Bongkeun Song, Ph.D. - Publications

Affiliations: 
2000 Rutgers University, New Brunswick, New Brunswick, NJ, United States 
Area:
Microbiology Biology, Environmental Engineering, Molecular Biology, Environmental Sciences

64 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Wilson SJ, Song B, Anderson IC. Geochemical factors impacting nitrifying communities in sandy sediments. Environmental Microbiology. PMID 37715648 DOI: 10.1111/1462-2920.16504  0.466
2022 Semedo M, Song B. Sediment metagenomics reveals the impacts of poultry industry wastewater on antibiotic resistance and nitrogen cycling genes in tidal creek ecosystems. The Science of the Total Environment. 857: 159496. PMID 36257428 DOI: 10.1016/j.scitotenv.2022.159496  0.374
2021 Fortin SG, Song B, Anderson IC. Microbially mediated nitrogen removal and retention in the york river estuary. Fems Microbiology Ecology. PMID 34410371 DOI: 10.1093/femsec/fiab118  0.431
2021 Wu J, Hong Y, Wilson SJ, Song B. Microbial nitrogen loss by coupled nitrification to denitrification and anammox in a permeable subterranean estuary at Gloucester Point, Virginia. Marine Pollution Bulletin. 168: 112440. PMID 33971455 DOI: 10.1016/j.marpolbul.2021.112440  0.382
2020 Giannopoulos G, Hartop KR, Brown BL, Song B, Elsgaard L, Franklin RB. Trace Metal Availability Affects Greenhouse Gas Emissions and Microbial Functional Group Abundance in Freshwater Wetland Sediments. Frontiers in Microbiology. 11: 560861. PMID 33117308 DOI: 10.3389/fmicb.2020.560861  0.342
2020 Heo H, Kwon M, Song B, Yoon S. Physiological characterization of soil DNRA bacteria isolated via a colorimetric screening method implies involvement of NO in ecophysiological regulation of DNRA activity. Applied and Environmental Microbiology. PMID 32631862 DOI: 10.1128/Aem.01054-20  0.363
2020 Seeley ME, Song B, Passie R, Hale RC. Microplastics affect sedimentary microbial communities and nitrogen cycling. Nature Communications. 11: 2372. PMID 32398678 DOI: 10.1038/S41467-020-16235-3  0.513
2020 Park Y, Cha J, Song B, Huang Y, Kim S, Kim S, Jo E, Fortin S, An S. Total Microbial Activity and Sulfur Cycling Microbe Changes in Response to the Development of Hypoxia in a Shallow Estuary Ocean Science Journal. 55: 165-181. DOI: 10.1007/S12601-020-0011-0  0.457
2019 Semedo M, Song B. From genes to nitrogen removal: determining the impacts of poultry industry wastewater on tidal creek denitrification. Environmental Science & Technology. PMID 31825200 DOI: 10.1021/Acs.Est.9B03560  0.475
2019 Yoon S, Song B, Phillips RL, Chang J, Song MJ. Ecological and physiological implications of nitrogen oxide reduction pathways on greenhouse gas emissions in agroecosystems. Fems Microbiology Ecology. PMID 31077302 DOI: 10.1093/Femsec/Fiz066  0.349
2018 Hong Y, Wu J, Wilson S, Song B. Vertical Stratification of Sediment Microbial Communities Along Geochemical Gradients of a Subterranean Estuary Located at the Gloucester Beach of Virginia, United States. Frontiers in Microbiology. 9: 3343. PMID 30687299 DOI: 10.3389/Fmicb.2018.03343  0.487
2018 Häggblom MM, Song B, Lalucat J. Norberto J. Palleroni (1922-2018). Environmental Microbiology. PMID 30289611 DOI: 10.1111/1462-2920.14415  0.49
