Gerben J. Zylstra - Publications

Affiliations: 
Rutgers University, New Brunswick, New Brunswick, NJ, United States 
Area:
Molecular Biology, Environmental Sciences, Environmental Engineering, Microbiology Biology

69 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Cheng M, Qian Y, Xing Z, Zylstra GJ, Huang X. The low-nanomolar 4-nitrobenzoate-responsive repressor PnbX negatively regulates the actinomycete-derived 4-nitrobenzoate-degrading pnb locus. Environmental Microbiology. PMID 34554625 DOI: 10.1111/1462-2920.15787  0.311
2021 Mutter TY, Zylstra GJ. Differential Roles of Three Different Upper Pathway Ring Cleavage Product Hydrolases in the Degradation of Dibenzo--dioxin and Dibenzofuran by RW1. Applied and Environmental Microbiology. AEM0106721. PMID 34469199 DOI: 10.1128/AEM.01067-21  0.374
2021 Mutter TY, Zylstra GJ. Separate Upper Pathway Ring Cleavage Dioxygenases Are Required for Growth of RW1 on Dibenzofuran and Dibenzo--dioxin. Applied and Environmental Microbiology. PMID 33741618 DOI: 10.1128/AEM.02464-20  0.367
2020 Chai B, Tsoi T, Sallach JB, Liu C, Landgraf J, Bezdek M, Zylstra G, Li H, Johnston CT, Teppen BJ, Cole JR, Boyd SA, Tiedje JM. Bioavailability of clay-adsorbed dioxin to Sphingomonas wittichii RW1 and its associated genome-wide shifts in gene expression. The Science of the Total Environment. 712: 135525. PMID 32050392 DOI: 10.1016/J.Scitotenv.2019.135525  0.346
2017 Ahn E, Choi KY, Kang BS, Zylstra GJ, Kim D, Kim E. Salicylate degradation by a cold-adapted Pseudomonas sp. Annals of Microbiology. 67: 417-424. DOI: 10.1007/S13213-017-1273-3  0.314
2016 Chai B, Tsoi TV, Iwai S, Liu C, Fish JA, Gu C, Johnson TA, Zylstra G, Teppen BJ, Li H, Hashsham SA, Boyd SA, Cole JR, Tiedje JM. Sphingomonas wittichii Strain RW1 Genome-Wide Gene Expression Shifts in Response to Dioxins and Clay. Plos One. 11: e0157008. PMID 27309357 DOI: 10.1371/Journal.Pone.0157008  0.355
2014 Masuda H, Shiwa Y, Yoshikawa H, Zylstra GJ. Draft Genome Sequence of the Versatile Alkane-Degrading Bacterium Aquabacterium sp. Strain NJ1. Genome Announcements. 2. PMID 25477416 DOI: 10.1128/Genomea.01271-14  0.534
2013 Theisen J, Zylstra GJ, Yee N. Genetic evidence for a molybdopterin-containing tellurate reductase. Applied and Environmental Microbiology. 79: 3171-5. PMID 23475618 DOI: 10.1128/Aem.03996-12  0.31
2012 Masuda H, McClay K, Steffan RJ, Zylstra GJ. Biodegradation of tetrahydrofuran and 1,4-dioxane by soluble diiron monooxygenase in Pseudonocardia sp. strain ENV478. Journal of Molecular Microbiology and Biotechnology. 22: 312-6. PMID 23147387 DOI: 10.1159/000343817  0.606
2012 Masuda H, McClay K, Steffan RJ, Zylstra GJ. Characterization of three propane-inducible oxygenases in Mycobacterium sp. strain ENV421. Letters in Applied Microbiology. 55: 175-81. PMID 22803623 DOI: 10.1111/J.1472-765X.2012.03290.X  0.608
2009 Sul WJ, Park J, Quensen JF, Rodrigues JL, Seliger L, Tsoi TV, Zylstra GJ, Tiedje JM. DNA-stable isotope probing integrated with metagenomics for retrieval of biphenyl dioxygenase genes from polychlorinated biphenyl-contaminated river sediment. Applied and Environmental Microbiology. 75: 5501-6. PMID 19648381 DOI: 10.1128/Aem.00121-09  0.362
