| Year |
Citation |
Score |
| 2024 |
Qayyum MZ, Imashimizu M, Leanca M, Vishwakarma RK, Riaz-Bradley A, Yuzenkova Y, Murakami KS. Structure and function of the Si3 insertion integrated into the trigger loop/helix of cyanobacterial RNA polymerase. Proceedings of the National Academy of Sciences of the United States of America. 121: e2311480121. PMID 38354263 DOI: 10.1073/pnas.2311480121 |
0.379 |
|
| 2024 |
Qayyum MZ, Imashimizu M, Leanca M, Vishwakarma RK, Riaz-Bradley A, Yuzenkova Y, Murakami KS. Structure and function of the Si3 insertion integrated into the trigger loop/helix of cyanobacterial RNA polymerase. Biorxiv : the Preprint Server For Biology. PMID 38260627 DOI: 10.1101/2024.01.11.575193 |
0.379 |
|
| 2023 |
Vishwakarma RK, Qayyum MZ, Babitzke P, Murakami KS. Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase. Proceedings of the National Academy of Sciences of the United States of America. 120: e2218516120. PMID 36745813 DOI: 10.1073/pnas.2218516120 |
0.445 |
|
| 2022 |
Lisitskaya L, Shin Y, Agapov A, Olina A, Kropocheva E, Ryazansky S, Aravin AA, Esyunina D, Murakami KS, Kulbachinskiy A. Author Correction: Programmable RNA targeting by bacterial Argonaute nucleases with unconventional guide binding and cleavage specificity. Nature Communications. 13: 4839. PMID 35978060 DOI: 10.1038/s41467-022-32616-2 |
0.318 |
|
| 2022 |
Lisitskaya L, Shin Y, Agapov A, Olina A, Kropocheva E, Ryazansky S, Aravin AA, Esyunina D, Murakami KS, Kulbachinskiy A. Programmable RNA targeting by bacterial Argonaute nucleases with unconventional guide binding and cleavage specificity. Nature Communications. 13: 4624. PMID 35941106 DOI: 10.1038/s41467-022-32079-5 |
0.41 |
|
| 2022 |
Marshall CJ, Qayyum MZ, Walker JE, Murakami KS, Santangelo TJ. The structure and activities of the archaeal transcription termination factor Eta detail vulnerabilities of the transcription elongation complex. Proceedings of the National Academy of Sciences of the United States of America. 119: e2207581119. PMID 35917344 DOI: 10.1073/pnas.2207581119 |
0.393 |
|
| 2022 |
Portman JR, Qayyum MZ, Murakami KS, Strick TR. On the stability of stalled RNA polymerase and its removal by RapA. Nucleic Acids Research. 50: 7396-7405. PMID 35819188 DOI: 10.1093/nar/gkac558 |
0.412 |
|
| 2021 |
Qayyum MZ, Molodtsov V, Renda A, Murakami KS. Structural basis of RNA polymerase recycling by the Swi2/Snf2 family of ATPase RapA in Escherichia coli. The Journal of Biological Chemistry. 297: 101404. PMID 34774797 DOI: 10.1016/j.jbc.2021.101404 |
0.422 |
|
| 2021 |
Shin Y, Murakami KS. Watching the bacterial RNA polymerase transcription reaction by time-dependent soak-trigger-freeze X-ray crystallography. The Enzymes. 49: 305-314. PMID 34696836 DOI: 10.1016/bs.enz.2021.06.009 |
0.438 |
|
| 2021 |
Mäkinen JJ, Shin Y, Vieras E, Virta P, Metsä-Ketelä M, Murakami KS, Belogurov GA. The mechanism of the nucleo-sugar selection by multi-subunit RNA polymerases. Nature Communications. 12: 796. PMID 33542236 DOI: 10.1038/s41467-021-21005-w |
0.39 |
|
| 2021 |
Shin Y, Qayyum MZ, Pupov D, Esyunina D, Kulbachinskiy A, Murakami KS. Structural basis of ribosomal RNA transcription regulation. Nature Communications. 12: 528. PMID 33483500 DOI: 10.1038/s41467-020-20776-y |