2018 Semedo M, Song B, Sparrer T, Phillips RL. Antibiotic Effects on Microbial Communities Responsible for Denitrification and NO Production in Grassland Soils. Frontiers in Microbiology. 9: 2121. PMID 30254616 DOI: 10.3389/Fmicb.2018.02121  0.398
2017 Van Duc L, Song B, Ito H, Hama T, Otani M, Kawagoshi Y. High growth potential and nitrogen removal performance of marine anammox bacteria in shrimp-aquaculture sediment. Chemosphere. 196: 69-77. PMID 29291516 DOI: 10.1016/J.Chemosphere.2017.12.159  0.461
2017 Arfken A, Song B, Bowman JS, Piehler M. Denitrification potential of the eastern oyster microbiome using a 16S rRNA gene based metabolic inference approach. Plos One. 12: e0185071. PMID 28934286 DOI: 10.1371/Journal.Pone.0185071  0.471
2017 Lisa JA, Jayakumar A, Ward BB, Song B. nirS-type denitrifying bacterial assemblages respond to environmental conditions of a shallow estuary. Environmental Microbiology Reports. PMID 28914491 DOI: 10.1111/1758-2229.12594  0.762
2017 Smyth AR, Murphy AE, Anderson IC, Song B. Differential Effects of Bivalves on Sediment Nitrogen Cycling in a Shallow Coastal Bay Estuaries and Coasts. 41: 1147-1163. DOI: 10.1007/S12237-017-0344-9  0.444
2016 Phillips RL, Song B, McMillan AM, Grelet G, Weir BS, Palmada T, Tobias C. Chemical formation of hybrid di-nitrogen calls fungal codenitrification into question. Scientific Reports. 6: 39077. PMID 27976694 DOI: 10.1038/Srep39077  0.377
2016 Stoliker DL, Repert DA, Smith RL, Song B, LeBlanc DR, McCobb TD, Conaway CH, Hyun SP, Koh DC, Moon HS, Kent DB. Hydrologic Controls on Nitrogen Cycling Processes and Functional Gene Abundance in Sediments of a Groundwater Flow-Through Lake. Environmental Science & Technology. PMID 26967929 DOI: 10.1021/Acs.Est.5B06155  0.482
2016 Graham EB, Knelman JE, Schindlbacher A, Siciliano S, Breulmann M, Yannarell A, Beman JM, Abell G, Philippot L, Prosser J, Foulquier A, Yuste JC, Glanville HC, Jones DL, Angel R, ... ... Song B, et al. Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes? Frontiers in Microbiology. 7: 214. PMID 26941732 DOI: 10.3389/Fmicb.2016.00214  0.46
2016 Lancaster NA, Bushey JT, Tobias CR, Song B, Vadas TM. Impact of chloride on denitrification potential in roadside wetlands. Environmental Pollution (Barking, Essex : 1987). 212: 216-223. PMID 26845369 DOI: 10.1016/J.Envpol.2016.01.068  0.453
2016 Phillips R, Grelet G, McMillan A, Song B, Weir B, Palmada T, Tobias C. Fungal denitrification: Bipolaris sorokiniana exclusively denitrifies inorganic nitrogen in the presence and absence of oxygen. Fems Microbiology Letters. 363. PMID 26764425 DOI: 10.1093/Femsle/Fnw007  0.388
2016 Murphy AE, Anderson IC, Smyth AR, Song B, Luckenbach MW. Microbial nitrogen processing in hard clam (Mercenaria mercenaria) aquaculture sediments: the relative importance of denitrification and dissimilatory nitrate reduction to ammonium (DNRA) Limnology and Oceanography. 61: 1589-1604. DOI: 10.1002/Lno.10305  0.48
2015 Smith RL, Böhlke JK, Song B, Tobias CR. Role of Anaerobic Ammonium Oxidation (Anammox) in Nitrogen Removal from a Freshwater Aquifer. Environmental Science & Technology. 49: 12169-77. PMID 26401911 DOI: 10.1021/Acs.Est.5B02488  0.462
2015 Arfken AM, Song B, Mallin MA. Assessing hog lagoon waste contamination in the Cape Fear Watershed using Bacteroidetes 16S rRNA gene pyrosequencing. Applied Microbiology and Biotechnology. 99: 7283-93. PMID 26189016 DOI: 10.1007/S00253-015-6784-X  0.384
