Petia Z. Gatzeva-Topalova, Ph.D. - Related publications

2005 University of Colorado, Boulder, Boulder, CO, United States 
Biochemistry, Medical Biophysics, General Biophysics, Microbiology Biology
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Yun CS, Nishimoto K, Motoyama T, Shimizu T, Hino T, Dohmae N, Nagano S, Osada H. Unique features of the ketosynthase domain in a non-ribosomal peptide synthetase-polyketide synthase hybrid enzyme, tenuazonic acid synthetase 1. The Journal of Biological Chemistry. PMID 32565425 DOI: 10.1074/jbc.RA120.013105   
2020 Wyatt JW, Korasick DA, Qureshi IA, Campbell AC, Gates KS, Tanner JJ. Inhibition, crystal structures, and in-solution oligomeric structure of aldehyde dehydrogenase 9A1. Archives of Biochemistry and Biophysics. 108477. PMID 32717224 DOI: 10.1016/   
2020 Huang J, Fraser ME. Tartryl-CoA inhibits succinyl-CoA synthetase. Acta Crystallographica. Section F, Structural Biology Communications. 76: 302-308. PMID 32627745 DOI: 10.1107/S2053230X20008201   
2020 May C, Ji S, Syed ZA, Revoredo L, Daniel EJP, Gerken TA, Tabak LA, Samara NL, Ten Hagen KG. Differential splicing of the lectin domain of an O-glycosyltransferase modulates both peptide and glycopeptide preferences. The Journal of Biological Chemistry. PMID 32669364 DOI: 10.1074/jbc.RA120.014700   
2020 Ishikawa F, Nohara M, Takashima K, Tanabe G. Probing the compatibility of an enzyme-linked immunosorbent assay toward the reprogramming of nonribosomal peptide synthetase adenylation domains. Chembiochem : a European Journal of Chemical Biology. PMID 32533653 DOI: 10.1002/cbic.202000206   
2020 Sarmiento-Pavía PD, Rodríguez-Hernández A, Rodríguez-Romero A, Sosa-Torres ME. The structure of a novel membrane-associated 6-phosphogluconate dehydrogenase from Gluconacetobacter diazotrophicus (Gd6PGD) reveals a subfamily of short-chain 6PGDs. The Febs Journal. PMID 32621793 DOI: 10.1111/febs.15472   
2020 Iacovino LG, Savino S, Borg AJE, Binda C, Nidetzky B, Mattevi A. Crystallographic snapshots of UDP-glucuronic acid 4-epimeraseligand binding, rotation and reduction. The Journal of Biological Chemistry. PMID 32661196 DOI: 10.1074/jbc.RA120.014692   
2020 de Morais MAB, Polo CC, Domingues MN, Persinoti GF, Pirolla RAS, de Souza FHM, Correa JBL, Dos Santos CR, Murakami MT. Exploring the Molecular Basis for Substrate Affinity and Structural Stability in Bacterial GH39 β-Xylosidases. Frontiers in Bioengineering and Biotechnology. 8: 419. PMID 32500063 DOI: 10.3389/fbioe.2020.00419   
2020 Shi H, Tian J, Wu C, Li M, An F, Wu R, Shao J, Zheng Y, Luo X, Tao D, Chen X, Pi Y, Zhao C, Yue X, Wu J. Determination of allosteric and active sites responsible for catalytic activity of delta 12 fatty acid desaturase from Geotrichum candidum and Mortierella alpina by domain swapping. Enzyme and Microbial Technology. 138: 109563. PMID 32527532 DOI: 10.1016/j.enzmictec.2020.109563   
2020 Suarez D, Diaz N. SARS-CoV-2 Main Protease: A Molecular Dynamics Study. Journal of Chemical Information and Modeling. PMID 32678588 DOI: 10.1021/acs.jcim.0c00575   
2020 Grzechowiak M, Sliwiak J, Jaskolski M, Ruszkowski M. Structural Studies of Glutamate Dehydrogenase (Isoform 1) From , an Important Enzyme at the Branch-Point Between Carbon and Nitrogen Metabolism. Frontiers in Plant Science. 11: 754. PMID 32655590 DOI: 10.3389/fpls.2020.00754   