0.476 |
|
| 2020 |
Kouba T, Koval' T, Sudzinová P, Pospíšil J, Brezovská B, Hnilicová J, Šanderová H, Janoušková M, Šiková M, Halada P, Sýkora M, Barvík I, Nováček J, Trundová M, Dušková J, ... ... Murakami KS, et al. Mycobacterial HelD is a nucleic acids-clearing factor for RNA polymerase. Nature Communications. 11: 6419. PMID 33339823 DOI: 10.1038/s41467-020-20158-4 |
0.408 |
|
| 2020 |
Jun SH, Hyun J, Cha JS, Kim H, Bartlett MS, Cho HS, Murakami KS. Direct binding of TFEα opens DNA binding cleft of RNA polymerase. Nature Communications. 11: 6123. PMID 33257704 DOI: 10.1038/s41467-020-19998-x |
0.439 |
|
| 2020 |
Shin Y, Hedglin M, Murakami KS. Structural basis of reiterative transcription from the pyrG and pyrBI promoters by bacterial RNA polymerase. Nucleic Acids Research. PMID 31965171 DOI: 10.1093/Nar/Gkz1221 |
0.463 |
|
| 2019 |
Black SJ, Ozdemir AY, Kashkina E, Kent T, Rusanov T, Ristic D, Shin Y, Suma A, Hoang T, Chandramouly G, Siddique LA, Borisonnik N, Sullivan-Reed K, Mallon JS, Skorski T, ... ... Murakami KS, et al. Molecular basis of microhomology-mediated end-joining by purified full-length Polθ. Nature Communications. 10: 4423. PMID 31562312 DOI: 10.1038/S41467-019-12272-9 |
0.319 |
|
| 2018 |
Pupov D, Petushkov I, Esyunina D, Murakami KS, Kulbachinskiy A. Region 3.2 of the σ factor controls the stability of rRNA promoter complexes and potentiates their repression by DksA. Nucleic Acids Research. PMID 30321408 DOI: 10.1093/nar/gky919 |
0.425 |
|
| 2018 |
Mosaei H, Molodtsov V, Kepplinger B, Harbottle J, Moon CW, Jeeves RE, Ceccaroni L, Shin Y, Morton-Laing S, Marrs ECL, Wills C, Clegg W, Yuzenkova Y, Perry JD, Bacon J, ... ... Murakami KS, et al. Mode of Action of Kanglemycin A, an Ansamycin Natural Product that Is Active against Rifampicin-Resistant Mycobacterium tuberculosis. Molecular Cell. PMID 30244835 DOI: 10.1016/J.Molcel.2018.08.028 |
0.318 |
|
| 2018 |
Sutherland C, Murakami KS. An Introduction to the Structure and Function of the Catalytic Core Enzyme of RNA Polymerase. Ecosal Plus. 8. PMID 30109846 DOI: 10.1128/ecosalplus.ESP-0004-2018 |
0.365 |
|
| 2018 |
Molodtsov V, Murakami KS. Minimalism and functionality: Structural lessons from the heterodimeric N4 bacteriophageRNA polymerase II. The Journal of Biological Chemistry. PMID 29991593 DOI: 10.1074/Jbc.Ra118.003447 |
0.376 |
|
| 2018 |
Narayanan A, Vago FS, Li K, Qayyum MZ, Yernool D, Jiang W, Murakami KS. Cryo-EM structure ofσRNAP and promoter DNA complex revealed a role of σ non-conserved region during the open complex formation. The Journal of Biological Chemistry. PMID 29581236 DOI: 10.1074/Jbc.Ra118.002161 |
0.452 |
|
| 2018 |
Molodtsov V, Sineva E, Zhang L, Huang X, Cashel M, Ades SE, Murakami KS. Allosteric Effector ppGpp Potentiates the Inhibition of Transcript Initiation by DksA. Molecular Cell. PMID 29478808 DOI: 10.1016/J.Molcel.2018.01.035 |
0.425 |
|
| 2017 |
Murakami KS, Shin Y, Turnbough CL, Molodtsov V. X-ray crystal structure of a reiterative transcription complex reveals an atypical RNA extension pathway. Proceedings of the National Academy of Sciences of the United States of America. PMID 28652344 DOI: 10.1073/Pnas.1702741114 |
0.449 |
|
| 2016 |