2015 Long A, Song B, Fridey K, Silva A. Detection and diversity of copper containing nitrite reductase genes (nirK) in prokaryotic and fungal communities of agricultural soils. Fems Microbiology Ecology. 91: 1-9. PMID 25764542 DOI: 10.1093/Femsec/Fiu004  0.427
2015 Arfken AM, Song B, Sung JS. Comparison of airborne bacterial communities from a hog farm and spray field. Journal of Microbiology and Biotechnology. 25: 709-17. PMID 25406533 DOI: 10.4014/Jmb.1408.08005  0.369
2015 Hines DE, Lisa JA, Song B, Tobias CR, Borrett SR. Estimating the effects of seawater intrusion on an estuarine nitrogen cycle by comparative network analysis Marine Ecology Progress Series. 524: 137-154. DOI: 10.3354/Meps11187  0.751
2015 Lisa JA, Song B, Tobias CR, Hines DE. Genetic and biogeochemical investigation of sedimentary nitrogen cycling communities responding to tidal and seasonal dynamics in Cape Fear River Estuary Estuarine, Coastal and Shelf Science. 167: A313-A323. DOI: 10.1016/J.Ecss.2015.09.008  0.783
2015 Repert DA, Underwood JC, Smith RL, Song B. Nitrogen cycling processes and microbial community composition in bed sediments in the Yukon River at Pilot Station Journal of Geophysical Research G: Biogeosciences. DOI: 10.1002/2014Jg002707  0.537
2014 Song B, Lisa JA, Tobias CR. Linking DNRA community structure and activity in a shallow lagoonal estuarine system. Frontiers in Microbiology. 5: 460. PMID 25232351 DOI: 10.3389/Fmicb.2014.00460  0.776
2014 Song B, Buckner CT, Hembury DJ, Mills RA, Palmer MR. Impact of volcanic ash on anammox communities in deep sea sediments. Environmental Microbiology Reports. 6: 159-66. PMID 24596289 DOI: 10.1111/1758-2229.12137  0.516
2014 Kim IS, Ekpeghere KI, Ha SY, Kim BS, Song B, Kim JT, Kim HG, Koh SC. Full-scale biological treatment of tannery wastewater using the novel microbial consortium BM-S-1. Journal of Environmental Science and Health. Part a, Toxic/Hazardous Substances & Environmental Engineering. 49: 355-64. PMID 24279627 DOI: 10.1080/10934529.2014.846707  0.358
2014 Lisa JA, Song B, Tobias CR, Duernberger KA. Impacts of freshwater flushing on anammox community structure and activities in the New River Estuary, USA Aquatic Microbial Ecology. 72: 17-31. DOI: 10.3354/Ame01682  0.783
2013 Kim IS, Ekpeghere K, Ha SY, Kim SH, Kim BS, Song B, Chun J, Chang JS, Kim HG, Koh SC. An eco-friendly treatment of tannery wastewater using bioaugmentation with a novel microbial consortium. Journal of Environmental Science and Health. Part a, Toxic/Hazardous Substances & Environmental Engineering. 48: 1732-9. PMID 23947713 DOI: 10.1080/10934529.2013.815563  0.369
2013 Vicente J, Stewart A, Song B, Hill RT, Wright JL. Biodiversity of Actinomycetes associated with Caribbean sponges and their potential for natural product discovery. Marine Biotechnology (New York, N.Y.). 15: 413-24. PMID 23344968 DOI: 10.1007/S10126-013-9493-4  0.408
2013 Borin S, Mapelli F, Rolli E, Song B, Tobias C, Schmid MC, De Lange GJ, Reichart GJ, Schouten S, Jetten M, Daffonchio D. Anammox bacterial populations in deep marine hypersaline gradient systems. Extremophiles : Life Under Extreme Conditions. 17: 289-99. PMID 23340764 DOI: 10.1007/S00792-013-0516-X  0.512
