Mark L. Farman - Publications

University of Kentucky, Lexington, KY 
Plant Pathology Agriculture, Microbiology Biology

39 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Florea S, Phillips TD, Panaccione DG, Farman ML, Schardl CL. Chromosome-End Knockoff Strategy to Reshape Alkaloid Profiles of a Fungal Endophyte. G3 (Bethesda, Md.). PMID 27334939 DOI: 10.1534/g3.116.029686  1
2015 Okagaki LH, Nunes CC, Sailsbery J, Clay B, Brown D, John T, Oh Y, Young N, Fitzgerald M, Haas BJ, Zeng Q, Young S, Adiconis X, Fan L, Levin JZ, ... ... Farman ML, et al. Genome Sequences of Three Phytopathogenic Species of the Magnaporthaceae Family of Fungi. G3 (Bethesda, Md.). PMID 26416668 DOI: 10.1534/g3.115.020057  1
2014 Nelson PT, Estus S, Abner EL, Parikh I, Malik M, Neltner JH, Ighodaro E, Wang WX, Wilfred BR, Wang LS, Kukull WA, Nandakumar K, Farman ML, Poon WW, Corrada MM, et al. ABCC9 gene polymorphism is associated with hippocampal sclerosis of aging pathology. Acta Neuropathologica. 127: 825-43. PMID 24770881 DOI: 10.1007/s00401-014-1282-2  1
2014 Schardl CL, Young CA, Moore N, Krom N, Dupont PY, Pan J, Florea S, Webb JS, Jaromczyk J, Jaromczyk JW, Cox MP, Farman ML. Genomes of plant-associated clavicipitaceae Advances in Botanical Research. 70: 291-327. DOI: 10.1016/B978-0-12-397940-7.00010-0  1
2013 Schardl CL, Young CA, Pan J, Florea S, Takach JE, Panaccione DG, Farman ML, Webb JS, Jaromczyk J, Charlton ND, Nagabhyru P, Chen L, Shi C, Leuchtmann A. Currencies of mutualisms: sources of alkaloid genes in vertically transmitted epichloae. Toxins. 5: 1064-88. PMID 23744053 DOI: 10.3390/toxins5061064  1
2013 Schardl CL, Young CA, Hesse U, Amyotte SG, Andreeva K, Calie PJ, Fleetwood DJ, Haws DC, Moore N, Oeser B, Panaccione DG, Schweri KK, Voisey CR, Farman ML, Jaromczyk JW, et al. Plant-symbiotic fungi as chemical engineers: multi-genome analysis of the clavicipitaceae reveals dynamics of alkaloid loci. Plos Genetics. 9: e1003323. PMID 23468653 DOI: 10.1371/journal.pgen.1003323  1
2012 Starnes JH, Thornbury DW, Novikova OS, Rehmeyer CJ, Farman ML. Telomere-targeted retrotransposons in the rice blast fungus Magnaporthe oryzae: agents of telomere instability. Genetics. 191: 389-406. PMID 22446319 DOI: 10.1534/genetics.111.137950  1
2011 Farman ML. Targeted cloning of fungal telomeres. Methods in Molecular Biology (Clifton, N.J.). 722: 11-31. PMID 21590410 DOI: 10.1007/978-1-61779-040-9_2  1
2010 de Sá PB, Li H, Havens WM, Farman ML, Ghabrial SA. Overexpression of the victoriocin gene in Helminthosporium (Cochliobolus) victoriae enhances the antifungal activity of culture filtrates. Phytopathology. 100: 890-6. PMID 20701486 DOI: 10.1094/PHYTO-100-9-0890  1
2010 Stajich JE, Wilke SK, Ahrén D, Au CH, Birren BW, Borodovsky M, Burns C, Canbäck B, Casselton LA, Cheng CK, Deng J, Dietrich FS, Fargo DC, Farman ML, Gathman AC, et al. Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus). Proceedings of the National Academy of Sciences of the United States of America. 107: 11889-94. PMID 20547848 DOI: 10.1073/pnas.1003391107  1
2010 Schwartz SL, Farman ML. Systematic overrepresentation of DNA termini and underrepresentation of subterminal regions among sequencing templates prepared from hydrodynamically sheared linear DNA molecules. Bmc Genomics. 11: 87. PMID 20122283 DOI: 10.1186/1471-2164-11-87  1
