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Douglas E. Soltis, Ph.D. - Publications

Affiliations: 
Botany University of Florida, Gainesville, Gainesville, FL, United States 
Area:
Plant Biology
Website:
https://www.floridamuseum.ufl.edu/soltis-lab/doug-soltis/
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Year Citation  Score
2024 Tian Q, Stull GW, Kellermann J, Medan D, Nge FJ, Liu SY, Kates HR, Soltis DE, Soltis PS, Guralnick RP, Folk RA, Onstein RE, Yi TS. Rapid in situ diversification rates in Rhamnaceae explain the parallel evolution of high diversity in temperate biomes from global to local scales. The New Phytologist. PMID 38229185 DOI: 10.1111/nph.19504  0.575
2024 Naranjo AA, Edwards CE, Gitzendanner MA, Soltis DE, Soltis PS. Abundant incongruence in a clade endemic to a biodiversity hotspot: Phylogenetics of the scrub mint clade (Lamiaceae). Molecular Phylogenetics and Evolution. 192: 108014. PMID 38199595 DOI: 10.1016/j.ympev.2024.108014  0.659
2024 Chanderbali AS, Dervinis C, Anghel IG, Soltis DE, Soltis PS, Zapata F. Draft genome assemblies for two species of Escallonia (Escalloniales). Bmc Genomic Data. 25: 1. PMID 38166621 DOI: 10.1186/s12863-023-01186-7  0.648
2023 Zhou W, Shi W, Soltis PS, Soltis DE, Xiang QJ. Foliar endophyte diversity in Eastern Asian-Eastern North American disjunct tree species - influences of host identity, environment, phylogeny, and geographic isolation. Frontiers in Plant Science. 14: 1274746. PMID 38192694 DOI: 10.3389/fpls.2023.1274746  0.72
2023 Liu Y, Zhou Y, Cheng F, Zhou R, Yang Y, Wang Y, Zhang X, Soltis DE, Xiao N, Quan Z, Li J. Chromosome-level genome of putative autohexaploid Actinidia deliciosa provides insights into polyploidisation and evolution. The Plant Journal : For Cell and Molecular Biology. PMID 38112590 DOI: 10.1111/tpj.16592  0.302
2023 Hamilton JP, Vaillancourt B, Wood JC, Wang H, Jiang J, Soltis DE, Buell CR, Soltis PS. Chromosome-scale genome assembly of the 'Munstead' cultivar of Lavandula angustifolia. Bmc Genomic Data. 24: 75. PMID 38093190 DOI: 10.1186/s12863-023-01181-y  0.608
2023 White E, Soltis PS, Soltis DE, Guralnick R. Quantifying error in occurrence data: Comparing the data quality of iNaturalist and digitized herbarium specimen data in flowering plant families of the southeastern United States. Plos One. 18: e0295298. PMID 38060477 DOI: 10.1371/journal.pone.0295298  0.567
2023 Yoo MJ, Koh J, Boatwright JL, Soltis DE, Soltis PS, Barbazuk WB, Chen S. Investigation of regulatory divergence between homoeologs in the recently formed allopolyploids, Tragopogon mirus and T. miscellus (Asteraceae). The Plant Journal : For Cell and Molecular Biology. PMID 37997015 DOI: 10.1111/tpj.16553  0.799
2023 Qian H, Kessler M, Zhang J, Jin Y, Soltis DE, Qian S, Zhou Y, Soltis PS. Angiosperm phylogenetic diversity is lower in Africa than South America. Science Advances. 9: eadj1022. PMID 37967173 DOI: 10.1126/sciadv.adj1022  0.622
2023 Lopes JML, Nascimento LSQ, Souza VC, de Matos EM, Fortini EA, Grazul RM, Santos MO, Soltis DE, Soltis PS, Otoni WC, Viccini LF. Water stress modulates terpene biosynthesis and morphophysiology at different ploidal levels in Lippia alba (Mill.) N. E. Brown (Verbenaceae). Protoplasma. PMID 37665420 DOI: 10.1007/s00709-023-01890-2  0.548
2023 Spoelhof JP, Soltis PS, Soltis DE. Doubling down on polyploidy. The New Phytologist. PMID 37606219 DOI: 10.1111/nph.19223  0.476
2023 Zhang J, Li XQ, Peng HW, Hai L, Erst AS, Jabbour F, Ortiz RDC, Xia FC, Soltis PS, Soltis DE, Wang W. Evolutionary history of the Arctic flora. Nature Communications. 14: 4021. PMID 37463899 DOI: 10.1038/s41467-023-39555-6  0.577
2023 Liu L, Chen M, Folk RA, Wang M, Zhao T, Shang F, Soltis DE, Li P. Phylogenomic and syntenic data demonstrate complex evolutionary processes in early radiation of the rosids. Molecular Ecology Resources. PMID 37449554 DOI: 10.1111/1755-0998.13833  0.358
2023 Kang M, Chanderbali A, Lee S, Soltis DE, Soltis PS, Kim S. High-molecular-weight DNA extraction for long-read sequencing of plant genomes: An optimization of standard methods. Applications in Plant Sciences. 11: e11528. PMID 37342161 DOI: 10.1002/aps3.11528  0.58
2023 Jordon-Thaden IE, Spoelhof JP, Viccini LF, Combs J, Gomez F, Walker I, Soltis DE, Soltis PS. Phenotypic trait variation in the North American Tragopogon allopolyploid complex. American Journal of Botany. PMID 37210744 DOI: 10.1002/ajb2.16189  0.573
2023 Folk RA, Gaynor ML, Engle-Wrye NJ, O'Meara BC, Soltis PS, Soltis DE, Guralnick RP, Smith SA, Grady CJ, Okuyama Y. Identifying climatic drivers of hybridization with a new ancestral niche reconstruction method. Systematic Biology. PMID 37073863 DOI: 10.1093/sysbio/syad018  0.638
2023 Soltis DE, Smocovitis VB, Pham KK, Cortez MBS, Smith AL, Soltis PS. Rethinking the Ph.D. dissertation in botany: Widening the circle. American Journal of Botany. e16136. PMID 36916033 DOI: 10.1002/ajb2.16136  0.464
2023 Larson DA, Chanderbali AS, Maurin O, J P Goncalves D, Dick CW, Soltis DE, Soltis PS, Fritsch PW, Clarkson JJ, Grall A, M J Davies N, Larridon I, A B S Kikuchi I, Forest F, Baker WJ, et al. The phylogeny and global biogeography of Primulaceae based on high-throughput DNA sequence data. Molecular Phylogenetics and Evolution. 107702. PMID 36781032 DOI: 10.1016/j.ympev.2023.107702  0.631
