Brook L. Nunn, Ph.D. - Publications

2004 Department of Genome Sciences University of Washington, Seattle, Seattle, WA 
Oceanography, Biology, Biogeochemistry, Chemistry, Genomics

37 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Timmins-Schiffman E, White SJ, Thompson RE, Vadopalas B, Eudeline B, Nunn BL, Roberts SB. Coupled microbiome analyses highlights relative functional roles of bacteria in a bivalve hatchery. Environmental Microbiome. 16: 7. PMID 33902744 DOI: 10.1186/s40793-021-00376-z  1
2021 Mudge MC, Nunn BL, Firth E, Ewert M, Hales K, Fondrie WE, Noble WS, Toner J, Light B, Junge KA. Subzero, saline incubations of Colwellia psychrerythraea reveal strategies and biomarkers for sustained life in extreme icy environments. Environmental Microbiology. PMID 33760340 DOI: 10.1111/1462-2920.15485  1
2021 Tisthammer KH, Timmins-Schiffman E, Seneca FO, Nunn BL, Richmond RH. Physiological and molecular responses of lobe coral indicate nearshore adaptations to anthropogenic stressors. Scientific Reports. 11: 3423. PMID 33564085 DOI: 10.1038/s41598-021-82569-7  1
2020 Sajulga R, Easterly C, Riffle M, Mesuere B, Muth T, Mehta S, Kumar P, Johnson J, Gruening BA, Schiebenhoefer H, Kolmeder CA, Fuchs S, Nunn BL, Rudney J, Griffin TJ, et al. Survey of metaproteomics software tools for functional microbiome analysis. Plos One. 15: e0241503. PMID 33170893 DOI: 10.1371/journal.pone.0241503  1
2019 Krayushkina D, Timmins-Schiffman E, Faux J, May DH, Riffle M, Harvey HR, Nunn BL. Growth phase proteomics of the heterotrophic marine bacterium Ruegeria pomeroyi. Scientific Data. 6: 303. PMID 31796751 DOI: 10.1038/S41597-019-0308-Y  1
2019 Mikan MP, Harvey HR, Timmins-Schiffman E, Riffle M, May DH, Salter I, Noble WS, Nunn BL. Metaproteomics reveal that rapid perturbations in organic matter prioritize functional restructuring over taxonomy in western Arctic Ocean microbiomes. The Isme Journal. PMID 31492961 DOI: 10.1038/S41396-019-0503-Z  1
2019 Spencer LH, Horwith M, Lowe AT, Venkataraman YR, Timmins-Schiffman E, Nunn BL, Roberts SB. Pacific geoduck (Panopea generosa) resilience to natural pH variation. Comparative Biochemistry and Physiology. Part D, Genomics & Proteomics. 30: 91-101. PMID 30818101 DOI: 10.1016/J.Cbd.2019.01.010  1
2018 Timmins-Schiffman E, Mikan MP, Ting YS, Harvey HR, Nunn BL. MS analysis of a dilution series of bacteria:phytoplankton to improve detection of low abundance bacterial peptides. Scientific Reports. 8: 9276. PMID 29915279 DOI: 10.1038/S41598-018-27650-4  1
2017 Riffle M, May DH, Timmins-Schiffman E, Mikan MP, Jaschob D, Noble WS, Nunn BL. MetaGOmics: A Web-Based Tool for Peptide-Centric Functional and Taxonomic Analysis of Metaproteomics Data. Proteomes. 6. PMID 29280960 DOI: 10.3390/Proteomes6010002  1
2017 Smith MC, Timmins-Schiffman E, Coton M, Coton E, Hymery N, Nunn BL, Madec S. Differential impacts of individual and combined exposures of deoxynivalenol and zearalenone on the HepaRG human hepatic cell proteome. Journal of Proteomics. 173: 89-98. PMID 29208510 DOI: 10.1016/J.Jprot.2017.11.025  1
2017 Timmins-Schiffman EB, Crandall GA, Vadopalas B, Riffle ME, Nunn BL, Roberts S. Integrating discovery-driven proteomics and selected reaction monitoring to develop a non-invasive assay for geoduck reproductive maturation. Journal of Proteome Research. PMID 28730805 DOI: 10.1021/Acs.Jproteome.7B00288  0.36