2009 Ahn YB, Chae JC, Zylstra GJ, Häggblom MM. Degradation of phenol via phenylphosphate and carboxylation to 4-hydroxybenzoate by a newly isolated strain of the sulfate-reducing bacterium Desulfobacterium anilini. Applied and Environmental Microbiology. 75: 4248-53. PMID 19411421 DOI: 10.1128/Aem.00203-09  0.398
2009 Schuler L, Jouanneau Y, Chadhain SM, Meyer C, Pouli M, Zylstra GJ, Hols P, Agathos SN. Characterization of a ring-hydroxylating dioxygenase from phenanthrene-degrading Sphingomonas sp. strain LH128 able to oxidize benz[a]anthracene. Applied Microbiology and Biotechnology. 83: 465-75. PMID 19172265 DOI: 10.1007/S00253-009-1858-2  0.321
2008 Chae JC, Song B, Zylstra GJ. Identification of genes coding for hydrolytic dehalogenation in the metagenome derived from a denitrifying 4-chlorobenzoate degrading consortium. Fems Microbiology Letters. 281: 203-9. PMID 18355280 DOI: 10.1111/J.1574-6968.2008.01106.X  0.351
2008 Schuler L, Ní Chadhain SM, Jouanneau Y, Meyer C, Zylstra GJ, Hols P, Agathos SN. Characterization of a novel angular dioxygenase from fluorene-degrading Sphingomonas sp. strain LB126. Applied and Environmental Microbiology. 74: 1050-7. PMID 18156320 DOI: 10.1128/Aem.01627-07  0.327
2008 Callaghan AV, Wawrik B, Ní Chadhain SM, Young LY, Zylstra GJ. Anaerobic alkane-degrading strain AK-01 contains two alkylsuccinate synthase genes. Biochemical and Biophysical Research Communications. 366: 142-8. PMID 18053803 DOI: 10.1016/J.Bbrc.2007.11.094  0.327
2007 Perry LL, Zylstra GJ. Cloning of a gene cluster involved in the catabolism of p-nitrophenol by Arthrobacter sp. strain JS443 and characterization of the p-nitrophenol monooxygenase. Journal of Bacteriology. 189: 7563-72. PMID 17720792 DOI: 10.1128/Jb.01849-06  0.702
2007 Chadhain SM, Moritz EM, Kim E, Zylstra GJ. Identification, cloning, and characterization of a multicomponent biphenyl dioxygenase from Sphingobium yanoikuyae B1. Journal of Industrial Microbiology & Biotechnology. 34: 605-13. PMID 17647036 DOI: 10.1007/S10295-007-0235-3  0.443
2007 Chae JC, Kim E, Bini E, Zylstra GJ. Comparative analysis of the catechol 2,3-dioxygenase gene locus in thermoacidophilic archaeon Sulfolobus solfataricus strain 98/2. Biochemical and Biophysical Research Communications. 357: 815-9. PMID 17451650 DOI: 10.1016/J.Bbrc.2007.04.027  0.382
2007 Choi KY, Kim D, Chae JC, Zylstra GJ, Kim E. Requirement of duplicated operons for maximal metabolism of phthalate by Rhodococcus sp. strain DK17. Biochemical and Biophysical Research Communications. 357: 766-71. PMID 17449009 DOI: 10.1016/J.Bbrc.2007.04.009  0.363
2007 Yano H, Garruto CE, Sota M, Ohtsubo Y, Nagata Y, Zylstra GJ, Williams PA, Tsuda M. Complete sequence determination combined with analysis of transposition/site-specific recombination events to explain genetic organization of IncP-7 TOL plasmid pWW53 and related mobile genetic elements. Journal of Molecular Biology. 369: 11-26. PMID 17408691 DOI: 10.1016/J.Jmb.2007.02.098  0.3