2023 Stull GW, Pham KK, Soltis PS, Soltis DE. Deep reticulation: the long legacy of hybridization in vascular plant evolution. The Plant Journal : For Cell and Molecular Biology. PMID 36775995 DOI: 10.1111/tpj.16142  0.622
2023 Moein F, Jamzad Z, Rahiminejad M, Landis JB, Mirtadzadini M, Soltis DE, Soltis PS. Towards a global perspective for Salvia L.: Phylogeny, diversification and floral evolution. Journal of Evolutionary Biology. PMID 36759951 DOI: 10.1111/jeb.14149  0.629
2023 Shan S, Yang B, Hauser BA, Soltis PS, Soltis DE. Developing a CRISPR System in Nongenetic Model Polyploids. Methods in Molecular Biology (Clifton, N.J.). 2545: 475-490. PMID 36720829 DOI: 10.1007/978-1-0716-2561-3_25  0.629
2022 Lin HY, Sun M, Hao YJ, Li D, Gitzendanner MA, Fu CX, Soltis DE, Soltis PS, Zhao YP. Phylogenetic diversity of eastern Asia-eastern North America disjunct plants is mainly associated with divergence time. Plant Diversity. 45: 27-35. PMID 36876316 DOI: 10.1016/j.pld.2022.09.008  0.772
2022 Du ZY, Xiang QJ, Cheng J, Zhou W, Wang QF, Soltis DE, Soltis PS. An updated phylogeny, biogeography, and PhyloCode-based classification of Cornaceae based on three sets of genomic data. American Journal of Botany. PMID 36480351 DOI: 10.1002/ajb2.16116  0.697
2022 Yang T, Tedersoo L, Soltis PS, Soltis DE, Sun M, Ma Y, Ni Y, Liu X, Fu X, Shi Y, Lin HY, Zhao YP, Fu C, Dai CC, Gilbert JA, et al. Plant and fungal species interactions differ between aboveground and belowground habitats in mountain forests of eastern China. Science China. Life Sciences. PMID 36462107 DOI: 10.1007/s11427-022-2174-3  0.702
2022 Hodel RGJ, Soltis DE, Soltis PS. Hindcast-validated species distribution models reveal future vulnerabilities of mangroves and salt marsh species. Ecology and Evolution. 12: e9252. PMID 36188510 DOI: 10.1002/ece3.9252  0.577
2022 Marchant DB, Chen G, Cai S, Chen F, Schafran P, Jenkins J, Shu S, Plott C, Webber J, Lovell JT, He G, Sandor L, Williams M, Rajasekar S, Healey A, ... ... Soltis DE, et al. Dynamic genome evolution in a model fern. Nature Plants. PMID 36050461 DOI: 10.1038/s41477-022-01226-7  0.757
2022 Li XQ, Xiang XG, Jabbour F, Hagen O, Ortiz RDC, Soltis PS, Soltis DE, Wang W. Biotic colonization of subtropical East Asian caves through time. Proceedings of the National Academy of Sciences of the United States of America. 119: e2207199119. PMID 35969742 DOI: 10.1073/pnas.2207199119  0.573
2022 Liu Y, Wang S, Li L, Yang T, Dong S, Wei T, Wu S, Liu Y, Gong Y, Feng X, Ma J, Chang G, Huang J, Yang Y, Wang H, ... ... Soltis DE, et al. The Cycas genome and the early evolution of seed plants. Nature Plants. PMID 35437001 DOI: 10.1038/s41477-022-01129-7  0.645
2022 Chanderbali AS, Jin L, Xu Q, Zhang Y, Zhang J, Jian S, Carroll E, Sankoff D, Albert VA, Howarth DG, Soltis DE, Soltis PS. Buxus and Tetracentron genomes help resolve eudicot genome history. Nature Communications. 13: 643. PMID 35110570 DOI: 10.1038/s41467-022-28312-w  0.604
2022 Kress WJ, Soltis DE, Kersey PJ, Wegrzyn JL, Leebens-Mack JH, Gostel MR, Liu X, Soltis PS. Green plant genomes: What we know in an era of rapidly expanding opportunities. Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 35042803 DOI: 10.1073/pnas.2115640118  0.629
2022 Zhang Q, Zhao L, Folk RA, Zhao JL, Zamora NA, Yang SX, Soltis DE, Soltis PS, Gao LM, Peng H, Yu XQ. Phylotranscriptomics of Theaceae: generic level relationships, reticulation and whole-genome duplication. Annals of Botany. PMID 35037017 DOI: 10.1093/aob/mcac007  0.64
2022 Li L, Chen X, Fang D, Dong S, Guo X, Li N, Campos-Dominguez L, Wang W, Liu Y, Lang X, Peng Y, Tian D, Thomas DC, Mu W, Liu M, ... ... Soltis DE, et al. Genomes shed light on the evolution of Begonia, a mega-diverse genus. The New Phytologist. PMID 34997964 DOI: 10.1111/nph.17949  0.324
2021 Hu H, Ye J, Liu B, Mao L, Smith SA, Barrett RL, Soltis PS, Soltis DE, Chen Z, Lu L. Temporal and spatial comparisons of angiosperm diversity between eastern Asia and North America. National Science Review. 9: nwab199. PMID 35822065 DOI: 10.1093/nsr/nwab199  0.525
2021 Wang A, Melton AE, Soltis DE, Soltis PS. Potential distributional shifts in North America of allelopathic invasive plant species under climate change models. Plant Diversity. 44: 11-19. PMID 35281122 DOI: 10.1016/j.pld.2021.06.010  0.579
2021 Guo X, Fang D, Sahu SK, Yang S, Guang X, Folk R, Smith SA, Chanderbali AS, Chen S, Liu M, Yang T, Zhang S, Liu X, Xu X, Soltis PS, ... Soltis DE, et al. Chloranthus genome provides insights into the early diversification of angiosperms. Nature Communications. 12: 6930. PMID 34836973 DOI: 10.1038/s41467-021-26922-4  0.624
2021 Li HT, Luo Y, Gan L, Ma PF, Gao LM, Yang JB, Cai J, Gitzendanner MA, Fritsch PW, Zhang T, Jin JJ, Zeng CX, Wang H, Yu WB, Zhang R, ... ... Soltis DE, et al. Plastid phylogenomic insights into relationships of all flowering plant families. Bmc Biology. 19: 232. PMID 34711223 DOI: 10.1186/s12915-021-01166-2  0.798
2021 Qin L, Hu Y, Wang J, Wang X, Zhao R, Shan H, Li K, Xu P, Wu H, Yan X, Liu L, Yi X, Wanke S, Bowers JE, Leebens-Mack JH, ... ... Soltis DE, et al. Insights into angiosperm evolution, floral development and chemical biosynthesis from the Aristolochia fimbriata genome. Nature Plants. PMID 34475528 DOI: 10.1038/s41477-021-00990-2  0.63
2021 Hu H, Scheben A, Verpaalen B, Tirnaz S, Bayer PE, Hodel RGJ, Batley J, Soltis DE, Soltis PS, Edwards D. Amborella gene presence/absence variation is associated with abiotic stress responses that may contribute to environmental adaptation. The New Phytologist. PMID 34328223 DOI: 10.1111/nph.17658  0.641
