Sanchita Bhadra, Ph.D. - Related publications

Affiliations: 
2005 University of Texas at Austin, Austin, Texas, U.S.A. 
Area:
Microbiology Biology
NOTE: We are testing a new system for identifying relevant work based on semantic analysis that identifies similarities between recently published papers and the current author's publications. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches.
50 most relevant papers in past 60 days:
Year Citation  Score
2021 Chérif N, Zouari M, Amdouni F, Mefteh M, Ksouri A, Bouhaouala-Zahar B, Raouafi N. Direct Amperometric Sensing of Fish Nodavirus RNA Using Gold Nanoparticle/DNA-Based Bioconjugates. Pathogens (Basel, Switzerland). 10. PMID 34451396 DOI: 10.3390/pathogens10080932   
2021 Sun L, McNulty SN, Evenson MJ, Zhu X, Robinson J, Mann PR, Duncavage EJ, Pfeifer JD. Clinical Implications of a Targeted RNA-Sequencing Panel in the Detection of Gene Fusions in Solid Tumors. The Journal of Molecular Diagnostics : Jmd. PMID 34562614 DOI: 10.1016/j.jmoldx.2021.08.009   
2021 Tian T, Qiu Z, Jiang Y, Zhu D, Zhou X. Exploiting the orthogonal CRISPR-Cas12a/Cas13a trans-cleavage for dual-gene virus detection using a handheld device. Biosensors & Bioelectronics. 196: 113701. PMID 34653714 DOI: 10.1016/j.bios.2021.113701   
2021 Zhan X, Deng L, Chen G. Mechanisms and applications of peptide nucleic acids selectively binding to double-stranded RNA. Biopolymers. e23476. PMID 34581432 DOI: 10.1002/bip.23476   
2021 Zayani R, Rezig D, Fares W, Marrakchi M, Essafi M, Raouafi N. Multiplexed Magnetofluorescent Bioplatform for the Sensitive Detection of SARS-CoV-2 Viral RNA without Nucleic Acid Amplification. Analytical Chemistry. 93: 11225-11232. PMID 34338520 DOI: 10.1021/acs.analchem.1c01950   
2021 Fang Y, Changavi A, Yang M, Sun L, Zhang A, Sun D, Sun Z, Zhang B, Xu MQ. Nanopore Whole Transcriptome Analysis and Pathogen Surveillance by a Novel Solid-Phase Catalysis Approach. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). e2103373. PMID 34837482 DOI: 10.1002/advs.202103373   
2021 Xiao L, Jun YW, Kool ET. DNA tiling enables precise acylation-based labeling and control of mRNA. Angewandte Chemie (International Ed. in English). PMID 34624169 DOI: 10.1002/anie.202112106   
2021 Erster O, Mendelson E, Levy V, Kabat A, Mannasse B, Asraf H, Azar R, Ali Y, Shirazi R, Bucris E, Bar-Ilan D, Mor O, Mandelboim M, Sofer D, Fleishon S, et al. Rapid and High-Throughput Reverse Transcriptase Quantitative PCR (RT-qPCR) Assay for Identification and Differentiation between SARS-CoV-2 Variants B.1.1.7 and B.1.351. Microbiology Spectrum. e0050621. PMID 34612692 DOI: 10.1128/Spectrum.00506-21   
2021 Ju Y, Kim J, Park Y, Lee CY, Kim K, Hong KH, Lee H, Yong D, Park HG. Rapid and accurate clinical testing for COVID-19 by nicking and extension chain reaction system-based amplification (NESBA). Biosensors & Bioelectronics. 196: 113689. PMID 34688112 DOI: 10.1016/j.bios.2021.113689   
2021 Dignan LM, Turiello R, Layne TR, O'Connell KC, Hickey J, Chapman J, Poulter MD, Landers JP. An ultrafast SARS-CoV-2 virus enrichment and extraction method compatible with multiple modalities for RNA detection. Analytica Chimica Acta. 1180: 338846. PMID 34538333 DOI: 10.1016/j.aca.2021.338846   
2021 Xiao S, Guo S, Han J, Sun Y, Wang M, Chen Y, Fang X, Yang F, Mu Y, Zhang L, Ding Y, Zhang N, Jiang H, Chen K, Zhao K, et al. High-Throughput-Methyl-Reading (HTMR) assay: a solution based on nucleotide methyl-binding proteins enables large-scale screening for DNA/RNA methyltransferases and demethylases. Nucleic Acids Research. PMID 34718755 DOI: 10.1093/nar/gkab989   
