Michael Ibba - Publications

Affiliations: 
Ohio State University, Columbus, Columbus, OH 
Area:
Microbiology Biology
Website:
https://microbiology.osu.edu/people/ibba.1

171 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Han NC, Bullwinkle TJ, Loeb KF, Faull KF, Mohler K, Rinehart J, Ibba M. The mechanism of β-N-methylamino-L-alanine inhibition of tRNA aminoacylation and its impact on misincorporation. The Journal of Biological Chemistry. PMID 31862734 DOI: 10.1074/jbc.RA119.011714  0.68
2019 Kelly P, Backes N, Mohler K, Buser C, Kavoor A, Rinehart J, Phillips G, Ibba M. Alanyl-tRNA Synthetase Quality Control Prevents Global Dysregulation of the Escherichia coli Proteome. Mbio. 10. PMID 31848288 DOI: 10.1128/mBio.02921-19  0.68
2019 Chakraborty S, Ibba M, Banerjee R. Biophysical characterization of Alpers encephalopathy associated mutants of human mitochondrial phenylalanyl-tRNA synthetase. Iubmb Life. PMID 31241862 DOI: 10.1002/iub.2114  0.56
2018 Chakraborty S, Ganguli S, Chowdhury A, Ibba M, Banerjee R. Reversible inactivation of yeast mitochondrial phenylalanyl-tRNA synthetase under oxidative stress. Biochimica Et Biophysica Acta. PMID 29723545 DOI: 10.1016/j.bbagen.2018.04.023  0.56
2017 Mohler K, Mann R, Kyle A, Reynolds N, Ibba M. Aminoacyl-tRNA Quality Control is Required for Efficient Activation of the TOR Pathway Regulator Gln3p. Rna Biology. 0. PMID 28910581 DOI: 10.1080/15476286.2017.1379635  0.68
2017 Mohler K, Ibba M. Translational fidelity and mistranslation in the cellular response to stress. Nature Microbiology. 2: 17117. PMID 28836574 DOI: 10.1038/nmicrobiol.2017.117  0.68
2017 Wang S, Corcilius L, Sharp PP, Rajkovic A, Ibba M, Parker BL, Payne RJ. Synthesis of rhamnosylated arginine glycopeptides and determination of the glycosidic linkage in bacterial elongation factor P. Chemical Science. 8: 2296-2302. PMID 28451332 DOI: 10.1039/c6sc03847f  0.52
2017 Chaliotis A, Vlastaridis P, Mossialos D, Ibba M, Becker HD, Stathopoulos C, Amoutzias GD. The complex evolutionary history of aminoacyl-tRNA synthetases. Nucleic Acids Research. 45: 1059-1068. PMID 28180287 DOI: 10.1093/nar/gkw1182  1
2017 Mohler K, Mann R, Bullwinkle TJ, Hopkins K, Hwang L, Reynolds NM, Gassaway B, Aerni HR, Rinehart J, Polymenis M, Faull K, Ibba M. Editing of misaminoacylated tRNA controls the sensitivity of amino acid stress responses in Saccharomyces cerevisiae. Nucleic Acids Research. PMID 28168297 DOI: 10.1093/nar/gkx077  0.68
2017 Kermgard E, Yang Z, Michel AM, Simari R, Wong J, Ibba M, Lazazzera BA. Quality Control by Isoleucyl-tRNA Synthetase of Bacillus subtilis Is Required for Efficient Sporulation. Scientific Reports. 7: 41763. PMID 28139725 DOI: 10.1038/srep41763  0.56
2017 Mohler K, Aerni HR, Gassaway B, Ling J, Ibba M, Rinehart J. MS-READ: Quantitative Measurement of Amino Acid Incorporation. Biochimica Et Biophysica Acta. PMID 28130155 DOI: 10.1016/j.bbagen.2017.01.025  0.68
2016 Chaliotis A, Vlastaridis P, Mossialos D, Ibba M, Becker HD, Stathopoulos C, Amoutzias GD. The complex evolutionary history of aminoacyl-tRNA synthetases. Nucleic Acids Research. PMID 27903912 DOI: 10.1093/nar/gkw1182  1
2016 Mohler K, Mann R, Ibba M. Isoacceptor specific characterization of tRNA aminoacylation and misacylation in vivo. Methods (San Diego, Calif.). PMID 27639881 DOI: 10.1016/j.ymeth.2016.09.003  0.68
2016 Katz A, Elgamal S, Rajkovic A, Ibba M. Non-canonical roles of tRNAs and tRNA mimics in bacterial cell biology. Molecular Microbiology. PMID 27169680 DOI: 10.1111/mmi.13419  1
2016 Rajkovic A, Hummels KR, Witzky A, Erickson S, Gafken PR, Whitelegge JP, Faull KF, Kearns DB, Ibba M. Translation control of swarming proficiency in Bacillus subtilis by 5-amino-pentanolylated elongation factor P. The Journal of Biological Chemistry. PMID 27002156 DOI: 10.1074/jbc.M115.712091  1
2016 Bullwinkle TJ, Ibba M. Translation quality control is critical for bacterial responses to amino acid stress. Proceedings of the National Academy of Sciences of the United States of America. 113: 2252-7. PMID 26858451 DOI: 10.1073/pnas.1525206113  1
2015 Rajkovic A, Erickson S, Witzky A, Branson OE, Seo J, Gafken PR, Frietas MA, Whitelegge JP, Faull KF, Navarre W, Darwin AJ, Ibba M. Cyclic Rhamnosylated Elongation Factor P Establishes Antibiotic Resistance in Pseudomonas aeruginosa. Mbio. 6: e00823. PMID 26060278 DOI: 10.1128/mBio.00823-15  1
2015 Shepherd J, Ibba M. Bacterial transfer RNAs. Fems Microbiology Reviews. 39: 280-300. PMID 25796611 DOI: 10.1093/femsre/fuv004  1
2015 Ibba M. Transfer RNA comes of age. Rna (New York, N.Y.). 21: 648-9. PMID 25780175 DOI: 10.1261/rna.050179.115  1
