Yinjie Tang, Ph.D. - Publications

2004 University of Washington, Seattle, Seattle, WA 
Chemical Engineering, Environmental Engineering, Microbiology Biology

54 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Czajka JJ, Abernathy MH, Benites VT, Baidoo EEK, Deming JW, Tang YJ. Model metabolic strategy for heterotrophic bacteria in the cold ocean based on 34H. Proceedings of the National Academy of Sciences of the United States of America. PMID 30446608 DOI: 10.1073/pnas.1807804115  0.44
2016 Hollinshead WD, Rodriguez S, Martin HG, Wang G, Baidoo EE, Sale KL, Keasling JD, Mukhopadhyay A, Tang YJ. Examining Escherichia coli glycolytic pathways, catabolite repression, and metabolite channeling using Δpfk mutants. Biotechnology For Biofuels. 9: 212. PMID 27766116 DOI: 10.1186/s13068-016-0630-y  1
2016 Varman AM, He L, Follenfant R, Wu W, Wemmer S, Wrobel SA, Tang YJ, Singh S. Decoding how a soil bacterium extracts building blocks and metabolic energy from ligninolysis provides road map for lignin valorization. Proceedings of the National Academy of Sciences of the United States of America. PMID 27634497 DOI: 10.1073/pnas.1606043113  1
2016 Wu SG, Wang Y, Jiang W, Oyetunde T, Yao R, Zhang X, Shimizu K, Tang YJ, Bao FS. Rapid Prediction of Bacterial Heterotrophic Fluxomics Using Machine Learning and Constraint Programming. Plos Computational Biology. 12: e1004838. PMID 27092947 DOI: 10.1371/journal.pcbi.1004838  1
2016 Wu G, Yan Q, Jones JA, Tang YJ, Fong SS, Koffas MA. Metabolic Burden: Cornerstones in Synthetic Biology and Metabolic Engineering Applications. Trends in Biotechnology. PMID 26996613 DOI: 10.1016/j.tibtech.2016.02.010  1
2015 Hollinshead WD, Henson WR, Abernathy M, Moon TS, Tang YJ. Rapid metabolic analysis of Rhodococcus opacus PD630 via parallel (13) C-metabolite fingerprinting. Biotechnology and Bioengineering. PMID 26174624 DOI: 10.1002/bit.25702  1
2015 Ray JR, Tadepalli S, Nergiz SZ, Liu KK, You L, Tang Y, Singamaneni S, Jun YS. Hydrophilic, bactericidal nanoheater-enabled reverse osmosis membranes to improve fouling resistance Acs Applied Materials and Interfaces. 7: 11117-11126. DOI: 10.1021/am509174j  1
2015 You L, Liu H, Blankenship RE, Tang YJ. Using photosystem i as a reporter protein for 13C analysis in a coculture containing cyanobacterium and a heterotrophic bacterium Analytical Biochemistry. 477: 86-88. DOI: 10.1016/j.ab.2014.12.005  1
2015 Wan N, Abernathy M, Tang JKH, Tang YJ, You L. Cyanobacterial photo-driven mixotrophic metabolism and its advantages for biosynthesis Frontiers of Chemical Science and Engineering. DOI: 10.1007/s11705-015-1521-7  1
2014 Hollinshead WD, Varman AM, You L, Hembree Z, Tang YJ. Boosting D-lactate production in engineered cyanobacteria using sterilized anaerobic digestion effluents. Bioresource Technology. 169: 462-7. PMID 25084044 DOI: 10.1016/j.biortech.2014.07.003  1
2014 Zhuang WQ, Yi S, Bill M, Brisson VL, Feng X, Men Y, Conrad ME, Tang YJ, Alvarez-Cohen L. Incomplete Wood-Ljungdahl pathway facilitates one-carbon metabolism in organohalide-respiring Dehalococcoides mccartyi. Proceedings of the National Academy of Sciences of the United States of America. 111: 6419-24. PMID 24733917 DOI: 10.1073/pnas.1321542111  1
2014 You L, Berla B, He L, Pakrasi HB, Tang YJ. 13C-MFA delineates the photomixotrophic metabolism of Synechocystis sp. PCC 6803 under light- and carbon-sufficient conditions. Biotechnology Journal. 9: 684-92. PMID 24659531 DOI: 10.1002/biot.201300477  1