2021 Stull GW, Qu XJ, Parins-Fukuchi C, Yang YY, Yang JB, Yang ZY, Hu Y, Ma H, Soltis PS, Soltis DE, Li DZ, Smith SA, Yi TS. Gene duplications and phylogenomic conflict underlie major pulses of phenotypic evolution in gymnosperms. Nature Plants. PMID 34282286 DOI: 10.1038/s41477-021-00964-4  0.668
2021 Spoelhof JP, Soltis DE, Soltis PS. Polyploidy and mutation in Arabidopsis. Evolution; International Journal of Organic Evolution. PMID 34251678 DOI: 10.1111/evo.14307  0.561
2021 Boatwright JL, Yeh CT, Hu HC, Susanna A, Soltis DE, Soltis PS, Schnable PS, Barbazuk WB. Trajectories of Homoeolog-Specific Expression in Allotetraploid Populations of Independent Origins. Frontiers in Plant Science. 12: 679047. PMID 34249049 DOI: 10.3389/fpls.2021.679047  0.61
2021 Kates HR, Doby JR, Siniscalchi CM, LaFrance R, Soltis DE, Soltis PS, Guralnick RP, Folk RA. The Effects of Herbarium Specimen Characteristics on Short-Read NGS Sequencing Success in Nearly 8000 Specimens: Old, Degraded Samples Have Lower DNA Yields but Consistent Sequencing Success. Frontiers in Plant Science. 12: 669064. PMID 34249041 DOI: 10.3389/fpls.2021.669064  0.565
2021 Van de Peer Y, Ashman TL, Soltis PS, Soltis DE. Erratum to: Polyploidy: an evolutionary and ecological force in stressful times. The Plant Cell. PMID 34131762 DOI: 10.1093/plcell/koab149  0.498
2021 Earl C, Belitz MW, Laffan SW, Barve V, Barve N, Soltis DE, Allen JM, Soltis PS, Mishler BD, Kawahara AY, Guralnick R. Spatial phylogenetics of butterflies in relation to environmental drivers and angiosperm diversity across North America. Iscience. 24: 102239. PMID 33997666 DOI: 10.1016/j.isci.2021.102239  0.61
2021 Mavrodiev EV, Dervinis C, Whitten WM, Gitzendanner MA, Kirst M, Kim S, Kinser TJ, Soltis PS, Soltis DE. A new, simple, highly scalable, and efficient protocol for genomic DNA extraction from diverse plant taxa. Applications in Plant Sciences. 9: e11413. PMID 33854847 DOI: 10.1002/aps3.11413  0.747
2021 Van de Peer Y, Ashman TL, Soltis PS, Soltis DE. Polyploidy: an evolutionary and ecological force in stressful times. The Plant Cell. 33: 11-26. PMID 33751096 DOI: 10.1093/plcell/koaa015  0.596
2021 Folk RA, Kates HR, LaFrance R, Soltis DE, Soltis PS, Guralnick RP. High-throughput methods for efficiently building massive phylogenies from natural history collections. Applications in Plant Sciences. 9: e11410. PMID 33680581 DOI: 10.1002/aps3.11410  0.608
2021 Daniell H, Jin S, Zhu XG, Gitzendanner MA, Soltis DE, Soltis PS. Green giant - a tiny chloroplast genome with mighty power to produce high-value proteins: history and phylogeny. Plant Biotechnology Journal. PMID 33484606 DOI: 10.1111/pbi.13556  0.771
2020 Spoelhof JP, Soltis DE, Soltis PS. Habitat Shape Affects Polyploid Establishment in a Spatial, Stochastic Model. Frontiers in Plant Science. 11: 592356. PMID 33304370 DOI: 10.3389/fpls.2020.592356  0.594
2020 Cai S, Huang Y, Chen F, Zhang X, Sessa E, Zhao C, Marchant DB, Xue D, Chen G, Dai F, Leebens-Mack JH, Zhang G, Shabala S, Christie JM, Blatt MR, ... ... Soltis DE, et al. Evolution of rapid blue-light response linked to explosive diversification of ferns in Angiosperm forests. The New Phytologist. PMID 33280113 DOI: 10.1111/nph.17135  0.562
2020 Melton AE, Chen S, Zhao Y, Fu C, Xiang QJ, Cheng S, Wong GK, Soltis PS, Soltis DE, Gitzendanner MA. Genetic insights into the evolution of genera with the eastern Asia-eastern North America floristic disjunction: a transcriptomics analysis. American Journal of Botany. PMID 33280088 DOI: 10.1002/ajb2.1579  0.775
2020 Folk RA, Siniscalchi CM, Soltis DE. Angiosperms at the edge: Extremity, diversity, and phylogeny. Plant, Cell & Environment. PMID 32926444 DOI: 10.1111/Pce.13887  0.419
2020 Hamilton JP, Godden GT, Lanier E, Bhat WW, Kinser TJ, Vaillancourt B, Wang H, Wood JC, Jiang J, Soltis PS, Soltis DE, Hamberger B, Buell CR. Generation of a chromosome-scale genome assembly of the insect-repellent terpenoid-producing Lamiaceae species, Callicarpa americana. Gigascience. 9. PMID 32893861 DOI: 10.1093/Gigascience/Giaa093  0.617
2020 Shan S, Boatwright JL, Liu X, Chanderbali AS, Fu C, Soltis PS, Soltis DE. Transcriptome Dynamics of the Inflorescence in Reciprocally Formed Allopolyploid (Asteraceae). Frontiers in Genetics. 11: 888. PMID 32849847 DOI: 10.3389/Fgene.2020.00888  0.633
2020 Fox DT, Soltis DE, Soltis PS, Ashman TL, Van de Peer Y. Polyploidy: A Biological Force From Cells to Ecosystems. Trends in Cell Biology. PMID 32646579 DOI: 10.1016/J.Tcb.2020.06.006  0.611
2020 Sun M, Folk RA, Gitzendanner MA, Soltis PS, Chen Z, Soltis DE, Guralnick RP. Recent accelerated diversification in rosids occurred outside the tropics. Nature Communications. 11: 3333. PMID 32620894 DOI: 10.1038/S41467-020-17116-5  0.753
2020 Sun M, Folk RA, Gitzendanner MA, Soltis PS, Chen Z, Soltis DE, Guralnick RP. Estimating rates and patterns of diversification with incomplete sampling: a case study in the rosids. American Journal of Botany. PMID 32519354 DOI: 10.1002/Ajb2.1479  0.767
2020 Jantzen JR, Amarasinghe P, Folk RA, Reginato M, Michelangeli FA, Soltis DE, Cellinese N, Soltis PS. A two-tier bioinformatic pipeline to develop probes for target capture of nuclear loci with applications in Melastomataceae. Applications in Plant Sciences. 8: e11345. PMID 32477841 DOI: 10.1002/Aps3.11345  0.634