2015 Williams-Wagner RN, Grundy FJ, Raina M, Ibba M, Henkin TM. The Bacillus subtilis tyrZ gene encodes a highly selective tyrosyl tRNA synthetase and is regulated by a MarR regulator and T box riboswitch Journal of Bacteriology. 197: 1624-1631. DOI: 10.1128/JB.00008-15  1
2014 Farah C, Levicán G, Ibba M, Orellana O. Effect of hydrogen peroxide on the biosynthesis of heme and proteins: potential implications for the partitioning of Glu-tRNA(Glu) between these pathways. International Journal of Molecular Sciences. 15: 23011-23. PMID 25514408 DOI: 10.3390/ijms151223011  1
2014 Kobayashi K, Katz A, Rajkovic A, Ishii R, Branson OE, Freitas MA, Ishitani R, Ibba M, Nureki O. The non-canonical hydroxylase structure of YfcM reveals a metal ion-coordination motif required for EF-P hydroxylation. Nucleic Acids Research. 42: 12295-305. PMID 25274739 DOI: 10.1093/nar/gku898  1
2014 Moghal A, Mohler K, Ibba M. Mistranslation of the genetic code. Febs Letters. 588: 4305-10. PMID 25220850 DOI: 10.1016/j.febslet.2014.08.035  1
2014 Shepherd J, Ibba M. Relaxed substrate specificity leads to extensive tRNA mischarging by Streptococcus pneumoniae class I and class II aminoacyl-tRNA synthetases. Mbio. 5: e01656-14. PMID 25205097 DOI: 10.1128/mBio.01656-14  1
2014 Bullwinkle T, Lazazzera B, Ibba M. Quality control and infiltration of translation by amino acids outside of the genetic code. Annual Review of Genetics. 48: 149-66. PMID 25195507 DOI: 10.1146/annurev-genet-120213-092101  1
2014 Hersch SJ, Elgamal S, Katz A, Ibba M, Navarre WW. Translation initiation rate determines the impact of ribosome stalling on bacterial protein synthesis. The Journal of Biological Chemistry. 289: 28160-71. PMID 25148683 DOI: 10.1074/jbc.M114.593277  1
2014 Elgamal S, Katz A, Hersch SJ, Newsom D, White P, Navarre WW, Ibba M. EF-P dependent pauses integrate proximal and distal signals during translation. Plos Genetics. 10: e1004553. PMID 25144653 DOI: 10.1371/journal.pgen.1004553  1
2014 Raina M, Ibba M. tRNAs as regulators of biological processes. Frontiers in Genetics. 5: 171. PMID 24966867 DOI: 10.3389/fgene.2014.00171  1
2014 Bullwinkle TJ, Reynolds NM, Raina M, Moghal A, Matsa E, Rajkovic A, Kayadibi H, Fazlollahi F, Ryan C, Howitz N, Faull KF, Lazazzera BA, Ibba M. Oxidation of cellular amino acid pools leads to cytotoxic mistranslation of the genetic code. Elife. 3. PMID 24891238 DOI: 10.7554/eLife.02501  1
2014 Raina M, Moghal A, Kano A, Jerums M, Schnier PD, Luo S, Deshpande R, Bondarenko PV, Lin H, Ibba M. Reduced amino acid specificity of mammalian tyrosyl-tRNA synthetase is associated with elevated mistranslation of Tyr codons. The Journal of Biological Chemistry. 289: 17780-90. PMID 24828507 DOI: 10.1074/jbc.M114.564609  1
2014 Dare K, Shepherd J, Roy H, Seveau S, Ibba M. LysPGS formation in Listeria monocytogenes has broad roles in maintaining membrane integrity beyond antimicrobial peptide resistance. Virulence. 5: 534-46. PMID 24603093 DOI: 10.4161/viru.28359  1
2014 Fredrick K, Ibba M. The ABCs of the ribosome. Nature Structural & Molecular Biology. 21: 115-6. PMID 24500425 DOI: 10.1038/nsmb.2765  1
2014 Katz A, Solden L, Zou SB, Navarre WW, Ibba M. Molecular evolution of protein-RNA mimicry as a mechanism for translational control. Nucleic Acids Research. 42: 3261-71. PMID 24335280 DOI: 10.1093/nar/gkt1296  1
2014 Bullwinkle TJ, Ibba M. Emergence and evolution. Topics in Current Chemistry. 344: 43-87. PMID 23478877 DOI: 10.1007/128_2013_423  1
2013 Shepherd J, Ibba M. Direction of aminoacylated transfer RNAs into antibiotic synthesis and peptidoglycan-mediated antibiotic resistance. Febs Letters. 587: 2895-904. PMID 23907010 DOI: 10.1016/j.febslet.2013.07.036  1
2013 Shepherd J, Ibba M. Lipid II-independent trans editing of mischarged tRNAs by the penicillin resistance factor MurM. The Journal of Biological Chemistry. 288: 25915-23. PMID 23867453 DOI: 10.1074/jbc.M113.479824  1
2013 Ibba M. Spotlight on… Michael Ibba. Interview by Daniela Ruffell. Febs Letters. 587: 2289-90. PMID 23831577 DOI: 10.1016/j.febslet.2013.07.001  1
2013 Hersch SJ, Wang M, Zou SB, Moon KM, Foster LJ, Ibba M, Navarre WW. Divergent protein motifs direct elongation factor P-mediated translational regulation in Salmonella enterica and Escherichia coli. Mbio. 4: e00180-13. PMID 23611909 DOI: 10.1128/mBio.00180-13  1
2013 Bullwinkle TJ, Zou SB, Rajkovic A, Hersch SJ, Elgamal S, Robinson N, Smil D, Bolshan Y, Navarre WW, Ibba M. (R)-β-lysine-modified elongation factor P functions in translation elongation. The Journal of Biological Chemistry. 288: 4416-23. PMID 23277358 DOI: 10.1074/jbc.M112.438879  1