2014 Varman AM, He L, You L, Hollinshead W, Tang YJ. Elucidation of intrinsic biosynthesis yields using 13C-based metabolism analysis. Microbial Cell Factories. 13: 42. PMID 24642094 DOI: 10.1186/1475-2859-13-42  1
2014 He L, Xiao Y, Gebreselassie N, Zhang F, Antoniewiez MR, Tang YJ, Peng L. Central metabolic responses to the overproduction of fatty acids in Escherichia coli based on 13C-metabolic flux analysis. Biotechnology and Bioengineering. 111: 575-85. PMID 24122357 DOI: 10.1002/bit.25124  1
2013 Varman AM, Yu Y, You L, Tang YJ. Photoautotrophic production of D-lactic acid in an engineered cyanobacterium. Microbial Cell Factories. 12: 117. PMID 24274114 DOI: 10.1186/1475-2859-12-117  1
2013 Varman AM, Xiao Y, Pakrasi HB, Tang YJ. Metabolic engineering of Synechocystis sp. strain PCC 6803 for isobutanol production. Applied and Environmental Microbiology. 79: 908-14. PMID 23183979 DOI: 10.1128/AEM.02827-12  1
2013 Xiao Y, Ruan Z, Liu Z, Wu SG, Varman AM, Liu Y, Tang YJ. Engineering Escherichia coli to convert acetic acid to free fatty acids Biochemical Engineering Journal. 76: 60-69. DOI: 10.1016/j.bej.2013.04.013  1
2012 Feng X, Zhuang WQ, Colletti P, Tang YJ. Metabolic pathway determination and flux analysis in nonmodel microorganisms through 13C-isotope labeling. Methods in Molecular Biology (Clifton, N.J.). 881: 309-30. PMID 22639218 DOI: 10.1007/978-1-61779-827-6_11  1
2012 You L, Page L, Feng X, Berla B, Pakrasi HB, Tang YJ. Metabolic pathway confirmation and discovery through (13)C-labeling of proteinogenic amino acids. Journal of Visualized Experiments : Jove. e3583. PMID 22314852 DOI: 10.3791/3583  1
2012 Xiao Y, Feng X, Varman AM, He L, Yu H, Tang YJ. Kinetic modeling and isotopic investigation of isobutanol fermentation by two engineered escherichia coli strains Industrial and Engineering Chemistry Research. 51: 15855-15863. DOI: 10.1021/ie202936t  1
2011 Hemme CL, Fields MW, He Q, Deng Y, Lin L, Tu Q, Mouttaki H, Zhou A, Feng X, Zuo Z, Ramsay BD, He Z, Wu L, Van Nostrand J, Xu J, ... Tang YJ, et al. Correlation of genomic and physiological traits of thermoanaerobacter species with biofuel yields. Applied and Environmental Microbiology. 77: 7998-8008. PMID 21948836 DOI: 10.1128/AEM.05677-11  1
2011 Sahu M, Wu B, Zhu L, Jacobson C, Wang WN, Jones K, Goyal Y, Tang YJ, Biswas P. Role of dopant concentration, crystal phase and particle size on microbial inactivation of Cu-doped TiO2 nanoparticles. Nanotechnology. 22: 415704. PMID 21918299 DOI: 10.1088/0957-4484/22/41/415704  1
2011 Zhuang WQ, Yi S, Feng X, Zinder SH, Tang YJ, Alvarez-Cohen L. Selective utilization of exogenous amino acids by Dehalococcoides ethenogenes strain 195 and its effects on growth and dechlorination activity. Applied and Environmental Microbiology. 77: 7797-803. PMID 21890673 DOI: 10.1128/AEM.05676-11  1
2011 Tang KH, Tang YJ, Blankenship RE. Carbon metabolic pathways in phototrophic bacteria and their broader evolutionary implications. Frontiers in Microbiology. 2: 165. PMID 21866228 DOI: 10.3389/fmicb.2011.00165  1
2011 Wu B, Zhuang WQ, Sahu M, Biswas P, Tang YJ. Cu-doped TiO(2) nanoparticles enhance survival of Shewanella oneidensis MR-1 under ultraviolet light (UV) exposure. The Science of the Total Environment. 409: 4635-9. PMID 21855961 DOI: 10.1016/j.scitotenv.2011.07.037  1
2011 Varman AM, Xiao Y, Leonard E, Tang YJ. Statistics-based model for prediction of chemical biosynthesis yield from Saccharomyces cerevisiae. Microbial Cell Factories. 10: 45. PMID 21689458 DOI: 10.1186/1475-2859-10-45  1