2020 Ali R, Jiao Y, Wall PK, Patching SG, Ahmad I, Lutfulla G, dePamphilis CW. In silico identification and structure function analysis of a putative coclaurine N-methyltransferase from Aristolochia fimbriata Comput Biol Chem. 85: 107201. PMID 31986303 DOI: 10.1016/j.compbiolchem.2020.107201   
2020 Armbruster KM, Komazin G, Meredith TC. Bacterial lyso-form lipoproteins are synthesized via an intramolecular acyl chain migration. The Journal of Biological Chemistry. PMID 32471867 DOI: 10.1074/jbc.RA120.014000   
2020 Fabro G, Cislaghi AP, Condat F, Deza Borau G, Alvarez ME. The N-terminal domain of Arabidopsis proline dehydrogenase affects enzymatic activity and protein oligomerization. Plant Physiology and Biochemistry : Ppb. 154: 268-276. PMID 32574985 DOI: 10.1016/j.plaphy.2020.04.019   
2020 Wang J, Guo Q, Liu L, Wang X. Crystal structure of Arabidopsis thaliana cytidine deaminase. Biochemical and Biophysical Research Communications. 529: 659-665. PMID 32736689 DOI: 10.1016/j.bbrc.2020.06.084   
2020 O'Flynn BG, Prins KC, Shepherd BA, Forbrich VE, Suarez G, Merkler DJ. Identification of catalytically distinct arylalkylamine N-acetyltransferase splicoforms from Tribolium castaneum. Protein Expression and Purification. 105695. PMID 32681959 DOI: 10.1016/j.pep.2020.105695   
2020 Yu J, Wu J, Xie D, Du L, Tang YJ, Xie J, Wei D. Characterization and rational design for substrate specificity of a prolyl endopeptidase from Stenotrophomonas maltophilia. Enzyme and Microbial Technology. 138: 109548. PMID 32527522 DOI: 10.1016/j.enzmictec.2020.109548   
2020 Rouzer CA, Marnett LJ. Structural and Chemical Biology of the Interaction of Cyclooxygenase with Substrates and Non-Steroidal Anti-Inflammatory Drugs. Chemical Reviews. PMID 32609495 DOI: 10.1021/acs.chemrev.0c00215   
2020 Zhang P, Zhang Z, Zhang L, Wang J, Wu C. Glycosyltransferase GT1 family: Phylogenetic distribution, substrates coverage, and representative structural features. Computational and Structural Biotechnology Journal. 18: 1383-1390. PMID 32637037 DOI: 10.1016/j.csbj.2020.06.003   
2020 Saito K, Viborg AH, Sakamoto S, Arakawa T, Yamada C, Fujita K, Fushinobu S. Crystal structure of β-L-arabinobiosidase belonging to glycoside hydrolase family 121. Plos One. 15: e0231513. PMID 32479540 DOI: 10.1371/journal.pone.0231513   
2020 Chen X, Chen J, Yan B, Zhang W, Guddat LW, Liu X, Rao Z. Structural basis for the broad substrate specificity of two acyl-CoA dehydrogenases FadE5 from mycobacteria. Proceedings of the National Academy of Sciences of the United States of America. PMID 32601219 DOI: 10.1073/pnas.2002835117   
2020 Chai S, Zhang X, Jia Z, Xu X, Zhang Y, Wang S, Feng Z. Identification and characterization of a novel bifunctional cellulase/hemicellulase from a soil metagenomic library. Applied Microbiology and Biotechnology. PMID 32666188 DOI: 10.1007/s00253-020-10766-x   
2020 Zajac J, Anderson H, Adams L, Wangmo D, Suhail S, Almen A, Berns L, Coerber B, Dawson L, Hunger A, Jehn J, Johnson J, Plack N, Strasser S, Williams M, et al. Effects of Distal Mutations on Prolyl-Adenylate Formation of Escherichia coli Prolyl-tRNA Synthetase. The Protein Journal. PMID 32681406 DOI: 10.1007/s10930-020-09910-3   
2020 Niu G, Guo Q, Wang J, Zhao S, He Y, Liu L. Structural basis for plant lutein biosynthesis from α-carotene. Proceedings of the National Academy of Sciences of the United States of America. PMID 32513704 DOI: 10.1073/pnas.2001806117   
