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Joseph A. Krzycki - Publications

Affiliations: 
Ohio State University, Columbus, Columbus, OH 
Area:
Molecular Biology, Microbiology Biology
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49 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Borton MA, Shaffer M, Hoyt DW, Jiang R, Ellenbogen JB, Purvine S, Nicora CD, Eder EK, Wong AR, Smulian AG, Lipton MS, Krzycki JA, Wrighton KC. Targeted curation of the gut microbial gene content modulating human cardiovascular disease. Mbio. e0151123. PMID 37695138 DOI: 10.1128/mbio.01511-23  0.516
2023 Li J, Kang PT, Jiang R, Lee JY, Soares JA, Krzycki JA, Chan MK. Insights into pyrrolysine function from structures of a trimethylamine methyltransferase and its corrinoid protein complex. Communications Biology. 6: 54. PMID 36646841 DOI: 10.1038/s42003-022-04397-3  0.725
2021 Ellenbogen JB, Jiang R, Kountz DJ, Zhang L, Krzycki JA. The MttB superfamily member MtyB from the human gut symbiont Eubacterium limosum is a cobalamin-dependent γ-butyrobetaine methyltransferase. The Journal of Biological Chemistry. 297: 101327. PMID 34688665 DOI: 10.1016/j.jbc.2021.101327  0.583
2020 Huening KA, Jiang R, Krzycki JA. Kinetic and substrate complex characterization of RamA, a corrinoid protein reductive activase from Methanosarcina barkeri. Fems Microbiology Letters. PMID 32840570 DOI: 10.1093/Femsle/Fnaa128  0.602
2020 Kountz DJ, Behrman EJ, Zhang L, Krzycki JA. MtcB, a member of the MttB superfamily from the human gut acetogen Eubacterium limosum, is a cobalamin-dependent carnitine demethylase. The Journal of Biological Chemistry. PMID 32571881 DOI: 10.1074/Jbc.Ra120.012934  0.459
2019 Picking JW, Behrman EJ, Zhang L, Krzycki JA. MtpB, a member of the MttB superfamily from the human intestinal acetogen , catalyzes proline betaine demethylation. The Journal of Biological Chemistry. PMID 31341018 DOI: 10.1074/Jbc.Ra119.009886  0.458
2014 Ticak T, Kountz DJ, Girosky KE, Krzycki JA, Ferguson DJ. A nonpyrrolysine member of the widely distributed trimethylamine methyltransferase family is a glycine betaine methyltransferase. Proceedings of the National Academy of Sciences of the United States of America. 111: E4668-76. PMID 25313086 DOI: 10.1073/Pnas.1409642111  0.64
2013 Krzycki JA. The path of lysine to pyrrolysine. Current Opinion in Chemical Biology. 17: 619-25. PMID 23856058 DOI: 10.1016/J.Cbpa.2013.06.023  0.416
2012 Jiang R, Krzycki JA. PylSn and the homologous N-terminal domain of pyrrolysyl-tRNA synthetase bind the tRNA that is essential for the genetic encoding of pyrrolysine. The Journal of Biological Chemistry. 287: 32738-46. PMID 22851181 DOI: 10.1074/Jbc.M112.396754  0.601
2012 Ferguson T, Soares JA, Lienard T, Gottschalk G, Krzycki JA. RamA, a protein required for reductive activation of corrinoid-dependent methylamine methyltransferase reactions in methanogenic Archaea (Journal of Biological Chemistry (2009) 284, (2285-2295)) Journal of Biological Chemistry. 287: 9328. DOI: 10.1074/jbc.A111.807392  0.594
2011 Gaston MA, Jiang R, Krzycki JA. Functional context, biosynthesis, and genetic encoding of pyrrolysine. Current Opinion in Microbiology. 14: 342-9. PMID 21550296 DOI: 10.1016/J.Mib.2011.04.001  0.769
