Suzanne T. Szak, Ph.D. - Related publications

2000 Vanderbilt University, Nashville, TN 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Farkas M, Hashimoto H, Bi Y, Davuluri RV, Resnick-Silverman L, Manfredi JJ, Debler EW, McMahon SB. Distinct mechanisms control genome recognition by p53 at its target genes linked to different cell fates. Nature Communications. 12: 484. PMID 33473123 DOI: 10.1038/s41467-020-20783-z   
2021 Sun X, Dyson HJ, Wright PE. A phosphorylation-dependent switch in the disordered p53 transactivation domain regulates DNA binding. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33443163 DOI: 10.1073/pnas.2021456118   
2021 Li J, Dai S, Chen X, Liang X, Qu L, Jiang L, Guo M, Zhou Z, Wei H, Zhang H, Chen Z, Chen L, Chen Y. Mechanism of forkhead transcription factors binding to a novel palindromic DNA site. Nucleic Acids Research. PMID 33577686 DOI: 10.1093/nar/gkab086   
2021 Hansda S, Mitra A, Ghosh R. Studies to explore the UVA photosensitizing action of 9-phenylacridine in cells by interaction with DNA. Nucleosides, Nucleotides & Nucleic Acids. 1-30. PMID 33586599 DOI: 10.1080/15257770.2021.1880011   
2021 Cai J, Wang N, Lin G, Zhang H, Xie W, Zhang Y, Xu N. MBNL2 Regulates DNA Damage Response via Stabilizing p21. International Journal of Molecular Sciences. 22. PMID 33466733 DOI: 10.3390/ijms22020783   
2021 Sundararaj S, Seneviratne S, Williams SJ, Enders A, Casarotto MG. Structural determinants of the IRF4/DNA homodimeric complex. Nucleic Acids Research. PMID 33533913 DOI: 10.1093/nar/gkaa1287   
2021 Bortolozzi R, Ihmels H, Schulte R, Stremmel C, Viola G. Synthesis, DNA-binding and antiproliferative properties of diarylquinolizinium derivatives. Organic & Biomolecular Chemistry. PMID 33410854 DOI: 10.1039/d0ob02298e   
2021 Perez-Borrajero C, Heinkel F, Gsponer J, McIntosh LP. Conformational Plasticity and DNA-Binding Specificity of the Eukaryotic Transcription Factor Pax5. Biochemistry. 60: 104-117. PMID 33398994 DOI: 10.1021/acs.biochem.0c00737   
2021 Kim J, Ahn D, Park CJ. FOXO4 transactivation domain interaction with forkhead DNA binding domain and effect on selective DNA recognition for transcription initiation. Journal of Molecular Biology. 166808. PMID 33450250 DOI: 10.1016/j.jmb.2021.166808   
2021 Song G, Wang G, Luo X, Cheng Y, Song Q, Wan J, Moore C, Song H, Jin P, Qian J, Zhu H. An all-to-all approach to the identification of sequence-specific readers for epigenetic DNA modifications on cytosine. Nature Communications. 12: 795. PMID 33542217 DOI: 10.1038/s41467-021-20950-w   
2021 Ray S, Tillo D, Durell SR, Khund-Sayeed S, Vinson C. REL Domain of NFATc2 Binding to Five Types of DNA Using Protein Binding Microarrays. Acs Omega. 6: 4147-4154. PMID 33644537 DOI: 10.1021/acsomega.0c04069   
2021 Kim JS, Chae S, Jun KM, Lee GS, Jeon JS, Kim KD, Kim YK. Rice protein-binding microarrays: a tool to detect cis-acting elements near promoter regions in rice. Planta. 253: 40. PMID 33475863 DOI: 10.1007/s00425-021-03572-w   
2021 Liang L, Wang Z, Qu L, Huang W, Guo S, Guan X, Zhang W, Sun F, Yuan H, Zou H, Liu H, Yu Z. Single-molecule multiplexed profiling of protein-DNA complexes using Magnetic Tweezers. The Journal of Biological Chemistry. 100327. PMID 33493518 DOI: 10.1016/j.jbc.2021.100327   