2007 Rhine ED, Ní Chadhain SM, Zylstra GJ, Young LY. The arsenite oxidase genes (aroAB) in novel chemoautotrophic arsenite oxidizers Biochemical and Biophysical Research Communications. 354: 662-667. PMID 17257587 DOI: 10.1016/J.Bbrc.2007.01.004  0.352
2007 Bae HW, Kim D, Choi KY, Kwon NR, Chae JC, Zylstra GJ, Koh SC, Lee CH, Kim E. Functional identification of p-cumate operons in the terpene-degrading Rhodococcus sp. strain T104. Fems Microbiology Letters. 266: 54-9. PMID 17233717 DOI: 10.1111/J.1574-6968.2006.00497.X  0.343
2007 Yu CL, Liu W, Ferraro DJ, Brown EN, Parales JV, Ramaswamy S, Zylstra GJ, Gibson DT, Parales RE. Purification, characterization, and crystallization of the components of a biphenyl dioxygenase system from Sphingobium yanoikuyae B1. Journal of Industrial Microbiology & Biotechnology. 34: 311-24. PMID 17211635 DOI: 10.1007/S10295-006-0199-8  0.588
2007 Choi KY, Zylstra GJ, Kim E. Benzoate catabolite repression of the phthalate degradation pathway in Rhodococcus sp. strain DK17. Applied and Environmental Microbiology. 73: 1370-4. PMID 17158614 DOI: 10.1128/Aem.02379-06  0.34
2007 Kim D, Lee JS, Choi KY, Kim YS, Choi JN, Kim SK, Chae JC, Zylstra GJ, Lee CH, Kim E. Effect of functional groups on the regioselectivity of a novel o-xylene dioxygenase from Rhodococcus sp. strain DK17 Enzyme and Microbial Technology. 41: 221-225. DOI: 10.1016/J.Enzmictec.2007.01.021  0.306
2006 Ní Chadhain SM, Schaefer JK, Crane S, Zylstra GJ, Barkay T. Analysis of mercuric reductase (merA) gene diversity in an anaerobic mercury-contaminated sediment enrichment. Environmental Microbiology. 8: 1746-52. PMID 16958755 DOI: 10.1111/J.1462-2920.2006.01114.X  0.305
2006 Vainberg S, McClay K, Masuda H, Root D, Condee C, Zylstra GJ, Steffan RJ. Biodegradation of ether pollutants by Pseudonocardia sp. strain ENV478. Applied and Environmental Microbiology. 72: 5218-24. PMID 16885268 DOI: 10.1128/Aem.00160-06  0.565
2006 Ní Chadhain SM, Norman RS, Pesce KV, Kukor JJ, Zylstra GJ. Microbial dioxygenase gene population shifts during polycyclic aromatic hydrocarbon biodegradation. Applied and Environmental Microbiology. 72: 4078-87. PMID 16751518 DOI: 10.1128/Aem.02969-05  0.811
2005 Choi KY, Kim D, Sul WJ, Chae JC, Zylstra GJ, Kim YM, Kim E. Molecular and biochemical analysis of phthalate and terephthalate degradation by Rhodococcus sp. strain DK17. Fems Microbiology Letters. 252: 207-13. PMID 16181748 DOI: 10.1016/J.Femsle.2005.08.045  0.403
2005 Jang JY, Kim D, Bae HW, Choi KY, Chae JC, Zylstra GJ, Kim YM, Kim E. Isolation and characterization of a rhodococcus species strain able to grow on ortho- and para-xylene. Journal of Microbiology (Seoul, Korea). 43: 325-30. PMID 16145546  0.464
2005 Cho O, Choi KY, Zylstra GJ, Kim YS, Kim SK, Lee JH, Sohn HY, Kwon GS, Kim YM, Kim E. Catabolic role of a three-component salicylate oxygenase from Sphingomonas yanoikuyae B1 in polycyclic aromatic hydrocarbon degradation. Biochemical and Biophysical Research Communications. 327: 656-62. PMID 15649397 DOI: 10.1016/J.Bbrc.2004.12.060  0.402
2005 Kim D, Chae JC, Jang JY, Zylstra GJ, Kim YM, Kang BS, Kim E. Functional characterization and molecular modeling of methylcatechol 2,3-dioxygenase from o-xylene-degrading Rhodococcus sp. strain DK17. Biochemical and Biophysical Research Communications. 326: 880-6. PMID 15607751 DOI: 10.1016/J.Bbrc.2004.11.123  0.388