2011 Gaston MA, Zhang L, Green-Church KB, Krzycki JA. The complete biosynthesis of the genetically encoded amino acid pyrrolysine from lysine. Nature. 471: 647-50. PMID 21455182 DOI: 10.1038/Nature09918  0.73
2011 Ferguson DJ, Longstaff DG, Krzycki JA. Assay of methylotrophic methyltransferases from methanogenic archaea. Methods in Enzymology. 494: 139-58. PMID 21402214 DOI: 10.1016/B978-0-12-385112-3.00008-1  0.641
2010 Rother M, Krzycki JA. Selenocysteine, pyrrolysine, and the unique energy metabolism of methanogenic archaea. Archaea (Vancouver, B.C.). 2010. PMID 20847933 DOI: 10.1155/2010/453642  0.333
2009 Li WT, Mahapatra A, Longstaff DG, Bechtel J, Zhao G, Kang PT, Chan MK, Krzycki JA. Specificity of pyrrolysyl-tRNA synthetase for pyrrolysine and pyrrolysine analogs. Journal of Molecular Biology. 385: 1156-64. PMID 19063902 DOI: 10.1016/J.Jmb.2008.11.032  0.626
2009 Ferguson T, Soares JA, Lienard T, Gottschalk G, Krzycki JA. RamA, a protein required for reductive activation of corrinoid-dependent methylamine methyltransferase reactions in methanogenic archaea. The Journal of Biological Chemistry. 284: 2285-95. PMID 19043046 DOI: 10.1074/Jbc.M807392200  0.705
2008 Lee MM, Jiang R, Jain R, Larue RC, Krzycki J, Chan MK. Structure of Desulfitobacterium hafniense PylSc, a pyrrolysyl-tRNA synthetase. Biochemical and Biophysical Research Communications. 374: 470-4. PMID 18656445 DOI: 10.1016/J.Bbrc.2008.07.074  0.632
2008 Gong W, Hao B, Wei Z, Ferguson DJ, Tallant T, Krzycki JA, Chan MK. Structure of the alpha2epsilon2 Ni-dependent CO dehydrogenase component of the Methanosarcina barkeri acetyl-CoA decarbonylase/synthase complex. Proceedings of the National Academy of Sciences of the United States of America. 105: 9558-63. PMID 18621675 DOI: 10.1073/Pnas.0800415105  0.741
2007 Mahapatra A, Srinivasan G, Richter KB, Meyer A, Lienard T, Zhang JK, Zhao G, Kang PT, Chan M, Gottschalk G, Metcalf WW, Krzycki JA. Class I and class II lysyl-tRNA synthetase mutants and the genetic encoding of pyrrolysine in Methanosarcina spp. Molecular Microbiology. 64: 1306-18. PMID 17542922 DOI: 10.1111/J.1365-2958.2007.05740.X  0.702
2007 Longstaff DG, Larue RC, Faust JE, Mahapatra A, Zhang L, Green-Church KB, Krzycki JA. A natural genetic code expansion cassette enables transmissible biosynthesis and genetic encoding of pyrrolysine. Proceedings of the National Academy of Sciences of the United States of America. 104: 1021-6. PMID 17204561 DOI: 10.1073/Pnas.0610294104  0.621
2007 Longstaff DG, Blight SK, Zhang L, Green-Church KB, Krzycki JA. In vivo contextual requirements for UAG translation as pyrrolysine. Molecular Microbiology. 63: 229-41. PMID 17140411 DOI: 10.1111/J.1365-2958.2006.05500.X  0.743
2006 Mahapatra A, Patel A, Soares JA, Larue RC, Zhang JK, Metcalf WW, Krzycki JA. Characterization of a Methanosarcina acetivorans mutant unable to translate UAG as pyrrolysine. Molecular Microbiology. 59: 56-66. PMID 16359318 DOI: 10.1111/J.1365-2958.2005.04927.X  0.73
2005 Krzycki JA. The direct genetic encoding of pyrrolysine. Current Opinion in Microbiology. 8: 706-12. PMID 16256420 DOI: 10.1016/J.Mib.2005.10.009  0.399
2005 Soares JA, Zhang L, Pitsch RL, Kleinholz NM, Jones RB, Wolff JJ, Amster J, Green-Church KB, Krzycki JA. The residue mass of L-pyrrolysine in three distinct methylamine methyltransferases. The Journal of Biological Chemistry. 280: 36962-9. PMID 16096277 DOI: 10.1074/Jbc.M506402200  0.647