2021 Harrington C, Sun H, Jeffries-Miles S, Gerloff N, Mandelbaum M, Pang H, Collins N, Burns CC, Vega E. Culture-Independent Detection of Poliovirus in Stool Samples by Direct RNA Extraction. Microbiology Spectrum. e0066821. PMID 34756088 DOI: 10.1128/Spectrum.00668-21   
2021 Park HJ, Jung C, Yoo TH. Development of one-step isothermal methods to detect RNAs using hairpin-loop signal converters and proximity proteolysis reaction. Biosensors & Bioelectronics. 197: 113769. PMID 34773751 DOI: 10.1016/j.bios.2021.113769   
2021 Golyshev VM, Pyshnyi DV, Lomzov AA. [Calculation of Energy for RNA/RNA and DNA/RNA Duplex Formation by Molecular Dynamics Simulation]. Molekuliarnaia Biologiia. 55: 1030-1044. PMID 34837707 DOI: 10.31857/S0026898421060069   
2021 Zhao EM, Mao AS, de Puig H, Zhang K, Tippens ND, Tan X, Ran FA, Han I, Nguyen PQ, Chory EJ, Hua TY, Ramesh P, Thompson DB, Oh CY, Zigon ES, et al. RNA-responsive elements for eukaryotic translational control. Nature Biotechnology. PMID 34711989 DOI: 10.1038/s41587-021-01068-2   
2021 Heo T, Kang H, Choi S, Kim J. Detection of Island mRNAs Using Toehold Sensors in . Life (Basel, Switzerland). 11. PMID 34833155 DOI: 10.3390/life11111280   
2021 Ghimire S, Stewart CG, Thurman AL, Pezzulo AA. Performance of a scalable RNA extraction-free transcriptome profiling method for adherent cultured human cells. Scientific Reports. 11: 19438. PMID 34593905 DOI: 10.1038/s41598-021-98912-x   
2021 Villota SD, Nipaz VE, Carrazco-Montalvo A, Hernandez S, Waggoner JJ, Ponce P, Coloma J, Orlando A, Cevallos V. Alternative RNA extraction-free techniques for the real-time RT-PCR detection of SARS-CoV-2 in nasopharyngeal swab and sputum samples. Journal of Virological Methods. 298: 114302. PMID 34563582 DOI: 10.1016/j.jviromet.2021.114302   
2021 Sato Y, Shahi S, Telengech P, Hisano S, Cornejo C, Rigling D, Kondo H, Suzuki N. A new tetra-segmented splipalmivirus with divided RdRP domains from Cryphonectria naterciae, a fungus found on chestnut and cork oak trees in Europe: New splipalmivirus from Cryphonectria naterciae. Virus Research. 198606. PMID 34688782 DOI: 10.1016/j.virusres.2021.198606   
2021 Su L, Chen F, Yu H, Yan H, Zhao F, Fan C, Zhao Y. Addition-Elimination Mechanism-Activated Nucleotide Transition Sequencing for RNA Dynamics Profiling. Analytical Chemistry. PMID 34612623 DOI: 10.1021/acs.analchem.1c03361   
2021 Johnson KA, Dangerfield T. Mechanisms of inhibition of viral RNA replication by nucleotide analogs. The Enzymes. 49: 39-62. PMID 34696838 DOI: 10.1016/bs.enz.2021.07.001   
2021 Feng JY, Ray AS. HCV RdRp, sofosbuvir and beyond. The Enzymes. 49: 63-82. PMID 34696839 DOI: 10.1016/bs.enz.2021.06.003   
2021 Bai X, Li F, Zhang Z. A hypothetical model of trans-acting R-loops-mediated promoter-enhancer interactions by Alu elements. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 34531149 DOI: 10.1016/j.jgg.2021.07.005   
2021 Gokulan CG, Kiran U, Kuncha SK, Mishra RK. Temporal stability and detection sensitivity of the dry swab-based diagnosis of SARS-CoV-2. Journal of Biosciences. 46. PMID 34728592   