2004 Kim D, Chae JC, Zylstra GJ, Kim YS, Kim SK, Nam MH, Kim YM, Kim E. Identification of a novel dioxygenase involved in metabolism of o-xylene, toluene, and ethylbenzene by Rhodococcus sp. strain DK17. Applied and Environmental Microbiology. 70: 7086-92. PMID 15574904 DOI: 10.1128/Aem.70.12.7086-7092.2004  0.4
2004 Dennis JJ, Zylstra GJ. Complete sequence and genetic organization of pDTG1, the 83 kilobase naphthalene degradation plasmid from Pseudomonas putida strain NCIB 9816-4. Journal of Molecular Biology. 341: 753-68. PMID 15288784 DOI: 10.1016/J.Jmb.2004.06.034  0.387
2004 Palleroni NJ, Port AM, Chang HK, Zylstra GJ. Hydrocarboniphaga effusa gen. nov., sp. nov., a novel member of the gamma-Proteobacteria active in alkane and aromatic hydrocarbon degradation. International Journal of Systematic and Evolutionary Microbiology. 54: 1203-7. PMID 15280292 DOI: 10.1099/Ijs.0.03016-0  0.344
2003 Chang HK, Mohseni P, Zylstra GJ. Characterization and regulation of the genes for a novel anthranilate 1,2-dioxygenase from Burkholderia cepacia DBO1. Journal of Bacteriology. 185: 5871-81. PMID 13129960 DOI: 10.1128/Jb.185.19.5871-5881.2003  0.437
2003 Kim D, Kim YS, Jung JW, Zylstra GJ, Kim YM, Kim SK, Kim E. Regioselective oxidation of xylene isomers by Rhodococcus sp. strain DK17. Fems Microbiology Letters. 223: 211-4. PMID 12829288 DOI: 10.1016/S0378-1097(03)00379-3  0.311
2003 Park W, Jeon CO, Hohnstock-Ashe AM, Winans SC, Zylstra GJ, Madsen EL. Identification and characterization of the conjugal transfer region of the pCg1 plasmid from naphthalene-degrading Pseudomonas putida Cg1. Applied and Environmental Microbiology. 69: 3263-71. PMID 12788725 DOI: 10.1128/Aem.69.6.3263-3271.2003  0.35
2002 Park W, Padmanabhan P, Padmanabhan S, Zylstra GJ, Madsen EL. nahR, encoding a LysR-type transcriptional regulator, is highly conserved among naphthalene-degrading bacteria isolated from a coal tar waste-contaminated site and in extracted community DNA. Microbiology (Reading, England). 148: 2319-29. PMID 12177326 DOI: 10.1099/00221287-148-8-2319  0.398
2002 Kim D, Kim YS, Kim SK, Kim SW, Zylstra GJ, Kim YM, Kim E. Monocyclic aromatic hydrocarbon degradation by Rhodococcus sp. strain DK17. Applied and Environmental Microbiology. 68: 3270-8. PMID 12089003 DOI: 10.1128/Aem.68.7.3270-3278.2002  0.362
2001 Daane LL, Harjono I, Zylstra GJ, Häggblom MM. Isolation and Characterization of Polycyclic Aromatic Hydrocarbon-Degrading Bacteria Associated with the Rhizosphere of Salt Marsh Plants Applied and Environmental Microbiology. 67: 2683-2691. PMID 11375181 DOI: 10.1128/Aem.67.6.2683-2691.2001  0.365
2000 Chae JC, Kim Y, Kim YC, Zylstra GJ, Kim CK. Genetic structure and functional implication of the fcb gene cluster for hydrolytic dechlorination of 4-chlorobenzoate from Pseudomonas sp. DJ-12 Gene. 258: 109-116. PMID 11111048 DOI: 10.1016/S0378-1119(00)00419-4  0.329
2000 Bick JA, Dennis JJ, Zylstra GJ, Nowack J, Leustek T. Identification of a new class of 5'-adenylylsulfate (APS) reductases from sulfate-assimilating bacteria Journal of Bacteriology. 182: 135-142. PMID 10613872 DOI: 10.1128/Jb.182.1.135-142.2000  0.309