2005 Stamper DM, Krzycki JA, Nicomrat D, Traina SJ, Tuovinen OH. Ring-cleaving cyanuric acid amidohydrolase activity in the atrazine-mineralizing Ralstonia basilensis M91-3 Biocatalysis and Biotransformation. 23: 387-396. DOI: 10.1080/10242420500372260  0.362
2004 Krzycki JA. Function of genetically encoded pyrrolysine in corrinoid-dependent methylamine methyltransferases. Current Opinion in Chemical Biology. 8: 484-91. PMID 15450490 DOI: 10.1016/J.Cbpa.2004.08.012  0.471
2004 Hao B, Zhao G, Kang PT, Soares JA, Ferguson TK, Gallucci J, Krzycki JA, Chan MK. Reactivity and chemical synthesis of L-pyrrolysine- the 22(nd) genetically encoded amino acid. Chemistry & Biology. 11: 1317-24. PMID 15380192 DOI: 10.1016/J.Chembiol.2004.07.011  0.629
2004 Blight SK, Larue RC, Mahapatra A, Longstaff DG, Chang E, Zhao G, Kang PT, Green-Church KB, Chan MK, Krzycki JA. Direct charging of tRNA(CUA) with pyrrolysine in vitro and in vivo. Nature. 431: 333-5. PMID 15329732 DOI: 10.1038/Nature02895  0.752
2004 Arndt JW, Chen KHC, Zhong X, Krzycki JA, Chan MK. Support for nickel as the labile metal in the A-center of the M. barkeri acetyl-CoA decarbonylase/synthase complex Journal of the Chinese Chemical Society. 51: 1253-1258. DOI: 10.1002/Jccs.200400181  0.318
2004 Blight SK, Larue RC, Mahapatra A, Longstaff DG, Chang E, Zhao G, Kang PT, Green-Church KB, Chan MK, Krzycki JA. Direct charging of tRNACUA with pyrrolysine in vitro and in vivo Chemtracts. 17: 503-507.  0.711
2002 Hao B, Gong W, Ferguson TK, James CM, Krzycki JA, Chan MK. A new UAG-encoded residue in the structure of a methanogen methyltransferase. Science (New York, N.Y.). 296: 1462-6. PMID 12029132 DOI: 10.1126/Science.1069556  0.395
2002 Srinivasan G, James CM, Krzycki JA. Pyrrolysine encoded by UAG in Archaea: charging of a UAG-decoding specialized tRNA. Science (New York, N.Y.). 296: 1459-62. PMID 12029131 DOI: 10.1126/Science.1069588  0.627
2001 Tallant TC, Paul L, Krzycki JA. The MtsA subunit of the methylthiol:coenzyme M methyltransferase of Methanosarcina barkeri catalyses both half-reactions of corrinoid-dependent dimethylsulfide: coenzyme M methyl transfer. The Journal of Biological Chemistry. 276: 4485-93. PMID 11073950 DOI: 10.1074/Jbc.M007514200  0.765
2000 Ferguson DJ, Gorlatova N, Grahame DA, Krzycki JA. Reconstitution of dimethylamine:coenzyme M methyl transfer with a discrete corrinoid protein and two methyltransferases purified from Methanosarcina barkeri. The Journal of Biological Chemistry. 275: 29053-60. PMID 10852929 DOI: 10.1074/jbc.M910218199  0.597
2000 Paul L, Ferguson DJ, Krzycki JA. The trimethylamine methyltransferase gene and multiple dimethylamine methyltransferase genes of Methanosarcina barkeri contain in-frame and read-through amber codons. Journal of Bacteriology. 182: 2520-9. PMID 10762254 DOI: 10.1128/Jb.182.9.2520-2529.2000  0.62
1998 Burke SA, Lo SL, Krzycki JA. Clustered genes encoding the methyltransferases of methanogenesis from monomethylamine Journal of Bacteriology. 180: 3432-3440. PMID 9642198 DOI: 10.1128/Jb.180.13.3432-3440.1998  0.466
1997 Tallant TC, Krzycki JA. Methylthiol:coenzyme M methyltransferase from Methanosarcina barkeri, an enzyme of methanogenesis from dimethylsulfide and methylmercaptopropionate. Journal of Bacteriology. 179: 6902-11. PMID 9371433 DOI: 10.1128/Jb.179.22.6902-6911.1997  0.786