2009 Coleman JJ, Rounsley SD, Rodriguez-Carres M, Kuo A, Wasmann CC, Grimwood J, Schmutz J, Taga M, White GJ, Zhou S, Schwartz DC, Freitag M, Ma LJ, Danchin EG, Henrissat B, ... ... Farman ML, et al. The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion. Plos Genetics. 5: e1000618. PMID 19714214 DOI: 10.1371/journal.pgen.1000618  1
2009 Rehmeyer CJ, Li W, Kusaba M, Farman ML. The telomere-linked helicase (TLH) gene family in Magnaporthe oryzae: revised gene structure reveals a novel TLH-specific protein motif. Current Genetics. 55: 253-62. PMID 19360408 DOI: 10.1007/s00294-009-0240-3  1
2009 Wu C, Kim YS, Smith KM, Li W, Hood HM, Staben C, Selker EU, Sachs MS, Farman ML. Characterization of chromosome ends in the filamentous fungus Neurospora crassa. Genetics. 181: 1129-45. PMID 19104079 DOI: 10.1534/genetics.107.084392  1
2007 Farman ML. Telomeres in the rice blast fungus Magnaporthe oryzae: the world of the end as we know it. Fems Microbiology Letters. 273: 125-32. PMID 17610516 DOI: 10.1111/j.1574-6968.2007.00812.x  1
2007 Betts MF, Tucker SL, Galadima N, Meng Y, Patel G, Li L, Donofrio N, Floyd A, Nolin S, Brown D, Mandel MA, Mitchell TK, Xu JR, Dean RA, Farman ML, et al. Development of a high throughput transformation system for insertional mutagenesis in Magnaporthe oryzae. Fungal Genetics and Biology : Fg & B. 44: 1035-49. PMID 17600737 DOI: 10.1016/j.fgb.2007.05.001  1
2007 Meng Y, Patel G, Heist M, Betts MF, Tucker SL, Galadima N, Donofrio NM, Brown D, Mitchell TK, Li L, Xu JR, Orbach M, Thon M, Dean RA, Farman ML. A systematic analysis of T-DNA insertion events in Magnaporthe oryzae. Fungal Genetics and Biology : Fg & B. 44: 1050-64. PMID 17544743 DOI: 10.1016/j.fgb.2007.04.002  1
2006 Peyyala R, Farman ML. Magnaporthe oryzae isolates causing gray leaf spot of perennial ryegrass possess a functional copy of the AVR1-CO39 avirulence gene. Molecular Plant Pathology. 7: 157-65. PMID 20507436 DOI: 10.1111/j.1364-3703.2006.00325.x  1
2005 Farman ML, Kim YS. Telomere hypervariability in Magnaporthe oryzae. Molecular Plant Pathology. 6: 287-98. PMID 20565657 DOI: 10.1111/j.1364-3703.2005.00285.x  1
2005 Luo CX, Yin LF, Koyanagi S, Farman ML, Kusaba M, Yaegashi H. Genetic Mapping and Chromosomal Assignment of Magnaporthe oryzae Avirulence Genes AvrPik, AvrPiz, and AvrPiz-t Controlling Cultivar Specificity on Rice. Phytopathology. 95: 640-7. PMID 18943780 DOI: 10.1094/PHYTO-95-0640  1
2005 Dean RA, Talbot NJ, Ebbole DJ, Farman ML, Mitchell TK, Orbach MJ, Thon M, Kulkarni R, Xu JR, Pan H, Read ND, Lee YI, Carbone I, Brown D, Yeon YO, et al. The genome sequence of the rice blast fungus Magnaporthe grisea Nature. 434: 980-986. PMID 15846337 DOI: 10.1038/nature03449  1
2005 Li W, Rehmeyer CJ, Staben C, Farman ML. TruMatch--a BLAST post-processor that identifies bona fide sequence matches to genome assemblies. Bioinformatics (Oxford, England). 21: 2097-8. PMID 15671115 DOI: 10.1093/bioinformatics/bti257  1
2005 Li W, Rehmeyer CJ, Staben C, Farman ML. TERMINUS--Telomeric End-Read Mining IN Unassembled Sequences. Bioinformatics (Oxford, England). 21: 1695-8. PMID 15585532 DOI: 10.1093/bioinformatics/bti181  1
2004 Farman ML, Gilkerson JW, Jaromczyk JW, Staben C. Repeatassembler: A package for annotation of full-length repetitive DNA sequences in fungal genomes Proceedings - 2004 Ieee Computational Systems Bioinformatics Conference, Csb 2004. 464-467.  1