2021 Jeong SW, Kim MK, Zhao L, Yang SK, Jung JH, Lim HM, Lim S. Effects of Conserved Wedge Domain Residues on DNA Binding Activity of RecG Helicase. Frontiers in Genetics. 12: 634615. PMID 33613647 DOI: 10.3389/fgene.2021.634615   
2021 Ahmad F, Patterson A, Deveryshetty J, Mattice JR, Pokhrel N, Bothner B, Antony E. Hydrogen-deuterium exchange reveals a dynamic DNA-binding map of replication protein A. Nucleic Acids Research. PMID 33444457 DOI: 10.1093/nar/gkaa1288   
2021 Mohammad M, Al Rasid Gazi H, Pandav K, Pandya P, Islam MM. Evidence for Dual Site Binding of Nile Blue A toward DNA: Spectroscopic, Thermodynamic, and Molecular Modeling Studies. Acs Omega. 6: 2613-2625. PMID 33553879 DOI: 10.1021/acsomega.0c04775   
2021 Mohammad M, Al Rasid Gazi H, Pandav K, Pandya P, Islam MM. Evidence for Dual Site Binding of Nile Blue A toward DNA: Spectroscopic, Thermodynamic, and Molecular Modeling Studies. Acs Omega. 6: 2613-2625. PMID 33553879 DOI: 10.1021/acsomega.0c04775   
2021 Wang J, Dubiel D, Wu Y, Cheng Y, Wolf DA, Dubiel W. CSN7B defines a variant COP9 signalosome complex with distinct function in DNA damage response. Cell Reports. 34: 108662. PMID 33503427 DOI: 10.1016/j.celrep.2020.108662   
2021 Kumar S, Kumar P, Nair MS. Exploring the binding of resveratrol to a promoter DNA sequence d(CCAATTGG) through multispectroscopic, nuclear magnetic resonance and molecular dynamics studies. Spectrochimica Acta. Part a, Molecular and Biomolecular Spectroscopy. 252: 119488. PMID 33545510 DOI: 10.1016/j.saa.2021.119488   
2021 Shorrocks AK, Jones SE, Tsukada K, Morrow CA, Belblidia Z, Shen J, Vendrell I, Fischer R, Kessler BM, Blackford AN. The Bloom syndrome complex senses RPA-coated single-stranded DNA to restart stalled replication forks. Nature Communications. 12: 585. PMID 33500419 DOI: 10.1038/s41467-020-20818-5   
2021 Maity D, Katreddy RR, Bandhu A. Molecular Cloning, Purification and Characterization of Mce1R of Mycobacterium tuberculosis. Molecular Biotechnology. PMID 33423211 DOI: 10.1007/s12033-020-00293-5   
2021 Cai DH, Zhang CL, Liu QY, He L, Liu YJ, Xiong YH, Le XY. Synthesis, DNA binding, antibacterial and anticancer properties of two novel water-soluble copper(II) complexes containing gluconate. European Journal of Medicinal Chemistry. 213: 113182. PMID 33486198 DOI: 10.1016/j.ejmech.2021.113182   
2021 Zhang Q, Wang S, Chen Z, He Y, Liu Q, Huang DS. Locating transcription factor binding sites by fully convolutional neural network. Briefings in Bioinformatics. PMID 33498086 DOI: 10.1093/bib/bbaa435   
2021 Lin M, Malik FK, Guo JT. A comparative study of protein-ssDNA interactions. Nar Genomics and Bioinformatics. 3: lqab006. PMID 33655206 DOI: 10.1093/nargab/lqab006   
2021 Guo Z, Wang YH, Xu H, Yuan CS, Zhou HH, Huang WH, Wang H, Zhang W. LncRNA linc00312 suppresses radiotherapy resistance by targeting DNA-PKcs and impairing DNA damage repair in nasopharyngeal carcinoma. Cell Death & Disease. 12: 69. PMID 33431817 DOI: 10.1038/s41419-020-03302-2   