2016 Timmins-Schiffman E, May DH, Mikan M, Riffle M, Frazar C, Harvey HR, Noble WS, Nunn BL. Critical decisions in metaproteomics: achieving high confidence protein annotations in a sea of unknowns. The Isme Journal. PMID 27824341 DOI: 10.1038/Ismej.2016.132  1
2016 May DH, Timmins-Schiffman E, Mikan MP, Harvey HR, Borenstein E, Nunn BL, Noble WS. An alignment-free 'metapeptide' strategy for metaproteomic characterization of microbiome samples using shotgun metagenomic sequencing. Journal of Proteome Research. PMID 27396978 DOI: 10.1021/Acs.Jproteome.6B00239  1
2016 Boyd PW, Dillingham PW, Mcgraw CM, Armstrong EA, Cornwall CE, Feng YY, Hurd CL, Gault-Ringold M, Roleda MY, Timmins-Schiffman E, Nunn BL. Physiological responses of a Southern Ocean diatom to complex future ocean conditions Nature Climate Change. 6: 207-213. DOI: 10.1038/Nclimate2811  1
2015 Bridoux MC, Neibauer J, Ingalls AE, Nunn BL, Keil RG. Suspended marine particulate proteins in coastal and oligotrophic waters Journal of Marine Systems. 143: 39-48. DOI: 10.1016/J.Jmarsys.2014.10.014  1
2014 Nunn BL, Slattery KV, Cameron KA, Timmins-Schiffman E, Junge K. Proteomics of Colwellia psychrerythraea at subzero temperatures - a life with limited movement, flexible membranes and vital DNA repair. Environmental Microbiology. PMID 25471130 DOI: 10.1111/1462-2920.12691  1
2014 Timmins-Schiffman E, Coffey WD, Hua W, Nunn BL, Dickinson GH, Roberts SB. Shotgun proteomics reveals physiological response to ocean acidification in Crassostrea gigas. Bmc Genomics. 15: 951. PMID 25362893 DOI: 10.1186/1471-2164-15-951  1
2014 Poulson-Ellestad KL, Jones CM, Roy J, Viant MR, Fernández FM, Kubanek J, Nunn BL. Metabolomics and proteomics reveal impacts of chemically mediated competition on marine plankton. Proceedings of the National Academy of Sciences of the United States of America. 111: 9009-14. PMID 24889616 DOI: 10.1073/Pnas.1402130111  1
2014 Moore EK, Harvey HR, Faux JF, Goodlett DR, Nunn BL. Protein recycling in Bering Sea algal incubations Marine Ecology Progress Series. 515: 45-59. DOI: 10.3354/Meps10936  1
2014 Poulson-Ellestad KL, Jones CM, Roy J, Viant MR, Fernández FM, Kubanek J, Nunn BL. Metabolomics and proteomics reveal impacts of chemically mediated competition on marine plankton (Proceedings of the National Academy of Sciences of the United States of America (2014) 111, 24 (9000-9014) DOI: 10.1073/pnas.1402130111) Proceedings of the National Academy of Sciences of the United States of America. 111: 12568. DOI: 10.1073/pnas.1413432111  1
2013 Timmins-Schiffman E, Nunn BL, Goodlett DR, Roberts SB. Shotgun proteomics as a viable approach for biological discovery in the Pacific oyster. Conservation Physiology. 1: cot009. PMID 27293593 DOI: 10.1093/Conphys/Cot009  1
2013 Nunn BL, Faux JF, Hippmann AA, Maldonado MT, Harvey HR, Goodlett DR, Boyd PW, Strzepek RF. Diatom proteomics reveals unique acclimation strategies to mitigate Fe limitation. Plos One. 8: e75653. PMID 24146769 DOI: 10.1371/Journal.Pone.0075653  1
2013 Morris RM, Nunn BL. Sample preparation and processing for planktonic microbial community proteomics. Methods in Enzymology. 531: 271-87. PMID 24060126 DOI: 10.1016/B978-0-12-407863-5.00014-9  1
