Joshua A. Rosenberg, Ph.D. - Related publications

2007 Vanderbilt University, Nashville, TN 
Cell Biology
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Kato M, Tu BP, McKnight SL. Redox-mediated regulation of low complexity domain self-association. Current Opinion in Genetics & Development. 67: 111-118. PMID 33454579 DOI: 10.1016/j.gde.2020.12.006   
2021 Aiyer S, Swapna GVT, Ma LC, Liu G, Hao J, Chalmers G, Jacobs BC, Montelione GT, Roth MJ. A common binding motif in the ET domain of BRD3 forms polymorphic structural interfaces with host and viral proteins. Structure (London, England : 1993). PMID 33592170 DOI: 10.1016/j.str.2021.01.010   
2021 Preethi D, Anishetty S, Gautam P. Molecular dynamics study of in silico mutations in the auto-inhibitory loop of human endothelial nitric oxide synthase FMN sub-domain. Journal of Molecular Modeling. 27: 63. PMID 33527205 DOI: 10.1007/s00894-020-04643-7   
2021 Salvi N, Bessa LM, Guseva S, Camacho-Zarco A, Maurin D, Perez LM, Malki A, Hengesbach M, Korn SM, Schlundt A, Schwalbe H, Blackledge M. H, C and N backbone chemical shift assignments of SARS-CoV-2 nsp3a. Biomolecular Nmr Assignments. PMID 33475934 DOI: 10.1007/s12104-020-10001-8   
2021 Ortega-Alarcon D, Claveria-Gimeno R, Vega S, Jorge-Torres OC, Esteller M, Abian O, Velazquez-Campoy A. Influence of the disordered domain structure of MeCP2 on its structural stability and dsDNA interaction. International Journal of Biological Macromolecules. 175: 58-66. PMID 33548325 DOI: 10.1016/j.ijbiomac.2021.01.206   
2021 Dietrich MH, Chan LJ, Adair A, Keremane S, Pymm P, Lo AW, Cao YC, Tham WH. Nanobody generation and structural characterization of Plasmodium falciparum 6-cysteine protein Pf12p. The Biochemical Journal. PMID 33480416 DOI: 10.1042/BCJ20200415   
2021 Kolodny R, Nepomnyachiy S, Tawfik DS, Ben-Tal N. Bridging themes: short protein segments found in different architectures. Molecular Biology and Evolution. PMID 33502503 DOI: 10.1093/molbev/msab017   
2021 Fry MY, Saladi SM, Clemons WM. The STI1-domain is a flexible alpha-helical fold with a hydrophobic groove. Protein Science : a Publication of the Protein Society. PMID 33620121 DOI: 10.1002/pro.4049   
2021 Dang TKL, Nguyen T, Habeck M, Gültas M, Waack S. A graph-based algorithm for detecting rigid domains in protein structures. Bmc Bioinformatics. 22: 66. PMID 33579190 DOI: 10.1186/s12859-021-03966-3   
2021 Huang Y, Jin F, Funato Y, Xu Z, Zhu W, Wang J, Sun M, Zhao Y, Yu Y, Miki H, Hattori M. Structural basis for the Mg recognition and regulation of the CorC Mg transporter. Science Advances. 7. PMID 33568487 DOI: 10.1126/sciadv.abe6140   
2021 Das A, Middleton AJ, Padala P, Ledgerwood EC, Mace PD, Day CL. The structure and ubiquitin binding properties of TRAF RING heterodimers. Journal of Molecular Biology. 166844. PMID 33539883 DOI: 10.1016/j.jmb.2021.166844   
2021 Magnussen HM, Huang DT. Identification of a catalytic active but non-aggregating MDM2 RING domain variant. Journal of Molecular Biology. 166807. PMID 33450248 DOI: 10.1016/j.jmb.2021.166807   
2021 Tőke O, Koprivanacz K, Radnai L, Merő B, Juhász T, Liliom K, Buday L. Solution NMR Structure of the SH3 Domain of Human Caskin1 Validates the Lack of a Typical Peptide Binding Groove and Supports a Role in Lipid Mediator Binding. Cells. 10. PMID 33467043 DOI: 10.3390/cells10010173   