2020 Healy EF, Flores R, Lynch VM, Toledo S. Protein dynamics of [Cu-Zn] superoxide dismutase (SOD1): How protein motions at the global and local levels impact the reactivity of SOD1. Journal of Inorganic Biochemistry. 210: 111161. PMID 32619897 DOI: 10.1016/j.jinorgbio.2020.111161   
2020 Li Y, Yao Y, Yang G, Tang J, Ayala GJ, Li X, Zhang W, Han Q, Yang T, Wang H, Mayo KH, Su J. Co-crystal Structure of Sucrose Phosphate Synthase With UDP and Sucrose-6-Phosphate Provides Insight Into Its Mechanism of Action Involving an Oxocarbenium Ion and the Glycosidic Bond. Frontiers in Microbiology. 11: 1050. PMID 32528448 DOI: 10.3389/fmicb.2020.01050   
2020 Ishikawa K, Chubachi C, Tochigi S, Hoshi N, Kojima S, Hyodo M, Hayakawa Y, Furuta T, Kera K, Uozumi N. Functional characterization of multiple PAS domain-containing diguanylate cyclases in sp. PCC 6803. Microbiology (Reading, England). PMID 32478657 DOI: 10.1099/mic.0.000929   
2020 Yang J, Ma T, Shang-Guan F, Han Z. Improving the catalytic activity of thermostable xylanase from Thermotoga maritima via mutagenesis of non-catalytic residues at glycone subsites. Enzyme and Microbial Technology. 139: 109579. PMID 32732029 DOI: 10.1016/j.enzmictec.2020.109579   
2020 Widmann C, Ismail M, Sewald N, Niemann HH. Structure of apo flavin-dependent halogenase Xcc4156 hints at a reason for cofactor-soaking difficulties. Acta Crystallographica. Section D, Structural Biology. 76: 687-697. PMID 32627741 DOI: 10.1107/S2059798320007731   
2020 Kim S, Lee SH, Seo H, Kim KJ. Biochemical properties and crystal structure of formate-tetrahydrofolate ligase from Methylobacterium extorquens CM4. Biochemical and Biophysical Research Communications. PMID 32505353 DOI: 10.1016/j.bbrc.2020.05.198   
2020 Hu LX, Feng JJ, Wu J, Li W, Gningue SM, Yang ZM, Wang Z, Liu Y, Xue ZL. Identification of six important amino acid residues of MenA from Bacillus subtilis natto for enzyme activity and formation of menaquinone. Enzyme and Microbial Technology. 138: 109583. PMID 32527527 DOI: 10.1016/j.enzmictec.2020.109583   
2020 Chakrabarty B, Das D, Bung N, Roy A, Bulusu G. Network analysis of hydroxymethylbilane synthase dynamics. Journal of Molecular Graphics & Modelling. 99: 107641. PMID 32619952 DOI: 10.1016/j.jmgm.2020.107641   
2020 Watanabe S, Watanabe Y, Nobuchi R, Ono A. Biochemical and structural characterization of L-2-keto-3-deoxyarabinonate dehydratase: A unique catalytic mechanism in the Class I aldolase protein superfamily. Biochemistry. PMID 32697085 DOI: 10.1021/acs.biochem.0c00515   
2020 Wang S, Meng K, Luo H, Yao B, Tu T. [Research progress in structure and function of pectin methylesterase]. Sheng Wu Gong Cheng Xue Bao = Chinese Journal of Biotechnology. 36: 1021-1030. PMID 32597053 DOI: 10.13345/j.cjb.190418   
2020 Sheng W, Xu B, Chen S, Li Y, Liu B, Wang H. Substrate tolerance of the biosynthetic enzymes of glycosylated lanthipeptide NAI-112. Organic & Biomolecular Chemistry. PMID 32700722 DOI: 10.1039/d0ob01215g   
2020 Rexer TFT, Wenzel L, Hoffmann M, Tischlik S, Bergmann C, Grote V, Boecker S, Bettenbrock K, Schildbach A, Kottler R, Mahour R, Rapp E, Pietzsch M, Reichl U. Synthesis of lipid-linked oligosaccharides by a compartmentalized multi-enzyme cascade for the in vitro N-glycosylation of peptides. Journal of Biotechnology. 322: 54-65. PMID 32653637 DOI: 10.1016/j.jbiotec.2020.07.003   
2020 Mann SA, DeMart MK, May B, Causey CP, Knuckley B. Histone H4-based peptoids are inhibitors of Protein Arginine Methyltransferase 1 (PRMT1). The Biochemical Journal. PMID 32716034 DOI: 10.1042/BCJ20200534   