Gu H, Yoshinari S, Ghosh R, Ignatochkina AV, Gollnick PD, Murakami KS, Ho CK. Structural and mutational analysis of archaeal ATP-dependent RNA ligase identifies amino acids required for RNA binding and catalysis. Nucleic Acids Research. PMID 26896806 DOI: 10.1093/nar/gkw094 |
0.409 |
|
| 2016 |
Yakhnin AV, Murakami KS, Babitzke P. NusG Is a Sequence-specific RNA Polymerase Pause Factor That Binds to the Non-template DNA within the Paused Transcription Bubble. The Journal of Biological Chemistry. 291: 5299-308. PMID 26742846 DOI: 10.1074/Jbc.M115.704189 |
0.553 |
|
| 2015 |
Yang Y, Darbari VC, Zhang N, Lu D, Glyde R, Wang YP, Winkelman JT, Gourse RL, Murakami KS, Buck M, Zhang X. TRANSCRIPTION. Structures of the RNA polymerase-σ54 reveal new and conserved regulatory strategies. Science (New York, N.Y.). 349: 882-5. PMID 26293966 DOI: 10.1126/Science.Aab1478 |
0.405 |
|
| 2015 |
Murakami KS. Structural biology of bacterial RNA polymerase. Biomolecules. 5: 848-64. PMID 25970587 DOI: 10.3390/biom5020848 |
0.349 |
|
| 2015 |
Molodtsov V, Fleming PR, Eyermann CJ, Ferguson AD, Foulk MA, McKinney DC, Masse CE, Buurman ET, Murakami KS. X-ray crystal structures of Escherichia coli RNA polymerase with switch region binding inhibitors enable rational design of squaramides with an improved fraction unbound to human plasma protein. Journal of Medicinal Chemistry. 58: 3156-71. PMID 25798859 DOI: 10.1021/Acs.Jmedchem.5B00050 |
0.405 |
|
| 2015 |
Yang Y, Darbari VC, Zhang N, Lu D, Glyde R, Wang YP, Winkelman JT, Gourse RL, Murakami KS, Buck M, Zhang X. Structures of the RNA polymerase-σ54 reveal new and conserved regulatory strategies Science. 349: 882-885. DOI: 10.1126/science.aab1478 |
0.402 |
|
| 2014 |
Jun SH, Hirata A, Kanai T, Santangelo TJ, Imanaka T, Murakami KS. The X-ray crystal structure of the euryarchaeal RNA polymerase in an open-clamp configuration. Nature Communications. 5: 5132. PMID 25311937 DOI: 10.1038/ncomms6132 |
0.374 |
|
| 2014 |
Basu RS, Warner BA, Molodtsov V, Pupov D, Esyunina D, Fernández-Tornero C, Kulbachinskiy A, Murakami KS. Structural basis of transcription initiation by bacterial RNA polymerase holoenzyme. The Journal of Biological Chemistry. 289: 24549-59. PMID 24973216 DOI: 10.1074/Jbc.M114.584037 |
0.454 |
|
| 2014 |
Murakami K. Watching the RNA Polymerase Transcription by Time-Dependent Soak-Trigger-Freeze X-Ray Crystallography Biophysical Journal. 106: 485a. DOI: 10.1016/J.Bpj.2013.11.4461 |
0.435 |
|
| 2013 |
Molodtsov V, Nawarathne IN, Scharf NT, Kirchhoff PD, Showalter HD, Garcia GA, Murakami KS. X-ray crystal structures of the Escherichia coli RNA polymerase in complex with benzoxazinorifamycins. Journal of Medicinal Chemistry. 56: 4758-63. PMID 23679862 DOI: 10.1021/Jm4004889 |
0.438 |
|
| 2013 |
Murakami KS. X-ray crystal structure of Escherichia coli RNA polymerase σ70 holoenzyme. The Journal of Biological Chemistry. 288: 9126-34. PMID 23389035 DOI: 10.1074/jbc.M112.430900 |
0.382 |
|
| 2013 |
Basu RS, Murakami KS. Watching the bacteriophage N4 RNA polymerase transcription by time-dependent soak-trigger-freeze X-ray crystallography. The Journal of Biological Chemistry. 288: 3305-11. PMID 23235152 DOI: 10.1074/jbc.M112.387712 |
0.332 |
|
| 2012 |