2011 Colletti PF, Goyal Y, Varman AM, Feng X, Wu B, Tang YJ. Evaluating factors that influence microbial synthesis yields by linear regression with numerical and ordinal variables. Biotechnology and Bioengineering. 108: 893-901. PMID 21404262 DOI: 10.1002/bit.22996  1
2010 Feng X, Page L, Rubens J, Chircus L, Colletti P, Pakrasi HB, Tang YJ. Bridging the gap between fluxomics and industrial biotechnology. Journal of Biomedicine & Biotechnology. 2010: 460717. PMID 21274256 DOI: 10.1155/2010/460717  1
2010 Wu B, Shao H, Wang Z, Hu Y, Tang YJ, Jun YS. Viability and metal reduction of Shewanella oneidensis MR-1 under CO2 stress: implications for ecological effects of CO2 leakage from geologic CO2 sequestration. Environmental Science & Technology. 44: 9213-8. PMID 21058700 DOI: 10.1021/es102299j  1
2010 Feng X, Tang KH, Blankenship RE, Tang YJ. Metabolic flux analysis of the mixotrophic metabolisms in the green sulfur bacterium Chlorobaculum tepidum. The Journal of Biological Chemistry. 285: 39544-50. PMID 20937805 DOI: 10.1074/jbc.M110.162958  1
2010 Tang KH, Feng X, Zhuang WQ, Alvarez-Cohen L, Blankenship RE, Tang YJ. Carbon flow of heliobacteria is related more to clostridia than to the green sulfur bacteria. The Journal of Biological Chemistry. 285: 35104-12. PMID 20807773 DOI: 10.1074/jbc.M110.163303  1
2010 Feng X, Bandyopadhyay A, Berla B, Page L, Wu B, Pakrasi HB, Tang YJ. Mixotrophic and photoheterotrophic metabolism in Cyanothece sp. ATCC 51142 under continuous light. Microbiology (Reading, England). 156: 2566-74. PMID 20430816 DOI: 10.1099/mic.0.038232-0  1
2010 Wu B, Wang Y, Lee YH, Horst A, Wang Z, Chen DR, Sureshkumar R, Tang YJ. Comparative eco-toxicities of nano-ZnO particles under aquatic and aerosol exposure modes. Environmental Science & Technology. 44: 1484-9. PMID 20102184 DOI: 10.1021/es9030497  1
2010 Wu B, Huang R, Sahu M, Feng X, Biswas P, Tang YJ. Bacterial responses to Cu-doped TiO(2) nanoparticles. The Science of the Total Environment. 408: 1755-8. PMID 19931887 DOI: 10.1016/j.scitotenv.2009.11.004  1
2010 Shaikh AS, Tang YJ, Mukhopadhyay A, Martín HG, Gin J, Benke PI, Keasling JD. Study of stationary phase metabolism via isotopomer analysis of amino acids from an isolated protein. Biotechnology Progress. 26: 52-6. PMID 19899123 DOI: 10.1002/btpr.325  1
2010 Wu B, Zhang B, Feng X, Rubens JR, Huang R, Hicks LM, Pakrasi HB, Tang YJ. Alternative isoleucine synthesis pathway in cyanobacterial species. Microbiology (Reading, England). 156: 596-602. PMID 19875435 DOI: 10.1099/mic.0.031799-0  1
2010 Torkamani S, Wani SN, Tang YJ, Sureshkumar R. Plasmon-enhanced microalgal growth in miniphotobioreactors Applied Physics Letters. 97. DOI: 10.1063/1.3467263  1
2009 Tang KH, Feng X, Tang YJ, Blankenship RE. Carbohydrate metabolism and carbon fixation in Roseobacter denitrificans OCh114. Plos One. 4: e7233. PMID 19794911 DOI: 10.1371/journal.pone.0007233  1
2009 Tang YJ, Martin HG, Deutschbauer A, Feng X, Huang R, Llora X, Arkin A, Keasling JD. Invariability of central metabolic flux distribution in Shewanella oneidensis MR-1 under environmental or genetic perturbations. Biotechnology Progress. 25: 1254-9. PMID 19610125 DOI: 10.1002/btpr.227  1
2009 Tang YJ, Yi S, Zhuang WQ, Zinder SH, Keasling JD, Alvarez-Cohen L. Investigation of carbon metabolism in "Dehalococcoides ethenogenes" strain 195 by use of isotopomer and transcriptomic analyses. Journal of Bacteriology. 191: 5224-31. PMID 19525347 DOI: 10.1128/JB.00085-09  1
2009 Feng X, Mouttaki H, Lin L, Huang R, Wu B, Hemme CL, He Z, Zhang B, Hicks LM, Xu J, Zhou J, Tang YJ. Characterization of the central metabolic pathways in Thermoanaerobacter sp. strain X514 via isotopomer-assisted metabolite analysis. Applied and Environmental Microbiology. 75: 5001-8. PMID 19525270 DOI: 10.1128/AEM.00715-09  1