2021 Sundaram R, Manohar K, Patel SK, Acharya N, Vasudevan D. Structural analyses of PCNA from the fungal pathogen Candida albicans identify three regions with species-specific conformations. Febs Letters. PMID 33544878 DOI: 10.1002/1873-3468.14055   
2021 Romero-Tamayo S, Laplaza R, Velazquez-Campoy A, Villanueva R, Medina M, Ferreira P. W196 and the -Hairpin Motif Modulate the Redox Switch of Conformation and the Biomolecular Interaction Network of the Apoptosis-Inducing Factor. Oxidative Medicine and Cellular Longevity. 2021: 6673661. PMID 33510840 DOI: 10.1155/2021/6673661   
2021 Mondal B, Nagesh J, Reddy G. Double Domain Swapping in Human γC and γD Crystallin Drives Early Stages of Aggregation. The Journal of Physical Chemistry. B. PMID 33566611 DOI: 10.1021/acs.jpcb.0c07833   
2021 Elgamoudi BA, Andrianova EP, Shewell LK, Day CJ, King RM, Taha, Rahman H, Hartley-Tassell LE, Zhulin IB, Korolik V. The chemoreceptor Tlp10 has a bimodal ligand-binding domain and specificity for multiple classes of chemoeffectors. Science Signaling. 14. PMID 33402336 DOI: 10.1126/scisignal.abc8521   
2021 Pastor M, Czapinska H, Helbrecht I, Krakowska K, Lutz T, Xu SY, Bochtler M. Crystal structures of the EVE-HNH endonuclease VcaM4I in the presence and absence of DNA. Nucleic Acids Research. PMID 33450012 DOI: 10.1093/nar/gkaa1218   
2021 Musselman CA, Kutateladze TG. Characterization of functional disordered regions within chromatin-associated proteins. Iscience. 24: 102070. PMID 33604523 DOI: 10.1016/j.isci.2021.102070   
2021 Gerak CAN, Cho SY, Kolesnikov M, Okon M, Murphy MEP, Sessions RB, Roberge M, McIntosh LP. Biophysical characterization of the ETV6 PNT domain polymerization interfaces. The Journal of Biological Chemistry. 100284. PMID 33450226 DOI: 10.1016/j.jbc.2021.100284   
2021 Takemata N, Bell SD. Multi-scale architecture of archaeal chromosomes. Molecular Cell. 81: 473-487.e6. PMID 33382983 DOI: 10.1016/j.molcel.2020.12.001   
2021 Mori T, Jung J, Kobayashi C, Dokainish HM, Re S, Sugita Y. Elucidation of Interactions Regulating Conformational Stability and Dynamics of SARS-CoV-2 S-Protein. Biophysical Journal. PMID 33484712 DOI: 10.1016/j.bpj.2021.01.012   
2021 Lin KF, Fry MY, Saladi SM, Clemons WM. Molecular basis of tail-anchored integral membrane protein recognition by the cochaperone Sgt2. The Journal of Biological Chemistry. 100441. PMID 33610544 DOI: 10.1016/j.jbc.2021.100441   
2021 Hubbard PA, Xia C, Shen AL, Kim JP. Structural and kinetic investigations of the carboxy terminus of NADPH cytochrome P450 oxidoreductase. Archives of Biochemistry and Biophysics. 108792. PMID 33556357 DOI: 10.1016/   
2021 Gupta D, Tiwari P, Haque MA, Sachdeva E, Hassan MI, Ethayathulla AS, Kaur P. Structural insights into the transient closed conformation and pH dependent ATPase activity of S.Typhi GyraseB N- terminal domain. Archives of Biochemistry and Biophysics. 108786. PMID 33548211 DOI: 10.1016/   
2021 Ryder BD, Matlahov I, Bali S, Vaquer-Alicea J, van der Wel PCA, Joachimiak LA. Regulatory inter-domain interactions influence Hsp70 recruitment to the DnaJB8 chaperone. Nature Communications. 12: 946. PMID 33574241 DOI: 10.1038/s41467-021-21147-x   