2000 Song J, Sung J, Kim YM, Zylstra GJ, Kim E. Roles of the meta- and the ortho-Cleavage Pathways for the Efficient Utilization of Aromatic Hydrocarbons by Sphingomonas yanoikuyae B1 Journal of Microbiology. 38: 245-249.  0.357
1999 Chang HK, Zylstra GJ. Characterization of the phthalate permease OphD from Burkholderia cepacia ATCC 17616 Journal of Bacteriology. 181: 6197-6199. PMID 10498738 DOI: 10.1128/Jb.181.19.6197-6199.1999  0.316
1999 Chang HK, Zylstra GJ. Role of quinolinate phosphoribosyl transferase in degradation of phthalate by Burkholderia cepacia DBO1 Journal of Bacteriology. 181: 3069-3075. PMID 10322007 DOI: 10.1128/Jb.181.10.3069-3075.1999  0.394
1999 Kim E, Zylstra GJ. Functional analysis of genes involved in biphenyl, naphthalenes, phenanthrene, and m-xylene degradation by Sphingomonas yanoikuyae b1 Journal of Industrial Microbiology and Biotechnology. 23: 294-302. DOI: 10.1038/Sj.Jim.2900724  0.361
1998 Chang HK, Zylstra GJ. Novel organization of the genes for phthalate degradation from Burkholderia cepacia DBO1 Journal of Bacteriology. 180: 6529-6537. PMID 9851995 DOI: 10.1128/Jb.180.24.6529-6537.1998  0.386
1997 Goyal AK, Zylstra GJ. Genetics of naphthalene and phenanthrene degradation by Comamonas testosteroni Journal of Industrial Microbiology and Biotechnology. 19: 401-407. PMID 9451837 DOI: 10.1038/Sj.Jim.2900476  0.412
1997 Kim E, Zylstra GJ, Freeman JP, Heinze TM, Deck J, Cerniglia CE. Evidence for the role of 2-hydroxychromene-2-carboxylate isomerase in the degradation of anthracene by Sphingomonas yanoikuyae B1. Fems Microbiology Letters. 153: 479-84. PMID 9303884 DOI: 10.1111/J.1574-6968.1997.Tb12613.X  0.315
1997 Zylstra GJ, Kim E. Aromatic hydrocarbon degradation by Sphingomonas yanoikuyae B1 Journal of Industrial Microbiology and Biotechnology. 19: 408-414. DOI: 10.1038/Sj.Jim.2900475  0.326
1996 Goyal AK, Zylstra GJ. Molecular cloning of novel genes for polycyclic aromatic hydrocarbon degradation from Comamonas testosteroni GZ39 Applied and Environmental Microbiology. 62: 230-236. PMID 8572701 DOI: 10.1128/Aem.62.1.230-236.1996  0.397
1995 Wang YZ, Zhou Y, Zylstra GJ. Molecular analysis of isophthalate and terephthalate degradation by comamonas testosteroni YZW-D Environmental Health Perspectives. 103: 9-12. PMID 8565920 DOI: 10.1289/Ehp.95103S49  0.344
1995 Yabannavar AV, Zylstra GJ. Cloning and characterization of the genes for p-nitrobenzoate degradation from Pseudomonas pickettii YH105 Applied and Environmental Microbiology. 61: 4284-4290. PMID 8534095 DOI: 10.1128/Aem.61.12.4284-4290.1995  0.336
1995 Kim E, Zylstra GJ. Molecular and biochemical characterization of two meta-cleavage dioxygenases involved in biphenyl and m-xylene degradation by Beijerinckia sp. strain B1 Journal of Bacteriology. 177: 3095-3103. PMID 7768806 DOI: 10.1128/Jb.177.11.3095-3103.1995  0.419
1994 Zylstra GJ, Wang XP, Kim E, Didolkar VA. Cloning and analysis of the genes for polycyclic aromatic hydrocarbon degradation Annals of the New York Academy of Sciences. 721: 386-398. PMID 8010687 DOI: 10.1111/J.1749-6632.1994.Tb47410.X  0.415