2020 Lichman BR, Godden GT, Hamilton JP, Palmer L, Kamileen MO, Zhao D, Vaillancourt B, Wood JC, Sun M, Kinser TJ, Henry LK, Rodriguez-Lopez C, Dudareva N, Soltis DE, Soltis PS, et al. The evolutionary origins of the cat attractant nepetalactone in catnip. Science Advances. 6: eaba0721. PMID 32426505 DOI: 10.1126/Sciadv.Aba0721  0.688
2020 Stull GW, Soltis PS, Soltis DE, Gitzendanner MA, Smith SA. Nuclear phylogenomic analyses of asterids conflict with plastome trees and support novel relationships among major lineages. American Journal of Botany. PMID 32406108 DOI: 10.1002/Ajb2.1468  0.79
2020 Liu LX, Du YX, Folk RA, Wang SY, Soltis DE, Shang FD, Li P. Plastome Evolution in Saxifragaceae and Multiple Plastid Capture Events Involving and . Frontiers in Plant Science. 11: 361. PMID 32391025 DOI: 10.3389/Fpls.2020.00361  0.486
2020 Lopes JML, de Carvalho HH, Zorzatto C, Azevedo ALS, Machado MA, Salimena FRG, Grazul RM, Gitzendanner MA, Soltis DE, Soltis PS, Viccini LF. Genetic relationships and polyploid origins in the Lippia alba complex. American Journal of Botany. PMID 32115694 DOI: 10.1002/Ajb2.1443  0.773
2020 Shan S, Soltis PS, Soltis DE, Yang B. Considerations in adapting CRISPR/Cas9 in nongenetic model plant systems. Applications in Plant Sciences. 8: e11314. PMID 31993256 DOI: 10.1002/Aps3.11314  0.641
2020 Gaynor ML, Fu C, Gao L, Lu L, Soltis DE, Soltis PS. Biogeography and ecological niche evolution in Diapensiaceae inferred from phylogenetic analysis Journal of Systematics and Evolution. 58: 646-662. DOI: 10.1111/Jse.12646  0.659
2020 Mishler BD, Guralnick R, Soltis PS, Smith SA, Soltis DE, Barve N, Allen JM, Laffan SW. Spatial phylogenetics of the North American flora Journal of Systematics and Evolution. 58: 393-405. DOI: 10.1111/Jse.12590  0.563
2020 Lu L, Hu H, Peng D, Liu B, Ye J, Yang T, Li H, Sun M, Smith SA, Soltis PS, Soltis DE, Chen Z. Noise does not equal bias in assessing the evolutionary history of the angiosperm flora of China: A response to Qian (2019) Journal of Biogeography. DOI: 10.1111/Jbi.13947  0.547
2020 Valle N, Antonenko P, Soltis PS, Soltis DE, Folk RA, Guralnick RP, Oliverio JC, Difato TT, Xu Z, Cheng L. Informal multimedia biodiversity awareness event as a digital ecology for promoting culture of science Education and Information Technologies. 25: 3275-3297. DOI: 10.1007/S10639-020-10121-7  0.561
2019 Stubbs RL, Folk RA, Xiang CL, Chen S, Soltis DE, Cellinese N. A Phylogenomic Perspective on Evolution and Discordance in the Alpine-Arctic Plant Clade (Saxifragaceae). Frontiers in Plant Science. 10: 1773. PMID 32117341 DOI: 10.3389/Fpls.2019.01773  0.684
2019 Kattge J, Bönisch G, Díaz S, Lavorel S, Prentice IC, Leadley P, Tautenhahn S, Werner GDA, Aakala T, Abedi M, Acosta ATR, Adamidis GC, Adamson K, Aiba M, Albert CH, ... ... Soltis D, et al. TRY plant trait database - enhanced coverage and open access. Global Change Biology. PMID 31891233 DOI: 10.1111/Gcb.14904  0.736
2019 Wong GK, Soltis DE, Leebens-Mack J, Wickett NJ, Barker MS, de Peer YV, Graham SW, Melkonian M. Sequencing and Analyzing the Transcriptomes of a Thousand Species Across the Tree of Life for Green Plants. Annual Review of Plant Biology. PMID 31851546 DOI: 10.1146/Annurev-Arplant-042916-041040  0.717
2019 Marchant DB, Sessa EB, Wolf PG, Heo K, Barbazuk WB, Soltis PS, Soltis DE. The C-Fern (Ceratopteris richardii) genome: insights into plant genome evolution with the first partial homosporous fern genome assembly. Scientific Reports. 9: 18181. PMID 31796775 DOI: 10.1038/S41598-019-53968-8  0.657
2019 Godden GT, Kinser TJ, Soltis PS, Soltis DE. Phylotranscriptomic analyses reveal asymmetrical gene duplication dynamics and signatures of ancient polyploidy in mints. Genome Biology and Evolution. PMID 31687761 DOI: 10.1093/Gbe/Evz239  0.701
2019 Xue B, Guo X, Landis JB, Sun M, Tang CC, Soltis PS, Soltis DE, Saunders RMK. Accelerated diversification correlated with functional traits shapes extant diversity of the early divergent angiosperm family Annonaceae. Molecular Phylogenetics and Evolution. 106659. PMID 31639525 DOI: 10.1016/J.Ympev.2019.106659  0.673
2019 Jantzen JR, Whitten WM, Neubig KM, Majure LC, Soltis DE, Soltis PS. Effects of taxon sampling and tree reconstruction methods on phylodiversity metrics. Ecology and Evolution. 9: 9479-9499. PMID 31534670 DOI: 10.1002/Ece3.5425  0.63
2019 Dong Y, Chen S, Cheng S, Zhou W, Ma Q, Chen Z, Fu CX, Liu X, Zhao YP, Soltis PS, Wong GK, Soltis DE, Xiang J. Natural selection and repeated patterns of molecular evolution following allopatric divergence. Elife. 8. PMID 31373555 DOI: 10.7554/Elife.45199  0.788
2019 Li D, Trotta L, Marx HE, Allen JM, Sun M, Soltis DE, Soltis PS, Guralnick RP, Baiser B. For common community phylogenetic analyses, go ahead and use synthesis phylogenies. Ecology. e02788. PMID 31225900 DOI: 10.1002/Ecy.2788  0.64
2019 Folk RA, Stubbs RL, Mort ME, Cellinese N, Allen JM, Soltis PS, Soltis DE, Guralnick RP. Rates of niche and phenotype evolution lag behind diversification in a temperate radiation. Proceedings of the National Academy of Sciences of the United States of America. PMID 31085636 DOI: 10.1073/Pnas.1817999116  0.732
2019 Li HT, Yi TS, Gao LM, Ma PF, Zhang T, Yang JB, Gitzendanner MA, Fritsch PW, Cai J, Luo Y, Wang H, van der Bank M, Zhang SD, Wang QF, Wang J, ... ... Soltis DE, et al. Origin of angiosperms and the puzzle of the Jurassic gap. Nature Plants. PMID 31061536 DOI: 10.1038/S41477-019-0421-0  0.831