2021 Walls B, Mazilkin AA, Mukhamedov BO, Ionov A, Smirnova IA, Ponomareva AV, Fleischer K, Kozlovskaya NA, Shulyatev DA, Abrikosov IA, Shvets IV, Bozhko SI. Nanodomain structure of single crystalline nickel oxide. Scientific Reports. 11: 3496. PMID 33568704 DOI: 10.1038/s41598-021-82070-1   
2021 Ruiz L, Kaczmarska Z, Gomes T, Aragon E, Torner C, Freier R, Baginski B, Martin-Malpartida P, de Martin Garrido N, Marquez JA, Cordeiro TN, Pluta R, Macias MJ. Unveiling the dimer/monomer propensities of Smad MH1-DNA complexes. Computational and Structural Biotechnology Journal. 19: 632-646. PMID 33510867 DOI: 10.1016/j.csbj.2020.12.044   
2021 Sharma A, Kumari S, Goel M. Uncovering the structure-function aspects of an archaeal CsaA protein. Biochimica Et Biophysica Acta. Proteins and Proteomics. 140615. PMID 33561579 DOI: 10.1016/j.bbapap.2021.140615   
2021 Chaoprasid P, Lukat P, Mühlen S, Heidler T, Gazdag EM, Dong S, Bi W, Rüter C, Kirchenwitz M, Steffen A, Jänsch L, Stradal TEB, Dersch P, Blankenfeldt W. Crystal structure of bacterial cytotoxic necrotizing factor CNF reveals molecular building blocks for intoxication. The Embo Journal. e105202. PMID 33410511 DOI: 10.15252/embj.2020105202   
2021 Feng W, Nguyen H, Shen D, Deng H, Jiang Z, Podolnikova N, Ugarova T, Wang X. Structural Characterization of the Interaction between the αI-Domain of the Integrin Mac-1 (αβ) and the Cytokine Pleiotrophin. Biochemistry. PMID 33427449 DOI: 10.1021/acs.biochem.0c00700   
2021 Gianni S, Freiberger MI, Jemth P, Ferreiro DU, Wolynes PG, Fuxreiter M. Fuzziness and Frustration in the Energy Landscape of Protein Folding, Function, and Assembly. Accounts of Chemical Research. PMID 33550810 DOI: 10.1021/acs.accounts.0c00813   
2021 Wang X, Ma Q. Wzb of Vibrio vulnificus represents a new group of low molecular weight protein tyrosine phosphatases with a unique insertion in the W-loop. The Journal of Biological Chemistry. 100280. PMID 33450227 DOI: 10.1016/j.jbc.2021.100280   
2021 Hu S, Chen X, Zhu M, Hu H, Zhou C, Shi L, Zhang N. Expression, purification and characterization of the second DUSP domain of deubiquitinase USP20/VDU2. Protein Expression and Purification. 105836. PMID 33529762 DOI: 10.1016/j.pep.2021.105836   
2021 Xu Z, Zhou Y, Liu M, Ma H, Sun L, Zahid A, Chen Y, Zhou R, Cao M, Wu D, Zhao W, Li B, Jin T. Homotypic CARD-CARD interaction is critical for the activation of NLRP1 inflammasome. Cell Death & Disease. 12: 57. PMID 33431827 DOI: 10.1038/s41419-020-03342-8   
2021 Tran TH, Chan AH, Young LC, Bindu L, Neale C, Messing S, Dharmaiah S, Taylor T, Denson JP, Esposito D, Nissley DV, Stephen AG, McCormick F, Simanshu DK. KRAS interaction with RAF1 RAS-binding domain and cysteine-rich domain provides insights into RAS-mediated RAF activation. Nature Communications. 12: 1176. PMID 33608534 DOI: 10.1038/s41467-021-21422-x   
2021 Bedford JT, Poutsma J, Diawara N, Greene LH. The nature of persistent interactions in two model β-grasp proteins reveals the advantage of symmetry in stability. Journal of Computational Chemistry. PMID 33534913 DOI: 10.1002/jcc.26477   
2021 Schmit JD, Feric M, Dundr M. How Hierarchical Interactions Make Membraneless Organelles Tick Like Clockwork. Trends in Biochemical Sciences. PMID 33483232 DOI: 10.1016/j.tibs.2020.12.011   