1993 Simon MJ, Osslund TD, Saunders R, Ensley BD, Suggs S, Harcourt A, Suen WC, Cruden DL, Gibson DT, Zylstra GJ. Sequences of genes encoding naphthalene dioxygenase in Pseudomonas putida strains G7 and NCIB 9816-4. Gene. 127: 31-7. PMID 8486285 DOI: 10.1016/0378-1119(93)90613-8  0.61
1993 Gibson DT, Cruden DL, Haddock JD, Zylstra GJ, Brand JM. Oxidation of polychlorinated biphenyls by Pseudomonas sp. strain LB400 and Pseudomonas pseudoalcaligenes KF707. Journal of Bacteriology. 175: 4561-4. PMID 8331086 DOI: 10.1128/Jb.175.14.4561-4564.1993  0.552
1993 Lajoie CA, Zylstra GJ, DeFlaun MF, Strom PF. Development of field application vectors for bioremediation of soils contaminated with polychlorinated biphenyls Applied and Environmental Microbiology. 59: 1735-1741. PMID 8328798 DOI: 10.1128/Aem.59.6.1735-1741.1993  0.351
1992 Brand JM, Cruden DL, Zylstra GJ, Gibson DT. Stereospecific hydroxylation of indan by Escherichia coli containing the cloned toluene dioxygenase genes from Pseudomonas putida F1. Applied and Environmental Microbiology. 58: 3407-9. PMID 1444374 DOI: 10.1128/Aem.58.10.3407-3409.1992  0.525
1991 Menn FM, Zylstra GJ, Gibson DT. Location and sequence of the todF gene encoding 2-hydroxy-6-oxohepta-2,4-dienoate hydrolase in Pseudomonas putida F1. Gene. 104: 91-4. PMID 1916282 DOI: 10.1016/0378-1119(91)90470-V  0.603
1991 Zylstra GJ, Gibson DT. Aromatic hydrocarbon degradation: a molecular approach. Genetic Engineering. 13: 183-203. PMID 1367414 DOI: 10.1007/978-1-4615-3760-1_8  0.525
1989 Zylstra GJ, Olsen RH, Ballou DP. Genetic organization and sequence of the Pseudomonas cepacia genes for the alpha and beta subunits of protocatechuate 3,4-dioxygenase. Journal of Bacteriology. 171: 5915-21. PMID 2808303 DOI: 10.1128/Jb.171.11.5915-5921.1989  0.345
1989 Zylstra GJ, Olsen RH, Ballou DP. Cloning, expression, and regulation of the Pseudomonas cepacia protocatechuate 3,4-dioxygenase genes. Journal of Bacteriology. 171: 5907-14. PMID 2808302 DOI: 10.1128/Jb.171.11.5907-5914.1989  0.3
1989 Zylstra GJ, Wackett LP, Gibson DT. Trichloroethylene degradation by Escherichia coli containing the cloned Pseudomonas putida F1 toluene dioxygenase genes. Applied and Environmental Microbiology. 55: 3162-6. PMID 2694960 DOI: 10.1128/Aem.55.12.3162-3166.1989  0.673
1989 Zylstra GJ, Gibson DT. Toluene degradation by Pseudomonas putida F1. Nucleotide sequence of the todC1C2BADE genes and their expression in Escherichia coli. The Journal of Biological Chemistry. 264: 14940-6. PMID 2670929  0.579
1989 Spain JC, Zylstra GJ, Blake CK, Gibson DT. Monohydroxylation of phenol and 2,5-dichlorophenol by toluene dioxygenase in Pseudomonas putida F1. Applied and Environmental Microbiology. 55: 2648-52. PMID 2604403 DOI: 10.1128/Aem.55.10.2648-2652.1989  0.677
1988 Zylstra GJ, McCombie WR, Gibson DT, Finette BA. Toluene degradation by Pseudomonas putida F1: genetic organization of the tod operon. Applied and Environmental Microbiology. 54: 1498-503. PMID 2843094 DOI: 10.1128/Aem.54.6.1498-1503.1988  0.6
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