2021 Lai MY, Bukhari FDM, Zulkefli NZ, Ismail I, Mustapa NI, Soh TST, Hassan AH, Peariasamy KM, Lee YL, Suppiah J, Thayan R, Lau YL. Two extraction-free reverse transcription loop-mediated isothermal amplification assays for detection of SARS-CoV-2. Bmc Infectious Diseases. 21: 1162. PMID 34789179 DOI: 10.1186/s12879-021-06876-0   
2021 Endo M, Kim JI, Shioi NA, Iwai S, Kuraoka I. endonuclease V is a ribonuclease specific for inosine-containing single-stranded RNA. Open Biology. 11: 210148. PMID 34665969 DOI: 10.1098/rsob.210148   
2021 Govindkumar B, Kavyashree B, Patel K, Sasidharan K, T SA, Thomas L, Bkg P, Hn R, R M, Acharya KK. Ex-Ex Primer: an experimentally validated tool for designing oligonucleotides spanning spliced nucleic acid regions from multiple species. Journal of Biotechnology. PMID 34756973 DOI: 10.1016/j.jbiotec.2021.10.009   
2021 De Souza Lima D, Amichi LJA, Constantino AA, Fernandez MA, Seixas FAV. NCYPred: A Bidirectional LSTM Network with Attention for Y RNA and short non-coding RNA classification. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 34826297 DOI: 10.1109/TCBB.2021.3131136   
2021 Domingo E, García-Crespo C, Lobo-Vega R, Perales C. Mutation Rates, Mutation Frequencies, and Proofreading-Repair Activities in RNA Virus Genetics. Viruses. 13. PMID 34578463 DOI: 10.3390/v13091882   
2021 Mulroney L, Wulf M, Schildkraut I, Tzertzinis G, Buswell J, Jain M, Olsen HE, Diekhans M, Corrêa IR, Akeson M, Ettwiller L. Identification of high confidence human poly(A) RNA isoform scaffolds using nanopore sequencing. Rna (New York, N.Y.). PMID 34728536 DOI: 10.1261/rna.078703.121   
2021 Mulroney L, Wulf M, Schildkraut I, Tzertzinis G, Buswell J, Jain M, Olsen HE, Diekhans M, Corrêa IR, Akeson M, Ettwiller L. Identification of high confidence human poly(A) RNA isoform scaffolds using nanopore sequencing. Rna (New York, N.Y.). PMID 34728536 DOI: 10.1261/rna.078703.121   
2021 Natarajan A, Han A, Zlitni S, Brooks EF, Vance SE, Wolfe M, Singh U, Jagannathan P, Pinsky BA, Boehm A, Bhatt AS. Standardized preservation, extraction and quantification techniques for detection of fecal SARS-CoV-2 RNA. Nature Communications. 12: 5753. PMID 34599164 DOI: 10.1038/s41467-021-25576-6   
2021 Biswal JK, Ranjan R, Dahiya SS, Mallick S, Mohapatra JK. Regenerated silica-based RNA purification columns to address the short supply of RNA purification kits for COVID-19 diagnosis. Molecular Biology Reports. 48: 6871-6877. PMID 34510319 DOI: 10.1007/s11033-021-06688-0   
2021 Zhao N, Cao J, Xu J, Liu B, Liu B, Chen D, Xia B, Chen L, Zhang W, Zhang Y, Zhang X, Duan Z, Wang K, Xie F, Xiao K, et al. Targeting RNA with Next- and Third-Generation Sequencing Improves Pathogen Identification in Clinical Samples. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). e2102593. PMID 34687159 DOI: 10.1002/advs.202102593   
2021 Malone B, Campbell EA, Darst SA. CoV-er all the bases: Structural perspectives of SARS-CoV-2 RNA synthesis. The Enzymes. 49: 1-37. PMID 34696829 DOI: 10.1016/bs.enz.2021.06.004   
2021 Verma DK, Sood N, Paria A, Swaminathan TR, Mohan CV, Rajendran KV, Pradhan PK. Reassortment and evolutionary dynamics of tilapia lake virus genomic segments. Virus Research. 198625. PMID 34780882 DOI: 10.1016/j.virusres.2021.198625   
2021 Kluesner MG, Tasakis RN, Lerner T, Arnold A, Wüst S, Binder M, Webber BR, Moriarity BS, Pecori R. MultiEditR: The first tool for the detection and quantification of RNA editing from Sanger sequencing demonstrates comparable fidelity to RNA-seq. Molecular Therapy. Nucleic Acids. 25: 515-523. PMID 34589274 DOI: 10.1016/j.omtn.2021.07.008   