2021 Campbell AE, Ferraz Franco C, Su LI, Corbin EK, Perkins S, Kalyuzhnyy A, Jones AR, Brownridge PJ, Perkins ND, Eyers CE. Temporal modulation of the NF-κB RelA network in response to different types of DNA damage. The Biochemical Journal. PMID 33438746 DOI: 10.1042/BCJ20200627   
2021 Hunter TTJ, Fear D, Lavender P, Spencer J, Peakman M, Ibrahim MAA. Quantitative assessment of NFκB transcription factor activity. Journal of Immunological Methods. 112954. PMID 33388338 DOI: 10.1016/j.jim.2020.112954   
2021 Leitner PD, Vietor I, Huber LA, Valovka T. Fluorescent thermal shift-based method for detection of NF-κB binding to double-stranded DNA. Scientific Reports. 11: 2331. PMID 33504856 DOI: 10.1038/s41598-021-81743-1   
2021 Lee CJ, Yoon MJ, Kim DH, Kim TU, Kang YJ. Profilin-1; a novel regulator of DNA damage response and repair machinery in keratinocytes. Molecular Biology Reports. PMID 33590416 DOI: 10.1007/s11033-021-06210-6   
2021 Wong CT, Oh DH. Vitamin D receptor promotes global nucleotide excision repair by facilitating XPC dissociation from damaged DNA. The Journal of Investigative Dermatology. PMID 33524369 DOI: 10.1016/j.jid.2020.11.033   
2021 Kaminski P, Hong S, Kono T, Hoover P, Laimins L. Topoisomerase 2β Induces DNA Breaks To Regulate Human Papillomavirus Replication. Mbio. 12. PMID 33563836 DOI: 10.1128/mBio.00005-21   
2021 Shafi AA, McNair CM, McCann JJ, Alshalalfa M, Shostak A, Severson TM, Zhu Y, Bergman A, Gordon N, Mandigo AC, Chand SN, Gallagher P, Dylgjeri E, Laufer TS, Vasilevskaya IA, et al. The circadian cryptochrome, CRY1, is a pro-tumorigenic factor that rhythmically modulates DNA repair. Nature Communications. 12: 401. PMID 33452241 DOI: 10.1038/s41467-020-20513-5   
2021 Zheng H, Botos I, Clausse V, Nikolayevskiy H, Rastede EE, Fouz MF, Mazur SJ, Appella DH. Conformational constraints of cyclopentane peptide nucleic acids facilitate tunable binding to DNA. Nucleic Acids Research. PMID 33406227 DOI: 10.1093/nar/gkaa1249   
2021 Sutera VA, Weeks SJ, Dudenhausen EE, Baggett HBR, Shaw MC, Brand KA, Glass DJ, Bloom LB, Lovett ST. Alternative complexes formed by the Escherichia coli clamp loader accessory protein HolC (x) with replication protein HolD (ψ) and repair protein YoaA. Dna Repair. 100: 103006. PMID 33582602 DOI: 10.1016/j.dnarep.2020.103006   
2021 Wang Y, Wang N, Liu J, Zhang Y, Li X, Han Q. Homolog of Saccharomyces cerevisiae SLX4 is required for cell recovery from MMS-induced DNA damage in Candida albicans. Fems Yeast Research. PMID 33606011 DOI: 10.1093/femsyr/foab010   
2021 Henrikus SS, van Oijen AM, Robinson A. Single-molecule fluorescence microscopy reveals modulation of DNA polymerase IV-binding lifetimes by UmuD (K97A) and UmuD'. Current Genetics. PMID 33386487 DOI: 10.1007/s00294-020-01134-3   
2021 Fan Z, Yao B, Ding Y, Xie M, Zhao J, Zhang K, Huang W. Electrochemiluminescence aptasensor for Siglec-5 detection based on MoS@Au nanocomposites emitter and exonuclease III-powered DNA walker. Sensors and Actuators. B, Chemical. 129592. PMID 33584010 DOI: 10.1016/j.snb.2021.129592   
2021 Zhang L, Misiara L, Samaranayake GJ, Sharma N, Nguyen DM, Tahara YK, Kool ET, Rai P. OGG1 co-inhibition antagonizes the tumor-inhibitory effects of targeting MTH1. Redox Biology. 40: 101848. PMID 33450725 DOI: 10.1016/j.redox.2020.101848   