2013 Long A, Heitman J, Tobias C, Philips R, Song B. Co-occurring anammox, denitrification, and codenitrification in agricultural soils. Applied and Environmental Microbiology. 79: 168-76. PMID 23087029 DOI: 10.1128/Aem.02520-12  0.398
2013 Giblin AE, Tobias CR, Song B, Weston N, Banta GT, Rivera-Monroy VH. The importance of dissimilatory nitrate reduction to ammonium (DNRA) in the nitrogen cycle of coastal ecosystems Oceanography. 26: 124-131. DOI: 10.5670/Oceanog.2013.54  0.45
2012 Cahoon LB, Halkides CJ, Song B, Williams CM, Dubay GR, Fries A, Farmer J, Fridrich W, Brookshire C. Swine waste as a source of natural products: A carotenoid antioxidant Agricultural Sciences. 3: 806-815. DOI: 10.4236/As.2012.36098  0.306
2012 Hines DE, Lisa JA, Song B, Tobias CR, Borrett SR. A network model shows the importance of coupled processes in the microbial N cycle in the Cape Fear River Estuary Estuarine, Coastal and Shelf Science. 106: 45-57. DOI: 10.1016/J.Ecss.2012.04.018  0.76
2011 López-Legentil S, Song B, Bosch M, Pawlik JR, Turon X. Cyanobacterial diversity and a new acaryochloris-like symbiont from Bahamian sea-squirts. Plos One. 6: e23938. PMID 21915246 DOI: 10.1371/Journal.Pone.0023938  0.377
2011 Bhadury P, Song B, Ward BB. Intron features of key functional genes mediating nitrogen metabolism in marine phytoplankton. Marine Genomics. 4: 207-13. PMID 21867973 DOI: 10.1016/J.Margen.2011.06.002  0.37
2011 Song B, Tobias CR. Molecular and stable isotope methods to detect and measure anaerobic ammonium oxidation (anammox) in aquatic ecosystems. Methods in Enzymology. 496: 63-89. PMID 21514460 DOI: 10.1016/B978-0-12-386489-5.00003-8  0.491
2011 Yu EY, Kwon MA, Lee M, Oh JY, Choi JE, Lee JY, Song BK, Hahm DH, Song JK. Isolation and characterization of cold-active family VIII esterases from an arctic soil metagenome. Applied Microbiology and Biotechnology. 90: 573-81. PMID 21318360 DOI: 10.1007/S00253-011-3132-7  0.347
2011 Hirsch MD, Long ZT, Song B. Anammox bacterial diversity in various aquatic ecosystems based on the detection of hydrazine oxidase genes (hzoA/hzoB). Microbial Ecology. 61: 264-76. PMID 20838786 DOI: 10.1007/S00248-010-9743-1  0.46
2010 Mallin MA, Haltom MI, Song B, Tavares ME, Dellies SP. Bacterial source tracking guides management of boat head waste in a coastal resort area. Journal of Environmental Management. 91: 2748-53. PMID 20727664 DOI: 10.1016/J.Jenvman.2010.07.043  0.362
2010 López-Legentil S, Erwin PM, Pawlik JR, Song B. Effects of sponge bleaching on ammonia-oxidizing Archaea: distribution and relative expression of ammonia monooxygenase genes associated with the barrel sponge Xestospongia muta. Microbial Ecology. 60: 561-71. PMID 20390264 DOI: 10.1007/S00248-010-9662-1  0.428
2010 López-Legentil S, Song B, DeTure M, Baden DG. Characterization and localization of a hybrid non-ribosomal peptide synthetase and polyketide synthase gene from the toxic dinoflagellate Karenia brevis. Marine Biotechnology (New York, N.Y.). 12: 32-41. PMID 19468793 DOI: 10.1007/S10126-009-9197-Y  0.317
2009 Song B, Chyun E, Jaffé PR, Ward BB. Molecular methods to detect and monitor dissimilatory arsenate-respiring bacteria (DARB) in sediments. Fems Microbiology Ecology. 68: 108-17. PMID 19291024 DOI: 10.1111/J.1574-6941.2009.00657.X  0.493
2009 Dale OR, Tobias CR, Song B. Biogeographical distribution of diverse anaerobic ammonium oxidizing (anammox) bacteria in Cape Fear River Estuary. Environmental Microbiology. 11: 1194-207. PMID 19161435 DOI: 10.1111/J.1462-2920.2008.01850.X  0.519