Reichlen MJ, Vepachedu VR, Murakami KS, Ferry JG. MreA functions in the global regulation of methanogenic pathways in Methanosarcina acetivorans. Mbio. 3: e00189-12. PMID 22851658 DOI: 10.1128/Mbio.00189-12 |
0.349 |
|
| 2011 |
Chen Y, Basu R, Gleghorn ML, Murakami KS, Carey PR. Time-resolved events on the reaction pathway of transcript initiation by a single-subunit RNA polymerase: Raman crystallographic evidence. Journal of the American Chemical Society. 133: 12544-55. PMID 21744806 DOI: 10.1021/Ja201557W |
0.753 |
|
| 2011 |
Gleghorn ML, Davydova EK, Basu R, Rothman-Denes LB, Murakami KS. X-ray crystal structures elucidate the nucleotidyl transfer reaction of transcript initiation using two nucleotides. Proceedings of the National Academy of Sciences of the United States of America. 108: 3566-71. PMID 21321236 DOI: 10.1073/Pnas.1016691108 |
0.771 |
|
| 2011 |
Jun SH, Reichlen MJ, Tajiri M, Murakami KS. Archaeal RNA polymerase and transcription regulation. Critical Reviews in Biochemistry and Molecular Biology. 46: 27-40. PMID 21250781 DOI: 10.3109/10409238.2010.538662 |
0.604 |
|
| 2011 |
Klein BJ, Bose D, Baker KJ, Yusoff ZM, Zhang X, Murakami KS. RNA polymerase and transcription elongation factor Spt4/5 complex structure. Proceedings of the National Academy of Sciences of the United States of America. 108: 546-50. PMID 21187417 DOI: 10.1073/Pnas.1013828108 |
0.462 |
|
| 2010 |
Reichlen MJ, Murakami KS, Ferry JG. Functional analysis of the three TATA binding protein homologs in Methanosarcina acetivorans. Journal of Bacteriology. 192: 1511-7. PMID 20081030 DOI: 10.1128/Jb.01165-09 |
0.303 |
|
| 2009 |
Hirata A, Murakami KS. Archaeal RNA polymerase. Current Opinion in Structural Biology. 19: 724-31. PMID 19880312 DOI: 10.1016/j.sbi.2009.10.006 |
0.427 |
|
| 2008 |
Gleghorn ML, Davydova EK, Rothman-Denes LB, Murakami KS. Structural basis for DNA-hairpin promoter recognition by the bacteriophage N4 virion RNA polymerase. Molecular Cell. 32: 707-17. PMID 19061645 DOI: 10.1016/J.Molcel.2008.11.010 |
0.777 |
|
| 2008 |
Suharti S, Murakami KS, de Vries S, Ferry JG. Structural and biochemical characterization of flavoredoxin from the archaeon Methanosarcina acetivorans. Biochemistry. 47: 11528-35. PMID 18842001 DOI: 10.1021/Bi801012P |
0.323 |
|
| 2008 |
Hirata A, Kanai T, Santangelo TJ, Tajiri M, Manabe K, Reeve JN, Imanaka T, Murakami KS. Archaeal RNA polymerase subunits E and F are not required for transcription in vitro, but a Thermococcus kodakarensis mutant lacking subunit F is temperature-sensitive. Molecular Microbiology. 70: 623-33. PMID 18786148 DOI: 10.1111/J.1365-2958.2008.06430.X |
0.554 |
|
| 2008 |
Murakami KS, Davydova EK, Rothman-Denes LB. X-ray crystal structure of the polymerase domain of the bacteriophage N4 virion RNA polymerase. Proceedings of the National Academy of Sciences of the United States of America. 105: 5046-51. PMID 18362338 DOI: 10.1073/Pnas.0712325105 |
0.403 |
|
| 2008 |
Murakami K, Imanishi T, Gojobori T, Nakai K. Two different classes of co-occurring motif pairs found by a novel visualization method in human promoter regions. Bmc Genomics. 9: 112. PMID 18312685 DOI: 10.1186/1471-2164-9-112 |
0.324 |
|
| 2008 |