2013 Yadavalli SS, Ibba M. Selection of tRNA charging quality control mechanisms that increase mistranslation of the genetic code. Nucleic Acids Research. 41: 1104-12. PMID 23222133 DOI: 10.1093/nar/gks1240  1
2012 Raina M, Ibba M. Taking AIM at the start of translation. Journal of Molecular Biology. 423: 473-4. PMID 22925579 DOI: 10.1016/j.jmb.2012.08.018  1
2012 Elo JM, Yadavalli SS, Euro L, Isohanni P, Götz A, Carroll CJ, Valanne L, Alkuraya FS, Uusimaa J, Paetau A, Caruso EM, Pihko H, Ibba M, Tyynismaa H, Suomalainen A. Mitochondrial phenylalanyl-tRNA synthetase mutations underlie fatal infantile Alpers encephalopathy. Human Molecular Genetics. 21: 4521-9. PMID 22833457 DOI: 10.1093/hmg/dds294  0.52
2012 Rogers TE, Ataide SF, Dare K, Katz A, Seveau S, Roy H, Ibba M. A pseudo-tRNA modulates antibiotic resistance in Bacillus cereus. Plos One. 7: e41248. PMID 22815980 DOI: 10.1371/journal.pone.0041248  1
2012 Raina M, Elgamal S, Santangelo TJ, Ibba M. Association of a multi-synthetase complex with translating ribosomes in the archaeon Thermococcus kodakarensis. Febs Letters. 586: 2232-8. PMID 22683511 DOI: 10.1016/j.febslet.2012.05.039  1
2012 Greber BJ, Boehringer D, Godinic-Mikulcic V, Crnkovic A, Ibba M, Weygand-Durasevic I, Ban N. Cryo-EM structure of the archaeal 50S ribosomal subunit in complex with initiation factor 6 and implications for ribosome evolution. Journal of Molecular Biology. 418: 145-60. PMID 22306461 DOI: 10.1016/j.jmb.2012.01.018  1
2012 Dare K, Ibba M. Roles of tRNA in cell wall biosynthesis. Wiley Interdisciplinary Reviews. Rna. 3: 247-64. PMID 22262511 DOI: 10.1002/wrna.1108  1
2012 Yadavalli SS, Ibba M. Quality control in aminoacyl-tRNA synthesis its role in translational fidelity. Advances in Protein Chemistry and Structural Biology. 86: 1-43. PMID 22243580 DOI: 10.1016/B978-0-12-386497-0.00001-3  1
2012 Zou SB, Hersch SJ, Roy H, Wiggers JB, Leung AS, Buranyi S, Xie JL, Dare K, Ibba M, Navarre WW. Loss of elongation factor P disrupts bacterial outer membrane integrity. Journal of Bacteriology. 194: 413-25. PMID 22081389 DOI: 10.1128/JB.05864-11  1
2012 Navarre WW, Ibba M. Elongation factor P: A role in posttranscriptional control of gene expression Microbe. 7.  1
2011 Gilreath MS, Roy H, Bullwinkle TJ, Katz A, Navarre WW, Ibba M. β-Lysine discrimination by lysyl-tRNA synthetase. Febs Letters. 585: 3284-8. PMID 21925499 DOI: 10.1016/j.febslet.2011.09.008  1
2011 Roy H, Zou SB, Bullwinkle TJ, Wolfe BS, Gilreath MS, Forsyth CJ, Navarre WW, Ibba M. The tRNA synthetase paralog PoxA modifies elongation factor-P with (R)-β-lysine. Nature Chemical Biology. 7: 667-9. PMID 21841797 DOI: 10.1038/nchembio.632  1
2011 Banerjee R, Reynolds NM, Yadavalli SS, Rice C, Roy H, Banerjee P, Alexander RW, Ibba M. Mitochondrial aminoacyl-tRNA synthetase single-nucleotide polymorphisms that lead to defects in refolding but not aminoacylation. Journal of Molecular Biology. 410: 280-93. PMID 21601574 DOI: 10.1016/j.jmb.2011.05.011  1
2011 Zou SB, Roy H, Ibba M, Navarre WW. Elongation factor P mediates a novel post-transcriptional regulatory pathway critical for bacterial virulence. Virulence. 2: 147-51. PMID 21317554  1
2011 Godinic-Mikulcic V, Jaric J, Hausmann CD, Ibba M, Weygand-Durasevic I. An archaeal tRNA-synthetase complex that enhances aminoacylation under extreme conditions. The Journal of Biological Chemistry. 286: 3396-404. PMID 21098026 DOI: 10.1074/jbc.M110.168526  1
2010 Reynolds NM, Lazazzera BA, Ibba M. Cellular mechanisms that control mistranslation. Nature Reviews. Microbiology. 8: 849-56. PMID 21079633 DOI: 10.1038/nrmicro2472  1
2010 Santos MA, Orellana O, Ibba M. Transfer RNA's latest port of call. Rna Biology. 7: 517-20. PMID 21037418 DOI: 10.4161.rna.7.5.13213  1
2010 Weygand-Durasevic I, Ibba M. Cell biology. New roles for codon usage. Science (New York, N.Y.). 329: 1473-4. PMID 20847254 DOI: 10.1126/science.1195567  1
2010 Roy H, Ibba M. Bridging the gap between ribosomal and nonribosomal protein synthesis. Proceedings of the National Academy of Sciences of the United States of America. 107: 14517-8. PMID 20696925 DOI: 10.1073/pnas.1009939107  1
2010 Navarre WW, Zou SB, Roy H, Xie JL, Savchenko A, Singer A, Edvokimova E, Prost LR, Kumar R, Ibba M, Fang FC. PoxA, yjeK, and elongation factor P coordinately modulate virulence and drug resistance in Salmonella enterica. Molecular Cell. 39: 209-21. PMID 20670890 DOI: 10.1016/j.molcel.2010.06.021  1
2010 Katz A, Banerjee R, de Armas M, Ibba M, Orellana O. Redox status affects the catalytic activity of glutamyl-tRNA synthetase. Biochemical and Biophysical Research Communications. 398: 51-5. PMID 20541532 DOI: 10.1016/j.bbrc.2010.06.031  1