2008 Chae JC, Song B, Zylstra GJ. Identification of genes coding for hydrolytic dehalogenation in the metagenome derived from a denitrifying 4-chlorobenzoate degrading consortium. Fems Microbiology Letters. 281: 203-9. PMID 18355280 DOI: 10.1111/J.1574-6968.2008.01106.X  0.354
2008 Rich JJ, Dale OR, Song B, Ward BB. Anaerobic ammonium oxidation (anammox) in Chesapeake Bay sediments. Microbial Ecology. 55: 311-20. PMID 17619213 DOI: 10.1007/S00248-007-9277-3  0.468
2007 Park H, Song B, Morel FM. Diversity of the cadmium-containing carbonic anhydrase in marine diatoms and natural waters. Environmental Microbiology. 9: 403-13. PMID 17222138 DOI: 10.1111/J.1462-2920.2006.01151.X  0.318
2007 Lear G, Song B, Gault AG, Polya DA, Lloyd JR. Molecular analysis of arsenate-reducing bacteria within Cambodian sediments following amendment with acetate. Applied and Environmental Microbiology. 73: 1041-8. PMID 17114326 DOI: 10.1128/Aem.01654-06  0.451
2007 Song B, Ward BB. MOLECULAR CLONING AND CHARACTERIZATION OF HIGH-AFFINITY NITRATE TRANSPORTERS IN MARINE PHYTOPLANKTON Journal of Phycology. 43: 542-552. DOI: 10.1111/J.1529-8817.2007.00352.X  0.398
2005 Song B, Ward BB. Genetic diversity of benzoyl coenzyme A reductase genes detected in denitrifying isolates and estuarine sediment communities. Applied and Environmental Microbiology. 71: 2036-45. PMID 15812036 DOI: 10.1128/Aem.71.4.2036-2045.2005  0.436
2005 Allen AE, Ward BB, Song B. Characterization of diatom (Bacillariophyceae) nitrate reductase genes and their detection in marine phytoplankton communities Journal of Phycology. 41: 95-104. DOI: 10.1111/J.1529-8817.2005.04090.X  0.359
2004 Song B, Ward BB. MOLECULAR CHARACTERIZATION OF THE ASSIMILATORY NITRATE REDUCTASE GENE AND ITS EXPRESSION IN THE MARINE GREEN ALGA DUNALIELLA TERTIOLECTA (CHLOROPHYCEAE)1 Journal of Phycology. 40: 721-731. DOI: 10.1111/J.1529-8817.2004.03078.X  0.352
2003 Song B, Ward BB. Nitrite reductase genes in halobenzoate degrading denitrifying bacteria. Fems Microbiology Ecology. 43: 349-57. PMID 19719666 DOI: 10.1111/J.1574-6941.2003.Tb01075.X  0.358
2002 Song B, Kerkhof LJ, Häggblom MM. Characterization of bacterial consortia capable of degrading 4-chlorobenzoate and 4-bromobenzoate under denitrifying conditions. Fems Microbiology Letters. 213: 183-8. PMID 12167535 DOI: 10.1111/J.1574-6968.2002.Tb11303.X  0.618
2000 Song B, Palleroni NJ, Häggblom MM. Isolation and characterization of diverse halobenzoate-degrading denitrifying bacteria from soils and sediments. Applied and Environmental Microbiology. 66: 3446-53. PMID 10919805 DOI: 10.1128/Aem.66.8.3446-3453.2000  0.6
2000 Vargas C, Song B, Camps M, Häggblom MM. Anaerobic degradation of fluorinated aromatic compounds. Applied Microbiology and Biotechnology. 53: 342-7. PMID 10772477 DOI: 10.1007/S002530050032  0.362
1999 Song B, Häggblom MM, Zhou J, Tiedje JM, Palleroni NJ. Taxonomic characterization of denitrifying bacteria that degrade aromatic compounds and description of Azoarcus toluvorans sp. nov. and Azoarcus toluclasticus sp. nov. International Journal of Systematic Bacteriology. 49: 1129-40. PMID 10425771 DOI: 10.1099/00207713-49-3-1129  0.546
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