2020 Weatherhead AW, Crowther JM, Horne CR, Meng Y, Coombes D, Currie MJ, Watkin SAJ, Adams LE, Parthasarathy A, Dobson RCJ, Hudson AO. Structure-Function Studies of the Antibiotic Target l,l-Diaminopimelate Aminotransferase from Reveal an Unusual Oligomeric Structure. Biochemistry. PMID 32478518 DOI: 10.1021/acs.biochem.0c00185   
2020 Stewart NK, Bhattacharya M, Toth M, Smith CA, Vakulenko SB. A Surface Loop Modulates Activity of the Bacillus Class D β-Lactamases. Journal of Structural Biology. 107544. PMID 32512156 DOI: 10.1016/j.jsb.2020.107544   
2020 Goodale A, Michailidis F, Watts R, Chok SC, Hayes F. Characterization of permissive and non-permissive peptide insertion sites in chloramphenicol acetyltransferase. Microbial Pathogenesis. 104395. PMID 32687937 DOI: 10.1016/j.micpath.2020.104395   
2020 Ubbink M, Ben Bdira F, Waudby CA, Volkov AN, Schröder SP, Ab E, Codée JDC, Overkleeft HS, Aerts HMFG, van Ingen H. Dynamics of ligand binding to a rigid glycosidase. Angewandte Chemie (International Ed. in English). PMID 32533782 DOI: 10.1002/anie.202003236   
2020 Collet JF, Cho SH, Iorga BI, Goemans CV. How the assembly and protection of the bacterial cell envelope depend on cysteine residues. The Journal of Biological Chemistry. PMID 32487747 DOI: 10.1074/jbc.REV120.011201   
2020 Lukowski AL, Liu J, Bridwell-Rabb J, Narayan ARH. Structural basis for divergent C-H hydroxylation selectivity in two Rieske oxygenases. Nature Communications. 11: 2991. PMID 32532989 DOI: 10.1038/s41467-020-16729-0   
2020 Buček A, Vazdar M, Tupec M, Svatoš A, Pichová I. Desaturase specificity is controlled by the physicochemical properties of a single amino acid residue in the substrate binding tunnel. Computational and Structural Biotechnology Journal. 18: 1202-1209. PMID 32542106 DOI: 10.1016/j.csbj.2020.05.011   
2020 Gmelch TJ, Sperl JM, Sieber V. Molecular Dynamics Analysis of a Rationally Designed Aldehyde Dehydrogenase Gives Insights into Improved Activity for the Non-Native Cofactor NAD Acs Synthetic Biology. 9: 920-929. PMID 32208678 DOI: 10.1021/acssynbio.9b00527   
2020 Shi C, Miller BR, Alexander EM, Gulick AM, Aldrich CC. Design, Synthesis and Biophysical Evaluation of Mechanism-Based Probes for Condensation Domains of Nonribosomal Peptide Synthetases. Acs Chemical Biology. PMID 32568518 DOI: 10.1021/acschembio.0c00411   
2020 Vázquez-González M, Zhou Z, Biniuri Y, Willner B, Willner I. Mimicking Functions of Native Enzymes or Photosynthetic Reaction-Centers by Nucleoapzymes and Photonucleoapzymes. Biochemistry. PMID 32613829 DOI: 10.1021/acs.biochem.0c00421   
2020 Coleman RE, Vilbert AC, Lancaster KM. The Heme-Lys Cross-Link in Cytochrome P460 Promotes Catalysis by Enforcing Secondary Coordination Sphere Architecture. Biochemistry. PMID 32525655 DOI: 10.1021/acs.biochem.0c00261   
2020 Valentino H, Campbell AC, Schuermann JP, Sultana N, Nam HG, LeBlanc S, Tanner JJ, Sobrado P. Structure and function of a flavin-dependent S-monooxygenase from garlic (Allium sativum). The Journal of Biological Chemistry. PMID 32527723 DOI: 10.1074/jbc.RA120.014484   
2020 Liu X, Zhao J, Zhang Y, Ubarretxena-Belandia I, Forth S, Lieberman RL, Wang C. Substrate-Enzyme Interactions in Intramembrane Proteolysis: γ-Secretase as the Prototype. Frontiers in Molecular Neuroscience. 13: 65. PMID 32508589 DOI: 10.3389/fnmol.2020.00065