2003 Kim YS, Dixon EW, Vincelli P, Farman ML. Field resistance to strobilurin (QoI) fungicides in Pyricularia grisea caused by mutations in the mitochondrial cytochrome b gene Phytopathology. 93: 891-900.  1
2002 Sukno SA, Taylor AM, Farman ML. Genetic Uniformity Among Isolates of Peronospora tabacina, the Tobacco Blue Mold Pathogen. Phytopathology. 92: 1236-44. PMID 18944250 DOI: 10.1094/PHYTO.2002.92.11.1236  1
2002 Farman ML. Pyricularia grisea Isolates Causing Gray Leaf Spot on Perennial Ryegrass (Lolium perenne) in the United States: Relationship to P. grisea Isolates from Other Host Plants. Phytopathology. 92: 245-54. PMID 18943995 DOI: 10.1094/PHYTO.2002.92.3.245  1
2002 Farman ML, Eto Y, Nakao T, Tosa Y, Nakayashiki H, Mayama S, Leong SA. Analysis of the structure of the AVR1-CO39 avirulence locus in virulent rice-infecting isolates of Magnaporthe grisea. Molecular Plant-Microbe Interactions : Mpmi. 15: 6-16. PMID 11843304 DOI: 10.1094/MPMI.2002.15.1.6  1
2002 Farman ML. Meiotic deletion at the BUF1 locus of the fungus Magnaporthe grisea is controlled by interaction with the homologous chromosome. Genetics. 160: 137-48. PMID 11805051  1
2000 Thornbury DW, Farman ML. Reusing nylon membranes for radioactive hybridizations Biotechniques. 29: 1250-1254. PMID 11126128  1
1998 Farman ML, Leong SA. Chromosome walking to the AVR1-CO39 avirulence gene of Magnaporthe grisea: Discrepancy between the physical and genetic maps Genetics. 150: 1049-1058. PMID 9799257  1
1997 Nitta N, Farman ML, Leong SA. Genome organization of Magnaporthe grisea: Integration of genetic maps, clustering of transposable elements and identification of genome duplications and rearrangements Theoretical and Applied Genetics. 95: 20-32. DOI: 10.1007/s001220050528  1
1996 An Z, Farman ML, Budde A, Taura S, Leong SA. New cosmid vectors for library construction, chromosome walking and restriction mapping in filamentous fungi Gene. 176: 93-96. PMID 8918238 DOI: 10.1016/0378-1119(96)00225-9  1
1996 Farman ML, Taura S, Leong SA. The Magnaporthe grisea DNA fingerprinting probe MGR586 contains the 3' end of an inverted repeat transposon Molecular and General Genetics. 251: 675-681. PMID 8757398 DOI: 10.1007/s004380050216  1
1996 Farman ML, Tosa Y, Nitta N, Leong SA. MAGGY, a retrotransposon in the genome of the rice blast fungus Magnaporthe grisea Molecular and General Genetics. 251: 665-674. PMID 8757397 DOI: 10.1007/s004380050215  1
1995 Farman ML, Leong SA. Genetic and physical mapping of telomeres in the rice blast fungus, Magnaporthe grisea Genetics. 140: 479-492. PMID 7498730  1
1993 Skinner DZ, Budde AD, Farman ML, Smith JR, Leung H, Leong SA. Genome organization of Magnaporthe grisea: genetic map, electrophoretic karyotype, and occurrence of repeated DNAs Theoretical and Applied Genetics: International Journal of Plant Breeding Research. 87: 545-557. DOI: 10.1007/BF00221877  1
1992 Farman ML, Oliver RP. Transformation frequencies are enhanced and vector DNA is targeted during retransformation of Leptosphaeria maculans, a fungal plant pathogen Mgg Molecular &Amp; General Genetics. 231: 243-247. PMID 1736094 DOI: 10.1007/BF00279797  1
1988 Farman ML, Oliver RP. The transformation of protoplasts of Leptosphaeria maculans to hygromycin B resistance Current Genetics. 13: 327-330. DOI: 10.1007/BF00424427  1
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