2010 Goltermann L, Larsen MS, Banerjee R, Joerger AC, Ibba M, Bentin T. Protein evolution via amino acid and codon elimination. Plos One. 5: e10104. PMID 20436666 DOI: 10.1371/journal.pone.0010104  1
2010 Fredrick K, Ibba M. How the sequence of a gene can tune its translation. Cell. 141: 227-9. PMID 20403320 DOI: 10.1016/j.cell.2010.03.033  1
2010 Reynolds NM, Ling J, Roy H, Banerjee R, Repasky SE, Hamel P, Ibba M. Cell-specific differences in the requirements for translation quality control. Proceedings of the National Academy of Sciences of the United States of America. 107: 4063-8. PMID 20160120 DOI: 10.1073/pnas.0909640107  1
2010 Banerjee R, Chen S, Dare K, Gilreath M, Praetorius-Ibba M, Raina M, Reynolds NM, Rogers T, Roy H, Yadavalli SS, Ibba M. tRNAs: cellular barcodes for amino acids. Febs Letters. 584: 387-95. PMID 19903480 DOI: 10.1016/j.febslet.2009.11.013  1
2009 Yadavalli SS, Klipcan L, Zozulya A, Banerjee R, Svergun D, Safro M, Ibba M. Large-scale movement of functional domains facilitates aminoacylation by human mitochondrial phenylalanyl-tRNA synthetase. Febs Letters. 583: 3204-8. PMID 19737557 DOI: 10.1016/j.febslet.2009.09.008  1
2009 Roy H, Ibba M. Broad range amino acid specificity of RNA-dependent lipid remodeling by multiple peptide resistance factors. The Journal of Biological Chemistry. 284: 29677-83. PMID 19734140 DOI: 10.1074/jbc.M109.046367  1
2009 Zeng Y, Roy H, Patil PB, Ibba M, Chen S. Characterization of two seryl-tRNA synthetases in albomycin-producing Streptomyces sp. strain ATCC 700974. Antimicrobial Agents and Chemotherapy. 53: 4619-27. PMID 19721072 DOI: 10.1128/AAC.00782-09  1
2009 Ataide SF, Rogers TE, Ibba M. The CCA anticodon specifies separate functions inside and outside translation in Bacillus cereus. Rna Biology. 6: 479-87. PMID 19667754  1
2009 Ling J, Reynolds N, Ibba M. Aminoacyl-tRNA synthesis and translational quality control. Annual Review of Microbiology. 63: 61-78. PMID 19379069 DOI: 10.1146/annurev.micro.091208.073210  1
2009 Ling J, So BR, Yadavalli SS, Roy H, Shoji S, Fredrick K, Musier-Forsyth K, Ibba M. Resampling and editing of mischarged tRNA prior to translation elongation. Molecular Cell. 33: 654-60. PMID 19285947 DOI: 10.1016/j.molcel.2009.01.031  1
2009 Fredrick K, Ibba M. Protein synthesis: Errors rectified in retrospect. Nature. 457: 157-8. PMID 19129838 DOI: 10.1038/457157a  1
2009 Roy H, Dare K, Ibba M. Adaptation of the bacterial membrane to changing environments using aminoacylated phospholipids. Molecular Microbiology. 71: 547-50. PMID 19054327 DOI: 10.1111/j.1365-2958.2008.06563.x  1
2008 Yadavalli SS, Musier-Forsyth K, Ibba M. The return of pretransfer editing in protein synthesis Proceedings of the National Academy of Sciences of the United States of America. 105: 19031-19032. PMID 19057010 DOI: 10.1073/pnas.0810781106  1
2008 Hausmann CD, Ibba M. Structural and functional mapping of the archaeal multi-aminoacyl-tRNA synthetase complex. Febs Letters. 582: 2178-82. PMID 18538672 DOI: 10.1016/j.febslet.2008.05.043  1
2008 Hausmann CD, Ibba M. Aminoacyl-tRNA synthetase complexes: molecular multitasking revealed. Fems Microbiology Reviews. 32: 705-21. PMID 18522650 DOI: 10.1111/j.1574-6976.2008.00119.x  1
2008 Roy H, Ibba M. RNA-dependent lipid remodeling by bacterial multiple peptide resistance factors. Proceedings of the National Academy of Sciences of the United States of America. 105: 4667-72. PMID 18305156 DOI: 10.1073/pnas.0800006105  1
2008 Roy H, Ibba M. Monitoring Lys-tRNA(Lys) phosphatidylglycerol transferase activity. Methods (San Diego, Calif.). 44: 164-9. PMID 18241797 DOI: 10.1016/j.ymeth.2007.09.002  1
2008 Ibba M. Methods for studying aminoacyl-tRNA. Methods (San Diego, Calif.). 44: 73. PMID 18241788 DOI: 10.1016/j.ymeth.2008.01.001  1
2007 Ataide SF, Wilson SN, Dang S, Rogers TE, Roy B, Banerjee R, Henkin TM, Ibba M. Mechanisms of resistance to an amino acid antibiotic that targets translation Acs Chemical Biology. 2: 819-827. PMID 18154269 DOI: 10.1021/cb7002253  1
2007 Ling J, Roy H, Qin D, Rubio MA, Alfonzo JD, Fredrick K, Ibba M. Pathogenic mechanism of a human mitochondrial tRNAPhe mutation associated with myoclonic epilepsy with ragged red fibers syndrome. Proceedings of the National Academy of Sciences of the United States of America. 104: 15299-304. PMID 17878308 DOI: 10.1073/pnas.0704441104  1
2007 Ling J, Yadavalli SS, Ibba M. Phenylalanyl-tRNA synthetase editing defects result in efficient mistranslation of phenylalanine codons as tyrosine. Rna (New York, N.Y.). 13: 1881-6. PMID 17804641 DOI: 10.1261/rna.684107  1
2007 Hausmann CD, Praetorius-Ibba M, Ibba M. An aminoacyl-tRNA synthetase:elongation factor complex for substrate channeling in archaeal translation. Nucleic Acids Research. 35: 6094-102. PMID 17766929 DOI: 10.1093/nar/gkm534  1