2019 Zhao C, Wang Y, Chan KX, Marchant DB, Franks PJ, Randall D, Tee EE, Chen G, Ramesh S, Phua SY, Zhang B, Hills A, Dai F, Xue D, Gilliham M, ... ... Soltis DE, et al. Evolution of chloroplast retrograde signaling facilitates green plant adaptation to land. Proceedings of the National Academy of Sciences of the United States of America. PMID 30804180 DOI: 10.1073/Pnas.1812092116  0.603
2019 Lin HY, Hao YJ, Li JH, Fu CX, Soltis PS, Soltis DE, Zhao YP. Phylogenomic conflict resulting from ancient introgression following species diversification in Stewartia s.l. (Theaceae). Molecular Phylogenetics and Evolution. PMID 30802596 DOI: 10.1016/J.Ympev.2019.02.018  0.771
2019 Visger CJ, Wong GK, Zhang Y, Soltis PS, Soltis DE. Divergent gene expression levels between diploid and autotetraploid Tolmiea relative to the total transcriptome, the cell, and biomass. American Journal of Botany. PMID 30779448 DOI: 10.1002/Ajb2.1239  0.593
2019 Yao G, Jin JJ, Li HT, Yang JB, Shiva Mandala V, Croley M, Mostow R, Douglas NA, Chase MW, Christenhusz MJM, Soltis DE, Soltis PS, Smith SA, Brockington SF, Moore MJ, et al. Plastid phylogenomic insights into the evolution of Caryophyllales. Molecular Phylogenetics and Evolution. PMID 30735725 DOI: 10.1016/J.Ympev.2018.12.023  0.816
2019 Zhao D, Hamilton JP, Bhat WW, Johnson SR, Godden GT, Kinser TJ, Boachon B, Dudareva N, Soltis DE, Soltis PS, Hamberger B, Buell CR. A chromosomal-scale genome assembly of Tectona grandis reveals the importance of tandem gene duplication and enables discovery of genes in natural product biosynthetic pathways. Gigascience. PMID 30698701 DOI: 10.1093/Gigascience/Giz005  0.643
2019 Soltis DE, Soltis PS. Nuclear genomes of two magnoliids. Nature Plants. 5: 6-7. PMID 30626927 DOI: 10.1038/S41477-018-0344-1  0.624
2019 Soltis DE, Kuzoff RK. DISCORDANCE BETWEEN NUCLEAR AND CHLOROPLAST PHYLOGENIES IN THE HEUCHERA GROUP (SAXIFRAGACEAE). Evolution; International Journal of Organic Evolution. 49: 727-742. PMID 28565145 DOI: 10.1111/J.1558-5646.1995.Tb02309.X  0.455
2019 Dong Y, Chen S, Cheng S, Zhou W, Ma Q, Chen Z, Fu C, Liu X, Zhao Y, Soltis PS, Wong GK, Soltis DE, Xiang Q. Author response: Natural selection and repeated patterns of molecular evolution following allopatric divergence Elife. DOI: 10.7554/Elife.45199.057  0.749
2019 Ghimire B, Suh Y, Soltis DE, Heo K. Phylogenetic relationships of Coreanomecon (Papaveraceae: Chelidonioideae) inferred from seed morphology and nrITS sequence data Nordic Journal of Botany. 37. DOI: 10.1111/Njb.02275  0.387
2019 Xiang C, Dong H, Landrein S, Zhao F, Yu W, Soltis DE, Soltis PS, Backlund A, Wang H, Li D, Peng H. Revisiting the phylogeny of Dipsacales: New insights from phylogenomic analyses of complete plastomic sequences Journal of Systematics and Evolution. 58: 103-117. DOI: 10.1111/Jse.12526  0.663
2019 Soltis PS, Folk RA, Soltis DE. Darwin review: angiosperm phylogeny and evolutionary radiations Proceedings of the Royal Society B: Biological Sciences. 286: 20190099. DOI: 10.1098/Rspb.2019.0099  0.646
2019 Blackburn DC, Giribet G, Soltis DE, Stanley EL. Predicting the Impact of Describing New Species on Phylogenetic Patterns Integrative Organismal Biology. 1. DOI: 10.1093/iob/obz028  0.319
2019 Payton AC, Naranjo AA, Judd W, Gitzendanner M, Soltis PS, Soltis DE. Population genetics, speciation, and hybridization in Dicerandra (Lamiaceae), a North American Coastal Plain endemic, and implications for conservation Conservation Genetics. 20: 531-543. DOI: 10.1007/S10592-019-01154-8  0.753
2018 Allen JM, Folk RA, Soltis PS, Soltis DE, Guralnick RP. Biodiversity synthesis across the green branches of the tree of life. Nature Plants. PMID 30598535 DOI: 10.1038/S41477-018-0322-7  0.615
2018 Allen JM, Germain-Aubrey CC, Barve N, Neubig KM, Majure LC, Laffan SW, Mishler BD, Owens HL, Smith SA, Whitten WM, Abbott JR, Soltis DE, Guralnick R, Soltis PS. Spatial Phylogenetics of Florida Vascular Plants: The Effects of Calibration and Uncertainty on Diversity Estimates. Iscience. 11: 57-70. PMID 30590251 DOI: 10.1016/J.Isci.2018.12.002  0.825
2018 Johnson MG, Pokorny L, Dodsworth S, Botigué LR, Cowan RS, Devault A, Eiserhardt WL, Epitawalage N, Forest F, Kim JT, Leebens-Mack JH, Leitch IJ, Maurin O, Soltis DE, Soltis PS, et al. A Universal Probe Set for Targeted Sequencing of 353 Nuclear Genes from Any Flowering Plant Designed Using k-medoids Clustering. Systematic Biology. PMID 30535394 DOI: 10.1093/Sysbio/Syy086  0.663
2018 Yang T, Tedersoo L, Soltis PS, Soltis DE, Gilbert JA, Sun M, Shi Y, Wang H, Li Y, Zhang J, Chen Z, Lin H, Zhao Y, Fu C, Chu H. Phylogenetic imprint of woody plants on the soil mycobiome in natural mountain forests of eastern China. The Isme Journal. PMID 30353037 DOI: 10.1038/S41396-018-0303-X  0.733
2018 Hodel RGJ, Knowles LL, McDaniel SF, Payton AC, Dunaway JF, Soltis PS, Soltis DE. Terrestrial species adapted to sea dispersal: differences in propagule dispersal of two Caribbean mangroves. Molecular Ecology. PMID 30308703 DOI: 10.1111/Mec.14894  0.663
2018 Wang Y, Jiang W, Ye W, Fu C, Gitzendanner MA, Soltis PS, Soltis DE, Qiu Y. Evolutionary insights from comparative transcriptome and transcriptome-wide coalescence analyses in Tetrastigma hemsleyanum. Bmc Plant Biology. 18: 208. PMID 30249188 DOI: 10.1186/S12870-018-1429-8  0.806
2018 Gaynor ML, Marchant DB, Soltis DE, Soltis PS. Climatic niche comparison among ploidal levels in the classic autopolyploid system, Galax urceolata. American Journal of Botany. PMID 30239980 DOI: 10.1002/Ajb2.1161  0.617