1997 Burke SA, Krzycki JA. Reconstitution of monomethylamine:coenzyme M methyl transfer with a corrinoid protein and two methyltransferases purified from Methanosarcina barkeri Journal of Biological Chemistry. 272: 16570-16577. PMID 9195968 DOI: 10.1074/Jbc.272.26.16570  0.431
1997 Ferguson DJ, Krzycki JA. Reconstitution of trimethylamine-dependent coenzyme M methylation with the trimethylamine corrinoid protein and the isozymes of methyltransferase II from Methanosarcina barkeri. Journal of Bacteriology. 179: 846-52. PMID 9006042 DOI: 10.1128/Jb.179.3.846-852.1997  0.655
1996 Paul L, Krzycki JA. Sequence and transcript analysis of a novel Methanosarcina barkeri methyltransferase II homolog and its associated corrinoid protein homologous to methionine synthase Journal of Bacteriology. 178: 6599-6607. PMID 8932317 DOI: 10.1128/Jb.178.22.6599-6607.1996  0.404
1996 Tallant TC, Krzycki JA. Coenzyme M methylase activity of the 480-kilodalton corrinoid protein from Methanosarcina barkeri. Journal of Bacteriology. 178: 1295-301. PMID 8631705 DOI: 10.1128/Jb.178.5.1295-1301.1996  0.789
1996 Ferguson DJ, Krzycki JA, Grahame DA. Specific roles of methylcobamide:coenzyme M methyltransferase isozymes in metabolism of methanol and methylamines in Methanosarcina barkeri. The Journal of Biological Chemistry. 271: 5189-94. PMID 8617801 DOI: 10.1074/Jbc.271.9.5189  0.597
1995 Burke SA, Krzycki JA. Involvement of the 'A' isozyme of methyltransferase II and the 29- kilodalton corrinoid protein in methanogenesis from monomethylamine Journal of Bacteriology. 177: 4410-4416. PMID 7635826 DOI: 10.1128/Jb.177.15.4410-4416.1995  0.473
1994 Kremer J, Burchfield S, Frazier C, Krzycki J. Differential in vitro methylation and synthesis of the 480-kilodalton corrinoid protein in Methanosarcina barkeri grown on different substrates. Journal of Bacteriology. 176: 253-5. PMID 8282704 DOI: 10.1128/Jb.176.1.253-255.1994  0.415
1993 Kremer JD, Cao X, Krzycki J. Isolation of two novel corrinoid proteins from acetate-grown Methanosarcina barkeri. Journal of Bacteriology. 175: 4824-33. PMID 8335638 DOI: 10.1128/Jb.175.15.4824-4833.1993  0.443
1991 Cao X, Krzycki JA. Acetate-dependent methylation of two corrinoid proteins in extracts of Methanosarcina barkeri Journal of Bacteriology. 173: 5439-5448. PMID 1885523 DOI: 10.1128/Jb.173.17.5439-5448.1991  0.433
1990 Sandman K, Krzycki JA, Dobrinski B, Lurz R, Reeve JN. HMf, a DNA-binding protein isolated from the hyperthermophilic archaeon Methanothermus fervidus, is most closely related to histones Proceedings of the National Academy of Sciences of the United States of America. 87: 5788-5791. PMID 2377617 DOI: 10.1073/Pnas.87.15.5788  0.335
1989 Lunnen KD, Morgan RD, Timan CJ, Krzycki JA, Reeve JN, Wilson GG. Characterization and cloning of MwoI (GCN7GC), a new type-II restriction-modification system from Methanobacterium wolfei Gene. 77: 11-19. PMID 2663652 DOI: 10.1016/0378-1119(89)90354-5  0.333
1989 Reeve JN, Beckler GS, Cram DS, Hamilton PT, Brown JW, Krzycki JA, Kolodziej AF, Alex L, Orme-Johnson WH, Walsh CT. A hydrogenase-linked gene in Methanobacterium thermoautotrophicum strain delta H encodes a polyferredoxin. Proceedings of the National Academy of Sciences of the United States of America. 86: 3031-5. PMID 2654933 DOI: 10.1073/Pnas.86.9.3031  0.353
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