2007 Levengood JD, Roy H, Ishitani R, Söll D, Nureki O, Ibba M. Anticodon recognition and discrimination by the alpha-helix cage domain of class I lysyl-tRNA synthetase. Biochemistry. 46: 11033-8. PMID 17760422 DOI: 10.1021/bi700815a  1
2007 Godinic V, Mocibob M, Rocak S, Ibba M, Weygand-Durasevic I. Peroxin Pex21p interacts with the C-terminal noncatalytic domain of yeast seryl-tRNA synthetase and forms a specific ternary complex with tRNA(Ser). The Febs Journal. 274: 2788-99. PMID 17451428 DOI: 10.1111/j.1742-4658.2007.05812.x  1
2007 Hausmann CD, Ling J, Ibba M. The unnatural culture of amino acids. Nature Methods. 4: 205-6. PMID 17327846 DOI: 10.1038/nmeth0307-205  1
2007 Ling J, Roy H, Ibba M. Mechanism of tRNA-dependent editing in translational quality control. Proceedings of the National Academy of Sciences of the United States of America. 104: 72-7. PMID 17185419 DOI: 10.1073/pnas.0606272104  1
2007 Praetorius-Ibba M, Hausmann CD, Paras M, Rogers TE, Ibba M. Functional association between three archaeal aminoacyl-tRNA synthetases. The Journal of Biological Chemistry. 282: 3680-7. PMID 17158871 DOI: 10.1074/jbc.M609988200  1
2006 Ataide SF, Ibba M. Small molecules: big players in the evolution of protein synthesis. Acs Chemical Biology. 1: 285-97. PMID 17163757 DOI: 10.1021/cb600200k  1
2006 Roy H, Ibba M. Molecular biology: sticky end in protein synthesis. Nature. 443: 41-2. PMID 16906138 DOI: 10.1038/nature05002  1
2006 Roy H, Ibba M. Phenylalanyl-tRNA synthetase contains a dispensable RNA-binding domain that contributes to the editing of noncognate aminoacyl-tRNA. Biochemistry. 45: 9156-62. PMID 16866361 DOI: 10.1021/bi060549w  1
2006 Metlitskaya A, Kazakov T, Kommer A, Pavlova O, Praetorius-Ibba M, Ibba M, Krasheninnikov I, Kolb V, Khmel I, Severinov K. Aspartyl-tRNA synthetase is the target of peptide nucleotide antibiotic Microcin C. The Journal of Biological Chemistry. 281: 18033-42. PMID 16574659 DOI: 10.1074/jbc.M513174200  1
2006 Wang S, Praetorius-Ibba M, Ataide SF, Roy H, Ibba M. Discrimination of cognate and noncognate substrates at the active site of class I lysyl-tRNA synthetase. Biochemistry. 45: 3646-52. PMID 16533047 DOI: 10.1021/bi0523005  1
2006 Rubio MA, Ragone FL, Gaston KW, Ibba M, Alfonzo JD. C to U editing stimulates A to I editing in the anticodon loop of a cytoplasmic threonyl tRNA in Trypanosoma brucei. The Journal of Biological Chemistry. 281: 115-20. PMID 16269406 DOI: 10.1074/jbc.M510136200  1
2006 Prætorius-Ibba M, Ataide S, Hausmann C, Levengood J, Ling J, Wang S, Roy H, Ibba M. Quality control during aminoacyl-tRNA synthesis Kemija U Industriji/Journal of Chemists and Chemical Engineers. 55: 129-134.  1
2005 Roy H, Ling J, Alfonzo J, Ibba M. Loss of editing activity during the evolution of mitochondrial phenylalanyl-tRNA synthetase. The Journal of Biological Chemistry. 280: 38186-92. PMID 16162501 DOI: 10.1074/jbc.M508281200  1
2005 Ataide SF, Jester BC, Devine KM, Ibba M. Stationary-phase expression and aminoacylation of a transfer-RNA-like small RNA. Embo Reports. 6: 742-7. PMID 16065067 DOI: 10.1038/sj.embor.7400474  1
2005 Praetorius-Ibba M, Rogers TE, Samson R, Kelman Z, Ibba M. Association between Archaeal prolyl- and leucyl-tRNA synthetases enhances tRNA(Pro) aminoacylation. The Journal of Biological Chemistry. 280: 26099-104. PMID 15917221 DOI: 10.1074/jbc.M503539200  1
2005 Ambrogelly A, Frugier M, Ibba M, Söll D, Giegé R. Transfer RNA recognition by class I lysyl-tRNA synthetase from the Lyme disease pathogen Borrelia burgdorferi. Febs Letters. 579: 2629-34. PMID 15862301 DOI: 10.1016/j.febslet.2005.04.001  1
2005 Sauerwald A, Zhu W, Major TA, Roy H, Palioura S, Jahn D, Whitman WB, Yates JR, Ibba M, Söll D. RNA-dependent cysteine biosynthesis in archaea. Science (New York, N.Y.). 307: 1969-72. PMID 15790858 DOI: 10.1126/science.1108329  1
2004 Roy H, Ling J, Irnov M, Ibba M. Post-transfer editing in vitro and in vivo by the beta subunit of phenylalanyl-tRNA synthetase. The Embo Journal. 23: 4639-48. PMID 15526031 DOI: 10.1038/sj.emboj.7600474  1
2004 Ataide SF, Ibba M. Discrimination of cognate and noncognate substrates at the active site of class II lysyl-tRNA synthetase. Biochemistry. 43: 11836-41. PMID 15362869 DOI: 10.1021/bi0490542  1
2004 Korencic D, Ahel I, Schelert J, Sacher M, Ruan B, Stathopoulos C, Blum P, Ibba M, Söll D. A freestanding proofreading domain is required for protein synthesis quality control in Archaea. Proceedings of the National Academy of Sciences of the United States of America. 101: 10260-5. PMID 15240874 DOI: 10.1073/pnas.0403926101  1