2018 Boatwright JL, McIntyre LM, Morse AM, Chen S, Yoo MJ, Koh J, Soltis PS, Soltis DE, Barbazuk WB. A Robust Methodology for Assessing Differential Homeolog Contributions to the Transcriptomes of Allopolyploids. Genetics. PMID 30213855 DOI: 10.1534/Genetics.118.301564  0.815
2018 Shan S, Mavrodiev EV, Li R, Zhang Z, Hauser BA, Soltis PS, Soltis DE, Yang B. Application of CRISPR/Cas9 to Tragopogon (Asteraceae), an evolutionary model for the study of polyploidy. Molecular Ecology Resources. PMID 30086204 DOI: 10.1111/1755-0998.12935  0.628
2018 Stubbs RL, Soltis DE, Cellinese N. The future of cold-adapted plants in changing climates: (Saxifragaceae) as a case study. Ecology and Evolution. 8: 7164-7177. PMID 30073075 DOI: 10.1002/Ece3.4242  0.614
2018 Folk RA, Visger CJ, Soltis PS, Soltis DE, Guralnick RP. Geographic Range Dynamics Drove Ancient Hybridization in a Lineage of Angiosperms. The American Naturalist. 192: 171-187. PMID 30016161 DOI: 10.1086/698120  0.645
2018 Landis JB, Bell CD, Hernandez M, Zenil-Ferguson R, McCarthy EW, Soltis DE, Soltis PS. Evolution of Floral Traits and Impact of Reproductive Mode on Diversification in the Phlox Family (Polemoniaceae). Molecular Phylogenetics and Evolution. PMID 29958983 DOI: 10.1016/J.Ympev.2018.06.035  0.667
2018 Hu GX, Takano A, Drew BT, Liu ED, Soltis DE, Soltis PS, Peng H, Xiang CL. Phylogeny and staminal evolution of Salvia (Lamiaceae, Nepetoideae) in East Asia. Annals of Botany. PMID 29945172 DOI: 10.1093/Aob/Mcy104  0.666
2018 Boachon B, Buell CR, Crisovan E, Dudareva N, Garcia N, Godden G, Henry L, Kamileen MO, Kates HR, Kilgore MB, Lichman BR, Mavrodiev EV, Newton L, Rodriguez-Lopez C, O'Connor SE, ... Soltis D, et al. Phylogenomic Mining of the Mints Reveals Multiple Mechanisms Contributing to the Evolution of Chemical Diversity in Lamiaceae. Molecular Plant. PMID 29920355 DOI: 10.1016/J.Molp.2018.06.002  0.659
2018 Landis JB, Soltis DE, Li Z, Marx HE, Barker MS, Tank DC, Soltis PS. Impact of whole-genome duplication events on diversification rates in angiosperms. American Journal of Botany. PMID 29719043 DOI: 10.1002/Ajb2.1060  0.812
2018 Soltis DE, Moore MJ, Sessa EB, Smith SA, Soltis PS. Using and navigating the plant tree of life. American Journal of Botany. PMID 29702724 DOI: 10.1002/Ajb2.1071  0.597
2018 Hodel RG, Chandler LM, Fahrenkrog AM, Kirst M, Gitzendanner MA, Soltis DE, Soltis PS. Linking genome signatures of selection and adaptation in non-model plants: exploring potential and limitations in the angiosperm Amborella. Current Opinion in Plant Biology. 42: 81-89. PMID 29694936 DOI: 10.1016/J.Pbi.2018.04.003  0.79
2018 Folk RA, Soltis PS, Soltis DE, Guralnick R. New prospects in the detection and comparative analysis of hybridization in the tree of life. American Journal of Botany. PMID 29683488 DOI: 10.1002/Ajb2.1018  0.649
2018 Folk RA, Sun M, Soltis PS, Smith SA, Soltis DE, Guralnick RP. Challenges of comprehensive taxon sampling in comparative biology: Wrestling with rosids. American Journal of Botany. PMID 29665035 DOI: 10.1002/Ajb2.1059  0.629
2018 Stull GW, Schori M, Soltis DE, Soltis PS. Character evolution and missing (morphological) data across Asteridae. American Journal of Botany. PMID 29656519 DOI: 10.1002/Ajb2.1050  0.656
2018 Liu L, Wang Y, He P, Li P, Lee J, Soltis DE, Fu C. Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming data. Bmc Genomics. 19: 235. PMID 29618324 DOI: 10.1186/S12864-018-4633-X  0.393
2018 Cheng S, Melkonian M, Smith SA, Brockington S, Archibald JM, Delaux PM, Li FW, Melkonian B, Mavrodiev EV, Sun W, Fu Y, Yang H, Soltis DE, Graham SW, Soltis PS, et al. 10KP: A phylodiverse genome sequencing plan. Gigascience. 7: 1-9. PMID 29618049 DOI: 10.1093/Gigascience/Giy013  0.8
2018 Gitzendanner MA, Soltis PS, Wong GK, Ruhfel BR, Soltis DE. Plastid phylogenomic analysis of green plants: A billion years of evolutionary history. American Journal of Botany. PMID 29603143 DOI: 10.1002/Ajb2.1048  0.79
2018 Stubbs RL, Folk RA, Xiang CL, Soltis DE, Cellinese N. Pseudo-parallel patterns of disjunctions in an Arctic-alpine plant lineage. Molecular Phylogenetics and Evolution. 123: 88-100. PMID 29496541 DOI: 10.1016/J.Ympev.2018.02.016  0.636
2018 Lu LM, Mao LF, Yang T, Ye JF, Liu B, Li HL, Sun M, Miller JT, Mathews S, Hu HH, Niu YT, Peng DX, Chen YH, Smith SA, Chen M, ... ... Soltis DE, et al. Evolutionary history of the angiosperm flora of China. Nature. 554: 234-238. PMID 29420476 DOI: 10.1038/Nature25485  0.671
2018 Soares ANR, Clivati D, de Vasconcelos Melo MF, Gitzendanner M, Soltis P, Soltis D, da Silva Júnior JF, da Silva Ledo A, da Silva AVC. Genetic Diversity of Accessions and First Generation Progeny of the Mangaba Genebank American Journal of Plant Sciences. 9: 1618-1629. DOI: 10.4236/Ajps.2018.98117  0.76
2018 Soltis DE, Soltis PS, Judd WS. Michael J. Donoghue ‐ Recipient of the 2017 Asa Gray Award Systematic Botany. 43: 4-6. DOI: 10.1600/036364418X697139  0.523
2018 Xiang C, Zhao F, Cantino PD, Drew BT, Li B, Liu E, Soltis DE, Soltis PS, Peng H. Electronic Supplement to: Molecular systematics of Caryopteris (Lamiaceae) and its allies with reference to the molecular phylogeny of subfamily Ajugoideae Taxon. DOI: 10.12705/672.7.S1  0.555
2018 Xiang C, Zhao F, Cantino PD, Drew BT, Li B, Liu E, Soltis DE, Soltis PS, Peng H. Molecular systematics of Caryopteris (Lamiaceae) and its allies with reference to the molecular phylogeny of subfamily Ajugoideae Taxon. 67: 376-394. DOI: 10.12705/672.7  0.567