2013 Mattes TE, Nunn BL, Marshall KT, Proskurowski G, Kelley DS, Kawka OE, Goodlett DR, Hansell DA, Morris RM. Sulfur oxidizers dominate carbon fixation at a biogeochemical hot spot in the dark ocean. The Isme Journal. 7: 2349-60. PMID 23842654 DOI: 10.1038/Ismej.2013.113  1
2012 Moore EK, Nunn BL, Goodlett DR, Harvey HR. Identifying and tracking proteins through the marine water column: insights into the inputs and preservation mechanisms of protein in sediments. Geochimica Et Cosmochimica Acta. 83: 324-359. PMID 22711915 DOI: 10.1016/J.Gca.2012.01.002  1
2011 Velasquez I, Nunn BL, Ibisanmi E, Goodlett DR, Hunter KA, Sander SG. Detection of hydroxamate siderophores in coastal and Sub-Antarctic waters off the South Eastern Coast of New Zealand Marine Chemistry. 126: 97-107. DOI: 10.1016/J.Marchem.2011.04.003  1
2010 McMillan DG, Velasquez I, Nunn BL, Goodlett DR, Hunter KA, Lamont I, Sander SG, Cook GM. Acquisition of iron by alkaliphilic bacillus species. Applied and Environmental Microbiology. 76: 6955-61. PMID 20802068 DOI: 10.1128/Aem.01393-10  1
2010 Morris RM, Nunn BL, Frazar C, Goodlett DR, Ting YS, Rocap G. Comparative metaproteomics reveals ocean-scale shifts in microbial nutrient utilization and energy transduction. The Isme Journal. 4: 673-85. PMID 20164862 DOI: 10.1038/Ismej.2010.4  1
2010 Nunn BL, Ting YS, Malmström L, Tsai YS, Squier A, Goodlett DR, Harvey HR. The path to preservation: Using proteomics to decipher the fate of diatom proteins during microbial degradation Limnology and Oceanography. 55: 1790-1804. DOI: 10.4319/Lo.2010.55.4.1790  1
2009 Nunn BL, Aker JR, Shaffer SA, Tsai S, Strzepek RF, Boyd PW, Freeman TL, Brittnacher M, Malmström L, Goodlett DR. Deciphering diatom biochemical pathways via whole-cell proteomics. Aquatic Microbial Ecology : International Journal. 55: 241-253. PMID 19829762 DOI: 10.3354/Ame01284  1
2009 Hengel SM, Shaffer SA, Nunn BL, Goodlett DR. Tandem mass spectrometry investigation of ADP-ribosylated kemptide. Journal of the American Society For Mass Spectrometry. 20: 477-83. PMID 19070509 DOI: 10.1016/J.Jasms.2008.10.025  1
2007 Nunn BL, Timperman AT. Marine proteomics Marine Ecology Progress Series. 332: 281-289. DOI: 10.3354/meps332281  1
2006 Nunn BL, Shaffer SA, Scherl A, Gallis B, Wu M, Miller SI, Goodlett DR. Comparison of a Salmonella typhimurium proteome defined by shotgun proteomics directly on an LTQ-FT and by proteome pre-fractionation on an LCQ-DUO. Briefings in Functional Genomics & Proteomics. 5: 154-68. PMID 16798750 DOI: 10.1093/Bfgp/Ell024  1
2006 Nunn BL, Keil RG. A comparison of non-hydrolytic methods for extracting amino acids and proteins from coastal marine sediments Marine Chemistry. 98: 31-42. DOI: 10.1016/J.Marchem.2005.06.005  1
2005 Nunn BL, Keil RG. Size distribution and amino acid chemistry of base-extractable proteins from Washington coast sediments Biogeochemistry. 75: 177-200. DOI: 10.1007/S10533-004-6546-9  1
2004 Keil RG, Dickens AF, Arnarson T, Nunn BL, Devol AH. What is the oxygen exposure time of laterally transported organic matter along the Washington margin? Marine Chemistry. 92: 157-165. DOI: 10.1016/J.Marchem.2004.06.024  1
2003 Nunn BL, Norbeck A, Keil RG. Hydrolysis patterns and the production of peptide intermediates during protein degradation in marine systems Marine Chemistry. 83: 59-73. DOI: 10.1016/S0304-4203(03)00096-3  1
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