI: 10.1016/j.scijus.2021.10.005   
2021 Cappadocia L, Kochańczyk T, Lima CD. DNA asymmetry promotes SUMO modification of the single-stranded DNA-binding protein RPA. The Embo Journal. e103787. PMID 34585421 DOI: 10.15252/embj.2019103787   
2021 Byrd AK, Malone EG, Hazeslip L, Zafar MK, Harrison DK, Thompson MD, Gao J, Perumal SK, Marecki JC, Raney KD. A structural feature of Dda helicase which enhances displacement of streptavidin and trp repressor from DNA. Protein Science : a Publication of the Protein Society. PMID 34761452 DOI: 10.1002/pro.4232   
2021 Pappalardi MB, Keenan K, Cockerill M, Kellner WA, Stowell A, Sherk C, Wong K, Pathuri S, Briand J, Steidel M, Chapman P, Groy A, Wiseman AK, McHugh CF, Campobasso N, et al. Discovery of a first-in-class reversible DNMT1-selective inhibitor with improved tolerability and efficacy in acute myeloid leukemia. Nature Cancer. 2: 1002-1017. PMID 34790902   
2021 Zhang Y, Feng Y, Liang Y, Yang J, Zhang C. Development of Synthetic DNA Circuit and Networks for Molecular Information Processing. Nanomaterials (Basel, Switzerland). 11. PMID 34835719 DOI: 10.3390/nano11112955   
2021 Peraza-Vega RI, Valverde M, Rojas E. miR-27b-3p a Negative Regulator of DSB-DNA Repair. Genes. 12. PMID 34573315 DOI: 10.3390/genes12091333   
2021 Sarkar R, Petrushenko ZM, Dawson DS, Rybenkov VV. Ycs4 Subunit of Condensin Binds DNA and Modulates the Enzyme Turnover. Biochemistry. PMID 34723504 DOI: 10.1021/acs.biochem.1c00473   
2021 Yao C, Zhang R, Tang J, Yang D. Rolling circle amplification (RCA)-based DNA hydrogel. Nature Protocols. PMID 34716450 DOI: 10.1038/s41596-021-00621-2   
2021 Yoo J, Park S, Maffeo C, Ha T, Aksimentiev A. DNA sequence and methylation prescribe the inside-out conformational dynamics and bending energetics of DNA minicircles. Nucleic Acids Research. PMID 34718725 DOI: 10.1093/nar/gkab967   
2021 Nickoloff JA, Sharma N, Taylor L, Allen SJ, Hromas R. The Safe Path at the Fork: Ensuring Replication-Associated DNA Double-Strand Breaks are Repaired by Homologous Recombination. Frontiers in Genetics. 12: 748033. PMID 34646312 DOI: 10.3389/fgene.2021.748033   
2021 Lin Y, Zhang X, Wang Y, Zhang J, Liu Q. Single-stranded DNA generated by high temperature accepts protons and builds up mutagenic and carcinogenic strong acids. Molecular Biology Reports. PMID 34643928 DOI: 10.1007/s11033-021-06804-0   
2021 Singh JK, Smith R, Rother MB, de Groot AJL, Wiegant WW, Vreeken K, D'Augustin O, Kim RQ, Qian H, Krawczyk PM, González-Prieto R, Vertegaal ACO, Lamers M, Huet S, van Attikum H. Zinc finger protein ZNF384 is an adaptor of Ku to DNA during classical non-homologous end-joining. Nature Communications. 12: 6560. PMID 34772923 DOI: 10.1038/s41467-021-26691-0