2017 Spoelhof JP, Chester M, Rodriguez R, Geraci B, Heo K, Mavrodiev E, Soltis PS, Soltis DE. Karyotypic variation and pollen stainability in resynthesized allopolyploids Tragopogon miscellus and T. mirus. American Journal of Botany. 104: 1484-1492. PMID 29885228 DOI: 10.3732/Ajb.1700180  0.655
2017 Hodel RGJ, Chen S, Payton AC, McDaniel SF, Soltis P, Soltis DE. Adding loci improves phylogeographic resolution in red mangroves despite increased missing data: comparing microsatellites and RAD-Seq and investigating loci filtering. Scientific Reports. 7: 17598. PMID 29242627 DOI: 10.1038/S41598-017-16810-7  0.617
2017 Molgo IE, Soltis DE, Soltis PS. Cytogeography of Callisia section Cuthbertia (Commelinaceae). Comparative Cytogenetics. 11: 553-577. PMID 29114354 DOI: 10.3897/Compcytogen.V11I4.11984  0.602
2017 Levin DA, Soltis DE. Factors promoting polyploid persistence and diversification and limiting diploid speciation during the K-Pg interlude. Current Opinion in Plant Biology. 42: 1-7. PMID 29107221 DOI: 10.1016/J.Pbi.2017.09.010  0.362
2017 Yu XQ, Gao LM, Soltis DE, Soltis PS, Yang JB, Fang L, Yang SX, Li DZ. Insights into the historical assembly of East Asian subtropical evergreen broadleaved forests revealed by the temporal history of the tea family. The New Phytologist. 215: 1235-1248. PMID 28695680 DOI: 10.1111/Nph.14683  0.606
2017 Landis JB, Soltis DE, Soltis PS. Comparative transcriptomic analysis of the evolution and development of flower size in Saltugilia (Polemoniaceae). Bmc Genomics. 18: 475. PMID 28645249 DOI: 10.1186/S12864-017-3868-2  0.62
2017 García N, Folk RA, Meerow AW, Chamala S, Gitzendanner MA, Souza de Oliveira R, Soltis DE, Soltis PS. Deep reticulation and incomplete lineage sorting obscure the diploid phylogeny of rain-lilies and allies (Amaryllidaceae tribe Hippeastreae). Molecular Phylogenetics and Evolution. PMID 28390909 DOI: 10.1016/J.Ympev.2017.04.003  0.802
2017 Liu X, Mei W, Soltis PS, Soltis DE, Barbazuk WB. Detecting Alternatively Spliced Transcript Isoforms from Single-Molecule Long-Read Sequences without a Reference Genome. Molecular Ecology Resources. PMID 28316149 DOI: 10.1111/1755-0998.12670  0.648
2017 Kates HR, Soltis PS, Soltis DE. Evolutionary and domestication history of Cucurbita (pumpkin and squash) species inferred from 44 nuclear loci. Molecular Phylogenetics and Evolution. PMID 28288944 DOI: 10.1016/J.Ympev.2017.03.002  0.692
2017 Cai S, Chen G, Wang Y, Huang Y, Marchant B, Wang Y, Yang Q, Dai F, Hills A, Franks PJ, Nevo E, Soltis D, Soltis P, Sessa E, Wolf PG, et al. Evolutionary Conservation of ABA Signaling for Stomatal Closure in Ferns. Plant Physiology. PMID 28232585 DOI: 10.1104/Pp.16.01848  0.648
2017 Yu Y, Xiang Q, Manos PS, Soltis DE, Soltis PS, Song BH, Cheng S, Liu X, Wong G. Whole-genome duplication and molecular evolution in Cornus L. (Cornaceae) - Insights from transcriptome sequences. Plos One. 12: e0171361. PMID 28225773 DOI: 10.1371/Journal.Pone.0171361  0.704
2017 Zhang SD, Jin JJ, Chen SY, Chase MW, Soltis DE, Li HT, Yang JB, Li DZ, Yi TS. Diversification of Rosaceae since the Late Cretaceous based on plastid phylogenomics. The New Phytologist. PMID 28186635 DOI: 10.1111/Nph.14461  0.586
2017 Chanderbali AS, Berger BA, Howarth DG, Soltis DE, Soltis PS. Evolution of floral diversity: genomics, genes and gamma. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 372. PMID 27994132 DOI: 10.1098/Rstb.2015.0509  0.701
2017 Guignard MS, Leitch AR, Acquisti C, Eizaguirre C, Elser JJ, Hessen DO, Jeyasingh PD, Neiman M, Richardson AE, Soltis PS, Soltis DE, Stevens CJ, Trimmer M, Weider LJ, Woodward G, et al. Impacts of Nitrogen and Phosphorus: From Genomes to Natural Ecosystems and Agriculture Frontiers in Ecology and Evolution. 5. DOI: 10.3389/Fevo.2017.00070  0.598
2017 Soltis PS, Soltis DE. Phylogenetic analysis of large molecular data sets Boletin De La Sociedad Botanica De Mexico. 99-113. DOI: 10.17129/Botsci.1509  0.626
2017 Lacey EA, Hammond TT, Walsh RE, Bell KC, Edwards SV, Ellwood ER, Guralnick R, Ickert-Bond SM, Mast AR, McCormack JE, Monfils AK, Soltis PS, Soltis DE, Cook JA. Climate change, collections and the classroom: using big data to tackle big problems Evolution: Education and Outreach. 10. DOI: 10.1186/S12052-017-0065-3  0.589
2017 MAJURE LC, JUDD WS, SOLTIS PS, SOLTIS DE. Taxonomic revision of the Opuntia humifusa complex (Opuntieae: Cactaceae) of the eastern United States Phytotaxa. 290: 1. DOI: 10.11646/Phytotaxa.290.1.1  0.559
2017 Spoelhof JP, Soltis PS, Soltis DE. Pure polyploidy: Closing the gaps in autopolyploid research Journal of Systematics and Evolution. 55: 340-352. DOI: 10.1111/Jse.12253  0.631
2016 Soltis DE, Soltis PS. Mobilizing and integrating big data in studies of spatial and phylogenetic patterns of biodiversity. Plant Diversity. 38: 264-270. PMID 30159477 DOI: 10.1016/J.Pld.2016.12.001  0.6
2016 Bourque S, Jeandroz S, Grandperret V, Lehotai N, Aimé S, Soltis DE, Miles NW, Melkonian M, Deyholos MK, Leebens-Mack JH, Chase MW, Rothfels CJ, Stevenson DW, Graham SW, Wang X, et al. The Evolution of HD2 Proteins in Green Plants. Trends in Plant Science. PMID 27789157 DOI: 10.1016/J.Tplants.2016.10.001  0.475
2016 de Casas RR, Mort ME, Soltis DE. The influence of habitat on the evolution of plants: a case study across Saxifragales. Annals of Botany. PMID 27551029 DOI: 10.1093/Aob/Mcw160  0.4