Hirata A, Klein BJ, Murakami KS. The X-ray crystal structure of RNA polymerase from Archaea. Nature. 451: 851-4. PMID 18235446 DOI: 10.1038/nature06530 |
0.361 |
|
| 2008 |
Yamasaki C, Murakami K, Fujii Y, Sato Y, Harada E, Takeda J, Taniya T, Sakate R, Kikugawa S, Shimada M, Tanino M, Koyanagi KO, Barrero RA, Gough C, et al. The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. Nucleic Acids Research. 36: D793-9. PMID 18089548 DOI: 10.1093/Nar/Gkm999 |
0.304 |
|
| 2006 |
Imashimizu M, Hanaoka M, Seki A, Murakami KS, Tanaka K. The cyanobacterial principal sigma factor region 1.1 is involved in DNA-binding in the free form and in transcription activity as holoenzyme. Febs Letters. 580: 3439-44. PMID 16712841 DOI: 10.1016/j.febslet.2006.05.017 |
0.343 |
|
| 2005 |
Chlenov M, Masuda S, Murakami KS, Nikiforov V, Darst SA, Mustaev A. Structure and function of lineage-specific sequence insertions in the bacterial RNA polymerase beta' subunit. Journal of Molecular Biology. 353: 138-54. PMID 16154587 DOI: 10.1016/J.Jmb.2005.07.073 |
0.551 |
|
| 2004 |
Masuda S, Murakami KS, Wang S, Anders Olson C, Donigian J, Leon F, Darst SA, Campbell EA. Crystal structures of the ADP and ATP bound forms of the Bacillus anti-sigma factor SpoIIAB in complex with the anti-anti-sigma SpoIIAA. Journal of Molecular Biology. 340: 941-56. PMID 15236958 DOI: 10.1016/J.Jmb.2004.05.040 |
0.54 |
|
| 2004 |
Lawson CL, Swigon D, Murakami KS, Darst SA, Berman HM, Ebright RH. Catabolite activator protein: DNA binding and transcription activation. Current Opinion in Structural Biology. 14: 10-20. PMID 15102444 DOI: 10.1016/J.Sbi.2004.01.012 |
0.642 |
|
| 2003 |
Murakami KS, Masuda S, Darst SA. Crystallographic analysis of Thermus aquaticus RNA polymerase holoenzyme and a holoenzyme/promoter DNA complex. Methods in Enzymology. 370: 42-53. PMID 14712632 DOI: 10.1016/S0076-6879(03)70004-4 |
0.68 |
|
| 2003 |
Macchi R, Montesissa L, Murakami K, Ishihama A, De Lorenzo V, Bertoni G. Recruitment of sigma54-RNA polymerase to the Pu promoter of Pseudomonas putida through integration host factor-mediated positioning switch of alpha subunit carboxyl-terminal domain on an UP-like element. The Journal of Biological Chemistry. 278: 27695-702. PMID 12754257 DOI: 10.1074/Jbc.M303031200 |
0.649 |
|
| 2003 |
Murakami KS, Darst SA. Bacterial RNA polymerases: the wholo story. Current Opinion in Structural Biology. 13: 31-9. PMID 12581657 DOI: 10.1016/S0959-440X(02)00005-2 |
0.626 |
|
| 2003 |
Artsimovitch I, Svetlov V, Murakami KS, Landick R. Co-overexpression of Escherichia coli RNA polymerase subunits allows isolation and analysis of mutant enzymes lacking lineage-specific sequence insertions. The Journal of Biological Chemistry. 278: 12344-55. PMID 12511572 DOI: 10.1074/Jbc.M211214200 |
0.389 |
|
| 2002 |
Nickels BE, Dove SL, Murakami KS, Darst SA, Hochschild A. Protein-protein and protein-DNA interactions of sigma70 region 4 involved in transcription activation by lambdacI. Journal of Molecular Biology. 324: 17-34. PMID 12421556 DOI: 10.1016/S0022-2836(02)01043-4 |
0.608 |
|
| 2002 |
Finney AH, Blick RJ, Murakami K, Ishihama A, Stevens AM. Role of the C-terminal domain of the alpha subunit of RNA polymerase in LuxR-dependent transcriptional activation of the lux operon during quorum sensing. Journal of Bacteriology. 184: 4520-8. PMID 12142422 DOI: 10.1128/Jb.184.16.4520-4528.2002 |