2021 Tripathy S, Supraja P, Mohanty S, Sai VM, Agrawal T, Chowdary CG, Taranikanti M, Bandaru R, Mudunuru AK, Tadi LJ, Suravaram S, Siddiqui IA, Maddur S, Guntuka RK, Singh R, et al. Artificial Intelligence-Based Portable Bioelectronics Platform for SARS-CoV-2 Diagnosis with Multi-nucleotide Probe Assay for Clinical Decisions. Analytical Chemistry. PMID 34694783 DOI: 10.1021/acs.analchem.1c01650   
2021 Lee S, Kim H, Kim HY, Park HG. Target-induced transcription of a light-up RNA aptamer to construct a novel method for alkaline phosphatase assay. Chemical Communications (Cambridge, England). PMID 34735558 DOI: 10.1039/d1cc04787f   
2021 Dumetz F, Chow EY, Harris LM, Liew SW, Jensen A, Umar MI, Chung B, Chan TF, Merrick CJ, Kwok CK. G-quadruplex RNA motifs influence gene expression in the malaria parasite Plasmodium falciparum. Nucleic Acids Research. PMID 34792144 DOI: 10.1093/nar/gkab1095   
2021 Quinodoz SA, Jachowicz JW, Bhat P, Ollikainen N, Banerjee AK, Goronzy IN, Blanco MR, Chovanec P, Chow A, Markaki Y, Thai J, Plath K, Guttman M. RNA promotes the formation of spatial compartments in the nucleus. Cell. 184: 5775-5790.e30. PMID 34739832 DOI: 10.1016/j.cell.2021.10.014   
2021 Israeli O, Cohen-Gihon I, Aftalion M, Gur D, Vagima Y, Zauberman A, Levy Y, Zvi A, Chitlaru T, Mamroud E, Tidhar A. Novel RNA Extraction Method for Dual RNA-seq Analysis of Pathogen and Host in the Early Stages of Pulmonary Infection. Microorganisms. 9. PMID 34683487 DOI: 10.3390/microorganisms9102166   
2021 Tutino VM, Fricano S, Frauens K, Patel TR, Monteiro A, Rai HH, Waqas M, Chaves L, Poppenberg KE, Siddiqui AH. Isolation of RNA from Acute Ischemic Stroke Clots Retrieved by Mechanical Thrombectomy. Genes. 12. PMID 34681010 DOI: 10.3390/genes12101617   
2021 Pérez-Cañamás M, Hevia E, Katsarou K, Hernández C. Genetic evidence for the involvement of Dicer-like 2 and 4 as well as Argonaute 2 in the response against . The Journal of General Virology. 102. PMID 34623234 DOI: 10.1099/jgv.0.001656   
2021 Yu CH, Kabza AM, Sczepanski JT. Assembly of long L-RNA by native RNA ligation. Chemical Communications (Cambridge, England). PMID 34550128 DOI: 10.1039/d1cc04296c   
2021 He M, Wu X, Mao S, Haruehanroengra P, Khan I, Sheng J, Royzen M. Non-Chromatographic Purification of Synthetic RNA Using Bio-Orthogonal Chemistry. Current Protocols. 1: e247. PMID 34570433 DOI: 10.1002/cpz1.247   
2021 Ingram ZM, Schneider DA, Lucius AL. Transient-state kinetic analysis of multi-nucleotide addition catalyzed by RNA polymerase I. Biophysical Journal. 120: 4378-4390. PMID 34509510 DOI: 10.1016/j.bpj.2021.09.008   
2021 Wang X, Hu C, Ye W, Wang J, Dong X, Xu J, Li X, Zhang M, Lu H, Zhang F, Wu W, Dai S, Wang HW, Chen Z. Structure of Rift Valley fever virus RNA-dependent RNA polymerase. Journal of Virology. JVI0171321. PMID 34787453 DOI: 10.1128/JVI.01713-21   
2021 Ujibe K, Nishimura K, Kashima M, Hirata H. Direct-TRI: High-throughput RNA-extracting Method for All Stages of Zebrafish Development. Bio-Protocol. 11: e4136. PMID 34604443 DOI: 10.21769/BioProtoc.4136   
2021 Lambert M, Benmoussa A, Diallo I, Ouellet-Boutin K, Dorval V, Majeau N, Joly-Beauparlant C, Droit A, Bergeron A, Têtu B, Fradet Y, Pouliot F, Provost P. Identification of Abundant and Functional dodecaRNAs (doRNAs) Derived from Ribosomal RNA. International Journal of Molecular Sciences. 22. PMID 34575920 DOI: 10.3390/ijms22189757