2009 Tang YJ, Shui W, Myers S, Feng X, Bertozzi C, Keasling JD. Central metabolism in Mycobacterium smegmatis during the transition from O2-rich to O2-poor conditions as studied by isotopomer-assisted metabolite analysis. Biotechnology Letters. 31: 1233-40. PMID 19357814 DOI: 10.1007/s10529-009-9991-7  1
2009 Tang YJ, Martin HG, Dehal PS, Deutschbauer A, Llora X, Meadows A, Arkin A, Keasling JD. Metabolic flux analysis of Shewanella spp. reveals evolutionary robustness in central carbon metabolism. Biotechnology and Bioengineering. 102: 1161-9. PMID 19031428 DOI: 10.1002/bit.22129  1
2009 Tang YJ, Martin HG, Myers S, Rodriguez S, Baidoo EE, Keasling JD. Advances in analysis of microbial metabolic fluxes via (13)C isotopic labeling. Mass Spectrometry Reviews. 28: 362-75. PMID 19025966 DOI: 10.1002/mas.20191  1
2009 Tang YJ, Sapra R, Joyner D, Hazen TC, Myers S, Reichmuth D, Blanch H, Keasling JD. Analysis of metabolic pathways and fluxes in a newly discovered thermophilic and ethanol-tolerant geobacillus strain Biotechnology and Bioengineering. 102: 1377-1386. PMID 19016470 DOI: 10.1002/bit.22181  1
2008 Garcia DE, Baidoo EE, Benke PI, Pingitore F, Tang YJ, Villa S, Keasling JD. Separation and mass spectrometry in microbial metabolomics. Current Opinion in Microbiology. 11: 233-9. PMID 18538626 DOI: 10.1016/j.mib.2008.04.002  1
2007 Tang YJ, Krieger-Brockett B. Mathematical analysis of the whole core injection method accuracy for measuring phenanthrene biodegradation rates in undisturbed marine sediments. Chemosphere. 68: 804-13. PMID 17412394 DOI: 10.1016/j.chemosphere.2007.02.038  1
2007 Tang YJ, Ashcroft JM, Chen D, Min G, Kim CH, Murkhejee B, Larabell C, Keasling JD, Chen FF. Charge-associated effects of fullerene derivatives on microbial structural integrity and central metabolism. Nano Letters. 7: 754-60. PMID 17288489 DOI: 10.1021/nl063020t  1
2007 Tang YJ, Meadows AL, Kirby J, Keasling JD. Anaerobic central metabolic pathways in Shewanella oneidensis MR-1 reinterpreted in the light of isotopic metabolite labeling. Journal of Bacteriology. 189: 894-901. PMID 17114268 DOI: 10.1128/JB.00926-06  1
2007 Tang YJ, Hwang JS, Wemmer DE, Keasling JD. Shewanella oneidensis MR-1 fluxome under various oxygen conditions. Applied and Environmental Microbiology. 73: 718-29. PMID 17098921 DOI: 10.1128/AEM.01532-06  1
2007 Tang YJ, Meadows AL, Keasling JD. A kinetic model describing Shewanella oneidensis MR-1 growth, substrate consumption, and product secretion. Biotechnology and Bioengineering. 96: 125-33. PMID 16865732 DOI: 10.1002/bit.21101  1
2006 Tang YJ, Carpenter SD, Deming JW, Krieger-Brockett B. Depth-related influences on biodegradation rates of phenanthrene in polluted marine sediments of Puget Sound, WA. Marine Pollution Bulletin. 52: 1431-40. PMID 16780896 DOI: 10.1016/j.marpolbul.2006.04.009  1
2005 Tang YJ, Carpenter S, Deming J, Krieger-Brockett B. Controlled release of nitrate and sulfate to enhance anaerobic bioremediation of phenanthrene in marine sediments. Environmental Science & Technology. 39: 3368-73. PMID 15926591 DOI: 10.1021/es040427w  1
2005 Tang YJ, Qi L, Krieger-Brockett B. Evaluating factors that influence microbial phenanthrene biodegradation rates by regression with categorical variables. Chemosphere. 59: 729-41. PMID 15792671 DOI: 10.1016/j.chemosphere.2004.10.037  1
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