0.635 |
|
| 2002 |
Murakami KS, Masuda S, Campbell EA, Muzzin O, Darst SA. Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex. Science (New York, N.Y.). 296: 1285-90. PMID 12016307 DOI: 10.1126/Science.1069595 |
0.681 |
|
| 2002 |
Murakami KS, Masuda S, Darst SA. Structural basis of transcription initiation: RNA polymerase holoenzyme at 4 A resolution. Science (New York, N.Y.). 296: 1280-4. PMID 12016306 DOI: 10.1126/Science.1069594 |
0.652 |
|
| 2001 |
Campbell EA, Korzheva N, Mustaev A, Murakami K, Nair S, Goldfarb A, Darst SA. Structural mechanism for rifampicin inhibition of bacterial rna polymerase. Cell. 104: 901-12. PMID 11290327 DOI: 10.1016/S0092-8674(01)00286-0 |
0.681 |
|
| 2000 |
Otomo T, Yamazaki T, Murakami K, Ishihama A, Kyogoku Y. Structural study of the N-terminal domain of the alpha subunit of Escherichia coli RNA polymerase solubilized with non-denaturing detergents. Journal of Biochemistry. 128: 337-344. PMID 10920271 DOI: 10.1093/Oxfordjournals.Jbchem.A022758 |
0.559 |
|
| 1999 |
Harada Y, Funatsu T, Murakami K, Nonoyama Y, Ishihama A, Yanagida T. Single-molecule imaging of RNA polymerase-DNA interactions in real time Biophysical Journal. 76: 709-715. PMID 9929475 DOI: 10.1016/S0006-3495(99)77237-1 |
0.623 |
|
| 1999 |
Prost JF, Nègre D, Oudot C, Murakami K, Ishihama A, Cozzone AJ, Cortay JC. Cra-dependent transcriptional activation of the icd gene of Escherichia coli. Journal of Bacteriology. 181: 893-8. PMID 9922253 DOI: 10.1128/Jb.181.3.893-898.1999 |
0.643 |
|
| 1999 |
Prost J, Nègre D, Oudot C, Murakami K, Ishihama A, Cozzone AJ, Cortay J. Cra-Dependent Transcriptional Activation of theicd Gene of Escherichia coli Journal of Bacteriology. 181: 893-898. DOI: 10.1128/jb.181.3.893-898.1999 |
0.589 |
|
| 1998 |
Ozoline ON, Fujita N, Murakami K, Ishihama A. Monitoring Of Rna Polymerase-Dna Up Element Interaction By A Fluorescent Probe Conjugated To Alpha Subunit Febs Journal. 253: 371-381. PMID 9654086 DOI: 10.1046/J.1432-1327.1998.2530371.X |
0.636 |
|
| 1998 |
Owens JT, Chmura AJ, Murakami K, Fujita N, Ishihama A, Meares CF. Mapping the promoter DNA sites proximal to conserved regions of sigma 70 in an Escherichia coli RNA polymerase-lacUV5 open promoter complex. Biochemistry. 37: 7670-5. PMID 9601026 DOI: 10.1021/Bi980188N |
0.519 |
|
| 1998 |
Owens JT, Miyake R, Murakami K, Chmura AJ, Fujita N, Ishihama A, Meares CF. Mapping the sigma70 subunit contact sites on Escherichia coli RNA polymerase with a sigma70-conjugated chemical protease. Proceedings of the National Academy of Sciences of the United States of America. 95: 6021-6. PMID 9600910 DOI: 10.1073/Pnas.95.11.6021 |
0.596 |
|
| 1998 |
Nègre D, Oudot C, Prost JF, Murakami K, Ishihama A, Cozzone AJ, Cortay JC. FruR-mediated transcriptional activation at the ppsA promoter of Escherichia coli. Journal of Molecular Biology. 276: 355-65. PMID 9512708 DOI: 10.1006/Jmbi.1997.1548 |
0.683 |
|
| 1998 |
Ozoline ON, Murakami K, Negishi T, Fujita N, Ishihama A. Specific fluorescent labeling of two functional domains in RNA polymerase alpha subunit. Proteins. 30: 183-92. PMID 9489926 DOI: 10.1002/(Sici)1097-0134(19980201)30:2<183::Aid-Prot8>3.0.Co;2-O |