2021 Claeys Bouuaert C, Tischfield SE, Pu S, Mimitou EP, Arias-Palomo E, Berger JM, Keeney S. Structural and functional characterization of the Spo11 core complex. Nature Structural & Molecular Biology. PMID 33398171 DOI: 10.1038/s41594-020-00534-w   
2021 Kozlov AG, Lohman TM. Probing E. coli SSB Protein-DNA topology by reversing DNA backbone polarity. Biophysical Journal. PMID 33636169 DOI: 10.1016/j.bpj.2021.02.025   
2021 Vilar R, Kench T, Summers PA, Kuimova MK, Lewis JEM. Rotaxanes as cages to control DNA binding, cytotoxicity and cellular uptake of a small molecule. Angewandte Chemie (International Ed. in English). PMID 33577711 DOI: 10.1002/anie.202100151   
2021 Dheekollu J, Wiedmer A, Ayyanathan K, Deakyne JS, Messick TE, Lieberman PM. Cell-cycle-dependent EBNA1-DNA crosslinking promotes replication termination at oriP and viral episome maintenance. Cell. PMID 33482082 DOI: 10.1016/j.cell.2020.12.022   
2021 Patterson-West J, Tai CH, Son B, Hsieh ML, Iben JR, Hinton DM. Overexpression of the Bacteriophage T4 Gene Alters H-NS Dependent Repression of Specific Host DNA. Viruses. 13. PMID 33435393 DOI: 10.3390/v13010084   
2021 Kasho K, Stojkovič G, Velázquez-Ruiz C, Martínez-Jiménez MI, Doimo M, Laurent T, Berner A, Pérez-Rivera AE, Jenninger L, Blanco L, Wanrooij S. A unique arginine cluster in PolDIP2 enhances nucleotide binding and DNA synthesis by PrimPol. Nucleic Acids Research. PMID 33533925 DOI: 10.1093/nar/gkab049   
2021 Hogeveen K, Huet S, Besnard C, Murray JS, Harwood DT, Selwood AI, Fessard V. In vitro investigation of the genotoxicity of portimine, a cyclic imine toxin produced by the dinoflagellate Vulcanodinium rugosum, on human hepatic HepaRG cells. Toxicology in Vitro : An International Journal Published in Association With Bibra. 105125. PMID 33631200 DOI: 10.1016/j.tiv.2021.105125   
2021 Chen TY, Huang BM, Tang TK, Chao YY, Xiao XY, Lee PR, Yang LY, Wang CY. Genotoxic stress-activated DNA-PK-p53 cascade and autophagy cooperatively induce ciliogenesis to maintain the DNA damage response. Cell Death and Differentiation. PMID 33462409 DOI: 10.1038/s41418-020-00713-8   
2021 Chen TY, Huang BM, Tang TK, Chao YY, Xiao XY, Lee PR, Yang LY, Wang CY. Genotoxic stress-activated DNA-PK-p53 cascade and autophagy cooperatively induce ciliogenesis to maintain the DNA damage response. Cell Death and Differentiation. PMID 33462409 DOI: 10.1038/s41418-020-00713-8   
2021 Lupo BE, Chu P, Harms MJ, Morrison EA, Musselman CA. Evolutionary conservation of structural and functional coupling between the BRM AT-hook and bromodomain. Journal of Molecular Biology. 166845. PMID 33539881 DOI: 10.1016/j.jmb.2021.166845   
2021 Frittmann O, Gali VK, Halmai M, Toth R, Gyorfy Z, Balint E, Unk I. The Zn-finger of Saccharomyces cerevisiae Rad18 and its adjacent region mediate interaction with Rad5. G3 (Bethesda, Md.). PMID 33570581 DOI: 10.1093/g3journal/jkab041   
2021 Wang XY, Li L, Duan QH, Li DL, Chen JL. Effect of Uhrf1 on intestinal development. Yi Chuan = Hereditas. 43: 84-93. PMID 33509777 DOI: 10.16288/j.yczz.20-337