2004 Ibba M, Francklyn C. Turning tRNA upside down: When aminoacylation is not a prerequisite to protein synthesis. Proceedings of the National Academy of Sciences of the United States of America. 101: 7493-4. PMID 15138304 DOI: 10.1073/pnas.0402276101  1
2004 Ibba M, Söll D. Aminoacyl-tRNAs: setting the limits of the genetic code. Genes & Development. 18: 731-8. PMID 15082526 DOI: 10.1101/gad.1187404  1
2004 Bentin T, Hamzavi R, Salomonsson J, Roy H, Ibba M, Nielsen PE. Photoreactive bicyclic amino acids as substrates for mutant Escherichia coli phenylalanyl-tRNA synthetases. The Journal of Biological Chemistry. 279: 19839-45. PMID 15004015 DOI: 10.1074/jbc.M401278200  1
2004 Levengood J, Ataide SF, Roy H, Ibba M. Divergence in noncognate amino acid recognition between class I and class II lysyl-tRNA synthetases. The Journal of Biological Chemistry. 279: 17707-14. PMID 14747465 DOI: 10.1074/jbc.M313665200  1
2003 Ahel I, Korencic D, Ibba M, Söll D. Trans-editing of mischarged tRNAs. Proceedings of the National Academy of Sciences of the United States of America. 100: 15422-7. PMID 14663147 DOI: 10.1073/pnas.2136934100  1
2003 Jester BC, Levengood JD, Roy H, Ibba M, Devine KM. Nonorthologous replacement of lysyl-tRNA synthetase prevents addition of lysine analogues to the genetic code. Proceedings of the National Academy of Sciences of the United States of America. 100: 14351-6. PMID 14623972 DOI: 10.1073/pnas.2036253100  1
2003 Polycarpo C, Ambrogelly A, Ruan B, Tumbula-Hansen D, Ataide SF, Ishitani R, Yokoyama S, Nureki O, Ibba M, Söll D. Activation of the pyrrolysine suppressor tRNA requires formation of a ternary complex with class I and class II lysyl-tRNA synthetases. Molecular Cell. 12: 287-94. PMID 14536069 DOI: 10.1016/S1097-2765(03)00280-6  1
2003 Mejlhede N, Monthán A, Theisen M, Ibba M. Differentiation of Borrelia burgdorferi sensu lato strains using class I lysyl-tRNA synthetase-encoding genes. Medical Microbiology and Immunology. 192: 79-83. PMID 12736820 DOI: 10.1007/s00430-002-0149-7  1
2003 Praetorius-Ibba M, Ibba M. Aminoacyl-tRNA synthesis in archaea: different but not unique. Molecular Microbiology. 48: 631-7. PMID 12694610 DOI: 10.1046/j.1365-2958.2003.03330.x  1
2002 Pavlickova P, Jensen NM, Paul H, Schaeferling M, Giammasi C, Kruschina M, Du WD, Theisen M, Ibba M, Ortigao F, Kambhampati D. Antibody detection in human serum using a versatile protein chip platform constructed by applying nanoscale self-assembled architectures on gold. Journal of Proteome Research. 1: 227-31. PMID 12645899 DOI: 10.1021/pr0200036  1
2002 Ambrogelly A, Korencic D, Ibba M. Functional annotation of class I lysyl-tRNA synthetase phylogeny indicates a limited role for gene transfer. Journal of Bacteriology. 184: 4594-600. PMID 12142429 DOI: 10.1128/JB.184.16.4594-4600.2002  1
2002 Ibba M, Söll D. Genetic code: introducing pyrrolysine. Current Biology : Cb. 12: R464-6. PMID 12121639 DOI: 10.1016/S0960-9822(02)00947-8  1
2002 Ibba M. Eyeing up tryptophanyl-tRNA synthetase. Trends in Biochemical Sciences. 27: 227. PMID 12076529  1
2002 Terada T, Nureki O, Ishitani R, Ambrogelly A, Ibba M, Söll D, Yokoyama S. Functional convergence of two lysyl-tRNA synthetases with unrelated topologies. Nature Structural Biology. 9: 257-62. PMID 11887185 DOI: 10.1038/nsb777  1
2002 Ibba M. Biochemistry and bioinformatics: When worlds collide Trends in Biochemical Sciences. 27: 64.  1
2002 Ibba M. Elongating without arms Trends in Biochemical Sciences. 27: 548.  1
2002 Ibba M. DEAD-end job for RNA chaperone Trends in Biochemical Sciences. 27: 446.  1
2002 Ibba M. mRNA decay: The big picture Trends in Biochemical Sciences. 27: 335-336.  1
2001 Stathopoulos C, Ahel I, Ali K, Ambrogelly A, Becker H, Bunjun S, Feng L, Herring S, Jacquin-Becker C, Kobayashi H, Korencic D, Krett B, Mejlhede N, Min B, Nakano H, ... ... Ibba M, et al. Aminoacyl-tRNA synthesis: a postgenomic perspective. Cold Spring Harbor Symposia On Quantitative Biology. 66: 175-83. PMID 12762020  1
2001 Ruan B, Ahel I, Ambrogelly A, Becker HD, Bunjun S, Feng L, Tumbula-Hansen D, Ibba M, Korencic D, Kobayashi H, Jacquin-Becker C, Mejlhede N, Min B, Raczniak G, Rinehart J, et al. Genomics and the evolution of aminoacyl-tRNA synthesis. Acta Biochimica Polonica. 48: 313-21. PMID 11732603  1
2001 McCloskey JA, Graham DE, Zhou S, Crain PF, Ibba M, Konisky J, Söll D, Olsen GJ. Post-transcriptional modification in archaeal tRNAs: identities and phylogenetic relations of nucleotides from mesophilic and hyperthermophilic Methanococcales. Nucleic Acids Research. 29: 4699-706. PMID 11713320  1
2001 Ibba M. Nonsense suppression in Archaea Trends in Biochemical Sciences. 26: 645. PMID 11701313  1
