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Kristine E. Yoder, Ph.D. - Publications

Affiliations: 
2000 University of California, San Diego, La Jolla, CA 
Area:
Molecular Biology, Cell Biology, Microbiology Biology, Immunology
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25 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Yoder KE. Absence of LEDGF/p75 Expression in Astrocytes May Affect HIV-1 Integration Efficiency Molecular Genetics Microbiology and Virology. 34: 81-83. PMID 33867663 DOI: 10.3103/S0891416819020113  0.321
2019 Yoder KE. A CRISPR/Cas9 library to map the HIV-1 provirus genetic fitness. Acta Virologica. 63: 129-138. PMID 31230441 DOI: 10.4149/Av_2019_201  0.376
2019 Mackler RM, Jones ND, Gardner AM, Lopez MA, Howard CJ, Fishel R, Yoder KE. Nucleosome DNA unwrapping does not affect prototype foamy virus integration efficiency or site selection. Plos One. 14: e0212764. PMID 30865665 DOI: 10.1371/Journal.Pone.0212764  0.385
2019 Jones ND, Mackler RM, Lopez MA, Baltierra-Jasso LE, Altman MP, Senavirathne G, Yoder KE. Prototype foamy virus intasome aggregation is mediated by outer protein domains and prevented by protocatechuic acid. Scientific Reports. 9: 132. PMID 30644416 DOI: 10.1038/S41598-018-36725-1  0.34
2018 Panfil AR, London JA, Green PL, Yoder KE. CRISPR/Cas9 Genome Editing to Disable the Latent HIV-1 Provirus. Frontiers in Microbiology. 9: 3107. PMID 30619186 DOI: 10.3389/Fmicb.2018.03107  0.373
2018 Mackler RM, Lopez MA, Osterhage MJ, Yoder KE. Prototype foamy virus integrase is promiscuous for target choice. Biochemical and Biophysical Research Communications. PMID 30017200 DOI: 10.1016/J.Bbrc.2018.07.031  0.417
2018 Mackler RM, Lopez MA, Yoder KE. Assembly and Purification of Prototype Foamy Virus Intasomes. Journal of Visualized Experiments : Jove. PMID 29608167 DOI: 10.3791/57453  0.385
2017 Lopez MA, Mackler RM, Altman MP, Yoder KE. Detection and Removal of Nuclease Contamination During Purification of Recombinant Prototype Foamy Virus Integrase. Journal of Visualized Experiments : Jove. PMID 29286489 DOI: 10.3791/56605  0.433
2016 Yoder KE, Bundschuh R. Host Double Strand Break Repair Generates HIV-1 Strains Resistant to CRISPR/Cas9. Scientific Reports. 6: 29530. PMID 27404981 DOI: 10.1038/Srep29530  0.379
2016 Lopez MA, Mackler RM, Yoder KE. Removal of nuclease contamination during purification of recombinant Prototype Foamy Virus integrase. Journal of Virological Methods. PMID 27269588 DOI: 10.1016/J.Jviromet.2016.06.002  0.386
2016 Jones ND, Lopez MA, Hanne J, Peake MB, Lee JB, Fishel R, Yoder KE. Retroviral intasomes search for a target DNA by 1D diffusion which rarely results in integration. Nature Communications. 7: 11409. PMID 27108531 DOI: 10.1038/Ncomms11409  0.384
2014 Bennett GR, Peters R, Wang XH, Hanne J, Sobol RW, Bundschuh R, Fishel R, Yoder KE. Repair of oxidative DNA base damage in the host genome influences the HIV integration site sequence preference. Plos One. 9: e103164. PMID 25051054 DOI: 10.1371/Journal.Pone.0103164  0.43
2011 Yoder KE, Espeseth A, Wang XH, Fang Q, Russo MT, Lloyd RS, Hazuda D, Sobol RW, Fishel R. The base excision repair pathway is required for efficient lentivirus integration. Plos One. 6: e17862. PMID 21448280 DOI: 10.1371/Journal.Pone.0017862  0.42