2021 Yanaka S, Yamaguchi Y, Takizawa T, Miyanoiri Y, Yogo R, Shimada I, Kato K. NMR assignments of the N-glycans of the Fc fragment of mouse immunoglobulin G2b glycoprotein. Biomolecular Nmr Assignments. PMID 33423189 DOI: 10.1007/s12104-020-10004-5   
2021 Deng Z, Yuan B, Yang K. Cardiolipin Selectively Binds to the Interface of SemiSWEET and Regulates Its Dimerization. The Journal of Physical Chemistry Letters. 1940-1946. PMID 33591759 DOI: 10.1021/acs.jpclett.1c00022   
2021 Xu X, Zhang D, Zhou B, Zhen X, Ouyang S. Structural and biochemical analyses of the tetrameric cell binding domain of Lys170 from enterococcal phage F170/08. European Biophysics Journal : Ebj. PMID 33609147 DOI: 10.1007/s00249-021-01511-x   
2021 Yang H, Yu Z, Chen X, Li J, Li N, Cheng J, Gao N, Yuan HX, Ye D, Guan KL, Xu Y. Structural insights into TSC complex assembly and GAP activity on Rheb. Nature Communications. 12: 339. PMID 33436626 DOI: 10.1038/s41467-020-20522-4   
2021 Mohd-Kipli F, Claridge JK, Habjanič J, Jiang A, Schnell JR. Conformational triggers associated with influenza matrix protein 1 polymerization. The Journal of Biological Chemistry. 100316. PMID 33516724 DOI: 10.1016/j.jbc.2021.100316   
2021 Horikoshi N, Hwang S, Gati C, Matsui T, Castillo-Orellana C, Raub AG, Garcia AA, Jabbarpour F, Batyuk A, Broweleit J, Xiang X, Chiang A, Broweleit R, Vöhringer-Martinez E, Mochly-Rosen D, et al. Long-range structural defects by pathogenic mutations in most severe glucose-6-phosphate dehydrogenase deficiency. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33468660 DOI: 10.1073/pnas.2022790118   
2021 Ried MK, Wild R, Zhu J, Pipercevic J, Sturm K, Broger L, Harmel RK, Abriata LA, Hothorn LA, Fiedler D, Hiller S, Hothorn M. Inositol pyrophosphates promote the interaction of SPX domains with the coiled-coil motif of PHR transcription factors to regulate plant phosphate homeostasis. Nature Communications. 12: 384. PMID 33452263 DOI: 10.1038/s41467-020-20681-4   
2021 Valles GJ, Ashton NW, Jaiswal N, Woodgate R, Bezsonova I. Nuclear magnetic resonance spectral data of the USP7 TRAF and UBL1-2 domains in complex with DNA polymerase ι peptides. Data in Brief. 34: 106680. PMID 33437851 DOI: 10.1016/j.dib.2020.106680   
2021 Biebl MM, Lopez A, Rehn A, Freiburger L, Lawatscheck J, Blank B, Sattler M, Buchner J. Structural elements in the flexible tail of the co-chaperone p23 coordinate client binding and progression of the Hsp90 chaperone cycle. Nature Communications. 12: 828. PMID 33547294 DOI: 10.1038/s41467-021-21063-0   
2021 Lin MH, Cho CC, Chiu YC, Chien CY, Huang YP, Chang CF, Hsu CH. Elucidating the tunability of binding behavior for the MERS-CoV macro domain with NAD metabolites. Communications Biology. 4: 123. PMID 33504944 DOI: 10.1038/s42003-020-01633-6   
2021 Zhou X, Lin Y, Kato M, Mori E, Liszczak G, Sutherland L, Sysoev VO, Murray DT, Tycko R, McKnight SL. Transiently structured head domains control intermediate filament assembly. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33593918 DOI: 10.1073/pnas.2022121118   
2021 Fan X, Jiang J, Zhao D, Chen F, Ma H, Smith P, Unterholzner L, Xiao TS, Jin T. Structural mechanism of DNA recognition by the p204 HIN domain. Nucleic Acids Research. PMID 33619523 DOI: 10.1093/nar/gkab076