0.591 |
|
| 1998 |
Miyake R, Murakami K, Owens JT, Greiner DP, Ozoline ON, Ishihama A, Meares CF. Dimeric association of Escherichia coli RNA polymerase alpha subunits, studied by cleavage of single-cysteine alpha subunits conjugated to iron-(S)-1-[p-(bromoacetamido)benzyl]ethylenediaminetetraacetate. Biochemistry. 37: 1344-9. PMID 9477962 DOI: 10.1021/Bi9723313 |
0.422 |
|
| 1997 |
Murakami K, Owens JT, Belyaeva TA, Meares CF, Busby SJ, Ishihama A. Positioning of two alpha subunit carboxy-terminal domains of RNA polymerase at promoters by two transcription factors. Proceedings of the National Academy of Sciences of the United States of America. 94: 11274-8. PMID 9326599 DOI: 10.1073/Pnas.94.21.11274 |
0.637 |
|
| 1997 |
Choy HE, Hanger RR, Aki T, Mahoney M, Murakami K, Ishihama A, Adhya S. Repression and activation of promoter-bound RNA polymerase activity by Gal repressor. Journal of Molecular Biology. 272: 293-300. PMID 9325090 DOI: 10.1006/Jmbi.1997.1221 |
0.679 |
|
| 1997 |
Yang J, Murakami K, Camakaris H, Fujita N, Ishihama A, Pittard AJ. Amino acid residues in the alpha-subunit C-terminal domain of Escherichia coli RNA polymerase involved in activation of transcription from the mtr promoter. Journal of Bacteriology. 179: 6187-91. PMID 9324270 DOI: 10.1128/Jb.179.19.6187-6191.1997 |
0.6 |
|
| 1997 |
Murakami K, Kimura M, Owens JT, Meares CF, Ishihama A. The two alpha subunits of Escherichia coli RNA polymerase are asymmetrically arranged and contact different halves of the DNA upstream element. Proceedings of the National Academy of Sciences of the United States of America. 94: 1709-14. PMID 9050843 DOI: 10.1073/Pnas.94.5.1709 |
0.621 |
|
| 1997 |
Boucher PE, Murakami K, Ishihama A, Stibitz S. Nature of DNA binding and RNA polymerase interaction of the Bordetella pertussis BvgA transcriptional activator at the fha promoter. Journal of Bacteriology. 179: 1755-1763. PMID 9045838 DOI: 10.1128/Jb.179.5.1755-1763.1997 |
0.649 |
|
| 1997 |
Tang Y, Murakami K, Ishihama A, deHaseth PL. Upstream interactions at the lambda pRM promoter are sequence nonspecific and activate the promoter to a lesser extent than an introduced UP element of an rRNA promoter. Journal of Bacteriology. 178: 6945-51. PMID 8955318 DOI: 10.1128/Jb.178.23.6945-6951.1996 |
0.591 |
|
| 1996 |
Artsimovitch I, Murakami K, Ishihama A, Howe MM. Transcription activation by the bacteriophage Mu Mor protein requires the C-terminal regions of both alpha and sigma70 subunits of Escherichia coli RNA polymerase. The Journal of Biological Chemistry. 271: 32343-8. PMID 8943297 DOI: 10.1074/Jbc.271.50.32343 |
0.634 |
|
| 1996 |
Giladi H, Murakami K, Ishihama A, Oppenheim AB. Identification of an UP element within the IHF binding site at the PL1-PL2 tandem promoter of bacteriophage lambda. Journal of Molecular Biology. 260: 484-91. PMID 8759315 DOI: 10.1006/Jmbi.1996.0416 |
0.616 |
|
| 1996 |
Murakami K, Fujita N, Ishihama A. Transcription factor recognition surface on the RNA polymerase alpha subunit is involved in contact with the DNA enhancer element. The Embo Journal. 15: 4358-4367. DOI: 10.1002/J.1460-2075.1996.Tb00809.X |
0.634 |
|
| Show low-probability matches. |