2001 Ibba M. Discriminating right from wrong Science. 294: 70-71. PMID 11588242 DOI: 10.1126/science.1066106  1
2001 Ibba M, Stathopoulos C, Söll D. Protein synthesis: Twenty three amino acids and counting Current Biology. 11. PMID 11509255 DOI: 10.1016/S0960-9822(01)00344-X  1
2001 Mejlhede N, Nielsen PE, Ibba M. Adding new meanings to the genetic code Nature Biotechnology. 19: 532-533. PMID 11385451  1
2001 Ibba M, Söll D. The renaissance of aminoacyl-tRNA synthesis Embo Reports. 2: 382-387. PMID 11375928  1
2001 Raczniak G, Ibba M, Söll D. Genomics-based identification of targets in pathogenic bacteria for potential therapeutic and diagnostic use Toxicology. 160: 181-189. PMID 11246138 DOI: 10.1016/S0300-483X(00)00454-6  1
2001 Ibba M. Nuclear translation: Keeping a lookout for nonsense Trends in Biochemical Sciences. 26: 529.  1
2000 Söll D, Becker HD, Plateau P, Blanquet S, Ibba M. Context-dependent anticodon recognition by class I lysyl-tRNA synthetases Proceedings of the National Academy of Sciences of the United States of America. 97: 14224-14228. PMID 11121028 DOI: 10.1073/pnas.97.26.14224  1
2000 Praetorius-Ibba M, Stange-Thomann N, Kitabatake M, Ali K, Söll I, Carter CW, Ibba M, Söll D. Ancient adaptation of the active site of tryptophanyl-tRNA synthetase for tryptophan binding. Biochemistry. 39: 13136-43. PMID 11052665 DOI: 10.1021/bi001512t  1
2000 Ibba M, Soll D. Aminoacyl-tRNA synthesis. Annual Review of Biochemistry. 69: 617-50. PMID 10966471 DOI: 10.1146/annurev.biochem.69.1.617  1
2000 Ibba M, Becker HD, Stathopoulos C, Tumbula DL, Soll D. Author correction Trends in Biochemical Sciences. 25: 380. PMID 10916157  1
2000 Ibba M, Becker HD, Stathopoulos C, Tumbula DL, Söll D. The Adaptor hypothesis revisited Trends in Biochemical Sciences. 25: 311-316. PMID 10871880 DOI: 10.1016/S0968-0004(00)01600-5  1
2000 Woese CR, Olsen GJ, Ibba M, Söll D. Aminoacyl-tRNA synthetases, the genetic code, and the evolutionary process. Microbiology and Molecular Biology Reviews : Mmbr. 64: 202-36. PMID 10704480  1
2000 Stathopoulos C, Li T, Longman R, Vothknecht UC, Becker HD, Ibba M, Söll D. One polypeptide with two aminoacyl-tRNA synthetase activities Science. 287: 479-482. PMID 10642548 DOI: 10.1126/science.287.5452.479  1
2000 Behrens C, Nielsen JN, Fan XJ, Doisy X, Kim KH, Praetorius-Ibba M, Nielsen PE, Ibba M. Development of strategies for the site-specific in vivo incorporation of photoreactive amino acids: p-Azidophenylalanine, p-acetylphenylalanine and benzofuranylalanine Tetrahedron. 56: 9443-9449.  1
1999 Ibba M, Söll D. Quality control mechanisms during translation Science. 286: 1893-1897. PMID 10583945 DOI: 10.1126/science.286.5446.1893  1
1999 Ibba M, Sever S, Praetorius-Ibba M, Söll D. Transfer RNA identity contributes to transition state stabilization during aminoacyl-tRNA synthesis. Nucleic Acids Research. 27: 3631-7. PMID 10471730 DOI: 10.1093/nar/27.18.3631  1
1999 Tumbula D, Vothknecht UC, Kim HS, Ibba M, Min B, Li T, Pelaschier J, Stathopoulos C, Becker H, Söll D. Archaeal aminoacyl-tRNA synthesis: Diversity replaces dogma Genetics. 152: 1269-1276. PMID 10430557  1
1999 Ibba M, Curnow AW, Bono J, Rosa PA, Woese CR, Söll D. Archaeal aminoacyl-tRNA synthesis: unique determinants of a universal genetic code? The Biological Bulletin. 196: 335-6; discussion 33. PMID 10390832  1
1999 Ibba M, Losey HC, Kawarabayasi Y, Kikuchi H, Bunjun S, Söll D. Substrate recognition by class I lysyl-tRNA synthetases: a molecular basis for gene displacement. Proceedings of the National Academy of Sciences of the United States of America. 96: 418-23. PMID 9892648 DOI: 10.1073/pnas.96.2.418  1
1999 Lenhard B, Orellana O, Ibba M, Weygand-Durašević I. tRNA recognition and evolution of determinants in seryl-tRNA synthesis Nucleic Acids Research. 27: 721-729. PMID 9889265 DOI: 10.1093/nar/27.3.721  1
1999 Ibba M, Bentin T. Denmark lacks coherent policy on basic research [5] Nature. 398: 556.  1
1998 Hong KW, Ibba M, Söll D. Retracing the evolution of amino acid specificity in glutaminyl-tRNA synthetase Febs Letters. 434: 149-154. PMID 9738468 DOI: 10.1016/S0014-5793(98)00968-5  1
1998 Liu J, Ibba M, Hong KW, Söll D. The terminal adenosine of tRNA(Gln) mediates tRNA-dependent amine acid recognition by glutaminyl-tRNA synthetase Biochemistry. 37: 9836-9842. PMID 9657697 DOI: 10.1021/bi980704+  1
1997 Ibba M, Celic I, Curnow A, Kim H, Pelaschier J, Tumbula D, Vothknecht U, Woese C, Söll D. Aminoacyl-tRNA synthesis in Archaea. Nucleic Acids Symposium Series. 305-6. PMID 9586121  1
1997 Ibba M, Bono JL, Rosa PA, Söll D. Archaeal-type lysyl-tRNA synthetase in the Lyme disease spirochete Borrelia burgdorferi Proceedings of the National Academy of Sciences of the United States of America. 94: 14383-14388. PMID 9405621 DOI: 10.1073/pnas.94.26.14383  1