2011 Espeseth AS, Fishel R, Hazuda D, Huang Q, Xu M, Yoder K, Zhou H. siRNA screening of a targeted library of DNA repair factors in HIV infection reveals a role for base excision repair in HIV integration. Plos One. 6: e17612. PMID 21448273 DOI: 10.1371/Journal.Pone.0017612  0.411
2011 Yoder KE, Roddick W, Hoellerbauer P, Fishel R. XPB mediated retroviral cDNA degradation coincides with entry to the nucleus. Virology. 410: 291-8. PMID 21167544 DOI: 10.1016/J.Virol.2010.11.016  0.415
2009 Charbonneau N, Amunugama R, Schmutte C, Yoder K, Fishel R. Evidence that hMLH3 functions primarily in meiosis and in hMSH2-hMSH3 mismatch repair. Cancer Biology & Therapy. 8: 1411-20. PMID 19483466 DOI: 10.4161/Cbt.8.14.8886  0.317
2008 Yoder KE, Fishel R. Real-time quantitative PCR and fast QPCR have similar sensitivity and accuracy with HIV cDNA late reverse transcripts and 2-LTR circles. Journal of Virological Methods. 153: 253-6. PMID 18762215 DOI: 10.1016/J.Jviromet.2008.07.032  0.308
2007 Ikura T, Tashiro S, Kakino A, Shima H, Jacob N, Amunugama R, Yoder K, Izumi S, Kuraoka I, Tanaka K, Kimura H, Ikura M, Nishikubo S, Ito T, Muto A, et al. DNA damage-dependent acetylation and ubiquitination of H2AX enhances chromatin dynamics. Molecular and Cellular Biology. 27: 7028-40. PMID 17709392 DOI: 10.1128/Mcb.00579-07  0.321
2006 Yoder KE, Fishel R. PCR-based detection is unable to consistently distinguish HIV 1LTR circles. Journal of Virological Methods. 138: 201-6. PMID 16956673 DOI: 10.1016/J.Jviromet.2006.07.022  0.341
2006 Shim KS, Schmutte C, Yoder K, Fishel R. Defining the salt effect on human RAD51 activities. Dna Repair. 5: 718-30. PMID 16644292 DOI: 10.1016/J.Dnarep.2006.03.006  0.334
2006 Yoder K, Sarasin A, Kraemer K, McIlhatton M, Bushman F, Fishel R. The DNA repair genes XPB and XPD defend cells from retroviral infection. Proceedings of the National Academy of Sciences of the United States of America. 103: 4622-7. PMID 16537383 DOI: 10.1073/Pnas.0509828103  0.45
2001 Li L, Olvera JM, Yoder KE, Mitchell RS, Butler SL, Lieber M, Martin SL, Bushman FD. Role of the non-homologous DNA end joining pathway in the early steps of retroviral infection. The Embo Journal. 20: 3272-81. PMID 11406603 DOI: 10.1093/Emboj/20.12.3272  0.399
2000 Yoder KE, Bushman FD. Repair of gaps in retroviral DNA integration intermediates Journal of Virology. 74: 11191-11200. PMID 11070016 DOI: 10.1128/Jvi.74.23.11191-11200.2000  0.372
2000 Li L, Yoder K, Hansen MS, Olvera J, Miller MD, Bushman FD. Retroviral cDNA integration: stimulation by HMG I family proteins. Journal of Virology. 74: 10965-74. PMID 11069991 DOI: 10.1128/Jvi.74.23.10965-10974.2000  0.445
1997 Fortunato EA, Sommer MH, Yoder K, Spector DH. Identification of domains within the human cytomegalovirus major immediate-early 86-kilodalton protein and the retinoblastoma protein required for physical and functional interaction with each other Journal of Virology. 71: 8176-8185. PMID 9343168 DOI: 10.1128/Jvi.71.11.8176-8185.1997  0.515
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