1997 Freist W, Gauss DH, Ibba M, Söll D. Glutaminyl-tRNA synthetase. Biological Chemistry. 378: 1103-17. PMID 9372179  1
1997 Ibba M, Morgan S, Curnow AW, Pridmore DR, Vothknecht UC, Gardner W, Lin W, Woese CR, Söll D. A euryarchaeal lysyl-tRNA synthetase: resemblance to class I synthetases. Science (New York, N.Y.). 278: 1119-22. PMID 9353192 DOI: 10.1126/science.278.5340.1119  1
1997 Ibba M, Curnow AW, Söll D. Aminoacyl-tRNA synthesis: divergent routes to a common goal. Trends in Biochemical Sciences. 22: 39-42. PMID 9048478 DOI: 10.1016/S0968-0004(96)20033-7  1
1996 Thomann' HU, Ibba M, Hong KW, Soil D. Homologous expression and purification of mutants of an essential protein by reverse epitope-tagging Bio/Technology. 14: 50-55. PMID 9636312 DOI: 10.1038/nbt0196-50  1
1996 Ibba M, Hong KW, Söll D. Glutaminyl-tRNA synthetase: From genetics to molecular recognition Genes to Cells. 1: 421-427. PMID 9078373  1
1996 Ibba M. Strategies for in vitro and in vivo translation with non-natural amino acids Biotechnology and Genetic Engineering Reviews. 13: 210-216. PMID 8948113  1
1996 Schimmel P, Musler-Forsyth K, Ibba M, Soll D. 'Distorted' RNA helix recognition [13] Nature. 384: 422. PMID 8945467  1
1996 Kitabatake M, Ibba M, Hong KW, Söll D, Inokuchi H. Genetic analysis of functional connectivity between substrate recognition domains of Escherichia coli glutaminyl-tRNA synthetase Molecular and General Genetics. 252: 717-722. PMID 8917315 DOI: 10.1007/s004380050281  1
1996 Curnow AW, Ibba M, Söll D. tRNA-dependent asparagine formation. Nature. 382: 589-90. PMID 8757127 DOI: 10.1038/382589b0  1
1996 Ibba M, Hong KW, Sherman JM, Sever S, Söll D. Interactions between tRNA identity nucleotides and their recognition sites in glutaminyl-tRNA synthetase determine the cognate amino acid affinity of the enzyme. Proceedings of the National Academy of Sciences of the United States of America. 93: 6953-8. PMID 8692925 DOI: 10.1073/pnas.93.14.6953  1
1996 Ibba M, Soll D. Protein-RNA molecular recognition [7] Nature. 381: 656. PMID 8649510 DOI: 10.1038/381656a0  1
1996 Hong KW, Ibba M, Weygand-Duraševic I, Rogers MJ, Thomann HU, Söll D. Transfer RNA-dependent cognate amino acid recognition by an aminoacyl-tRNA synthetase Embo Journal. 15: 1983-1991. PMID 8617245  1
1995 Ibba M, Thomann HU, Hong KW, Sherman JM, Weygand-Durasevic I, Sever S, Stange-Thomann N, Praetorius M, Söll D. Substrate selection by aminoacyl-tRNA synthetases. Nucleic Acids Symposium Series. 40-2. PMID 8643392  1
1995 Ibba M, Johnson CM, Hennecke H, Fersht AR. Increased rates of tRNA charging through modification of the enzyme-aminoacyl-adenylate complex of phenylalanyl-tRNA synthetase Febs Letters. 358: 293-296. PMID 7843418 DOI: 10.1016/0014-5793(94)01454-9  1
1995 Ibba M, Hennecke H. Relaxing the substrate specificity of an aminoacyl-tRNA synthetase allows in vitro and in vivo synthesis of proteins containing unnatural amino acids Febs Letters. 364: 272-275. PMID 7758582 DOI: 10.1016/0014-5793(95)00408-2  1
1995 Lloyd AJ, Thomann Hu, Ibba M, Soöll D. A broadly applicable continuous spectrophotometric assay for measuring aminoacyl-tRNA synthetase activity Nucleic Acids Research. 23: 2886-2892. PMID 7659511 DOI: 10.1093/nar/23.15.2886  1
1994 Ibba M, Kast P, Hennecke H. Substrate specificity is determined by amino acid binding pocket size in Escherichia coli phenylalanyl-tRNA synthetase Biochemistry. 33: 7107-7112. PMID 8003476  1
1994 Ibba M, Hennecke H. Towards engineering proteins by site-directed incorporation in vivo of non-natural amino acids Bio/Technology. 12: 678-682. PMID 7764911 DOI: 10.1038/nbt0794-678  1
1993 Ibba M, Kuhla J, Smith A, Küenzi M. Stable continuous constitutive expression of a heterologous protein in Saccharomyces cerevisiae without selection pressure Applied Microbiology and Biotechnology. 39: 526-531. PMID 7763923 DOI: 10.1007/BF00205045  1
1993 Ibba M, Bonanus D, Kuhla J, Smith A, Küenzi M. Mode of cultivation is critical for the optimal expression of recombinant Hirudin by Saccharomyces cerevisiae Biotechnology Letters. 15: 667-672. DOI: 10.1007/BF01080137  1
1991 Ibba M, Fynn GH. Two stage methanogenesis of glucose by Acetogenium kivui and acetoclastic methanogenic Sp Biotechnology Letters. 13: 671-676. DOI: 10.1007/BF01086325  1
1987 Ibba M, Taylor SJC, Weedon CM, Mantle PG. Submerged fermentation of Penicillium paxilli biosynthesizing paxilline, a process inhibited by calcium-induced sporulation Journal of General Microbiology. 133: 3109-3119.  1
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