2016 Fan D, Hu W, Li B, Morris AB, Zheng M, Soltis DE, Soltis PS, Zhang Z. Idiosyncratic responses of evergreen broad-leaved forest constituents in China to the late Quaternary climate changes. Scientific Reports. 6: 31044. PMID 27534981 DOI: 10.1038/Srep31044  0.602
2016 Visger CJ, Germain-Aubrey CC, Patel M, Sessa EB, Soltis PS, Soltis DE. Niche divergence between diploid and autotetraploid Tolmiea. American Journal of Botany. PMID 27507838 DOI: 10.3732/Ajb.1600130  0.813
2016 Blaine Marchant D, Soltis DE, Soltis PS. Patterns of abiotic niche shifts in allopolyploids relative to their progenitors. The New Phytologist. PMID 27399976 DOI: 10.1111/Nph.14069  0.65
2016 Hodel RG, Segovia-Salcedo MC, Landis JB, Crowl AA, Sun M, Liu X, Gitzendanner MA, Douglas NA, Germain-Aubrey CC, Chen S, Soltis DE, Soltis PS. The report of my death was an exaggeration: A review for researchers using microsatellites in the 21st century. Applications in Plant Sciences. 4. PMID 27347456 DOI: 10.3732/Apps.1600025  0.805
2016 Hodel RG, Gitzendanner MA, Germain-Aubrey CC, Liu X, Crowl AA, Sun M, Landis JB, Segovia-Salcedo MC, Douglas NA, Chen S, Soltis DE, Soltis PS. A new resource for the development of SSR markers: Millions of loci from a thousand plant transcriptomes. Applications in Plant Sciences. 4. PMID 27347455 DOI: 10.3732/Apps.1600024  0.801
2016 Soltis DE. Floral flexibility: Diversification of the flower. Nature Plants. 2: 15211. PMID 27250754 DOI: 10.1038/Nplants.2015.211  0.354
2016 Lane TS, Rempe CS, Davitt J, Staton ME, Peng Y, Soltis DE, Melkonian M, Deyholos M, Leebens-Mack JH, Chase M, Rothfels CJ, Stevenson D, Graham SW, Yu J, Liu T, et al. Diversity of ABC transporter genes across the plant kingdom and their potential utility in biotechnology. Bmc Biotechnology. 16: 47. PMID 27245738 DOI: 10.1186/S12896-016-0277-6  0.513
2016 Soltis DE, Visger CJ, Marchant DB, Soltis PS. Polyploidy: Pitfalls and paths to a paradigm. American Journal of Botany. PMID 27234228 DOI: 10.3732/Ajb.1500501  0.65
2016 Soltis PS, Soltis DE. Ancient WGD events as drivers of key innovations in angiosperms. Current Opinion in Plant Biology. 30: 159-165. PMID 27064530 DOI: 10.1016/J.Pbi.2016.03.015  0.696
2016 Hodel RG, de Souza Cortez MB, Soltis PS, Soltis DE. Comparative phylogeography of black mangroves (Avicennia germinans) and red mangroves (Rhizophora mangle) in Florida: Testing the maritime discontinuity in coastal plants. American Journal of Botany. PMID 27056925 DOI: 10.3732/Ajb.1500260  0.664
2016 Chanderbali AS, Berger BA, Howarth DG, Soltis PS, Soltis DE. Evolving Ideas on the Origin and Evolution of Flowers: New Perspectives in the Genomic Era. Genetics. 202: 1255-65. PMID 27053123 DOI: 10.1534/Genetics.115.182964  0.663
2016 Soltis DE, Misra BB, Shan S, Chen S, Soltis PS. Polyploidy and the proteome. Biochimica Et Biophysica Acta. PMID 26993527 DOI: 10.1016/J.Bbapap.2016.03.010  0.628
2016 Germain-Aubrey CC, Nelson C, Soltis DE, Soltis PS, Gitzendanner MA. Are microsatellite fragment lengths useful for population-level studies? The case of Polygala lewtonii (Polygalaceae). Applications in Plant Sciences. 4. PMID 26949579 DOI: 10.3732/Apps.1500115  0.787
2016 Chen YP, Drew BT, Li B, Soltis DE, Soltis PS, Xiang CL. Resolving the phylogenetic position of Ombrocharis (Lamiaceae), with reference to the molecular phylogeny of tribe Elsholtzieae Taxon. 65: 123-136. DOI: 10.12705/651.8  0.657
2016 Chen ZD, Yang T, Lin L, Lu LM, Li HL, Sun M, Liu B, Chen M, Niu YT, Ye JF, Cao ZY, Liu HM, Wang XM, Wang W, Zhang JB, ... ... Soltis DE, et al. Tree of life for the genera of Chinese vascular plants Journal of Systematics and Evolution. 54: 277-306. DOI: 10.1111/Jse.12219  0.675
2016 Chen ZD, Lu AM, Zhang SZ, Wang QF, Liu ZJ, Li DZ, Ma H, Li JH, Soltis DE, Soltis PS, Wen J, Kong HZ, Wang XQ, Wang YZ, Zhou SL, et al. The Tree of Life: China project Journal of Systematics and Evolution. 54: 273-276. DOI: 10.1111/Jse.12215  0.547
2016 Sun M, Naeem R, Su J, Cao Z, Burleigh JG, Soltis PS, Soltis DE, Chen Z. Phylogeny of theRosidae: A dense taxon sampling analysis Journal of Systematics and Evolution. 54: 363-391. DOI: 10.1111/Jse.12211  0.681
2016 Li HL, Wang W, Li RQ, Zhang JB, Sun M, Naeem R, Su JX, Xiang XG, Mortimer PE, Li DZ, Hyde KD, Xu JC, Soltis DE, Soltis PS, Li J, et al. Global versus Chinese perspectives on the phylogeny of the N-fixing clade Journal of Systematics and Evolution. 54: 392-399. DOI: 10.1111/Jse.12201  0.618
2016 Kou Y, Cheng S, Tian S, Li B, Fan D, Chen Y, Soltis DE, Soltis PS, Zhang Z. The antiquity of Cyclocarya paliurus (Juglandaceae) provides new insights into the evolution of relict plants in subtropical China since the late Early Miocene Journal of Biogeography. 43: 351-360. DOI: 10.1111/Jbi.12635  0.655
2016 Chase MW, Christenhusz MJM, Fay MF, Byng JW, Judd WS, Soltis DE, Mabberley DJ, Sennikov AN, Soltis PS, Stevens PF, Briggs B, Brockington S, Chautems A, Clark JC, Conran J, et al. An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV Botanical Journal of the Linnean Society. 181: 1-20. DOI: 10.1111/boj.12385  0.633
2015 Landis JB, O'Toole RD, Ventura KL, Gitzendanner MA, Oppenheimer DG, Soltis DE, Soltis PS. The Phenotypic and Genetic Underpinnings of Flower Size in Polemoniaceae. Frontiers in Plant Science. 6: 1144. PMID 26779209 DOI: 10.3389/Fpls.2015.01144  0.77
2015 Sun Y, Moore MJ, Zhang S, Soltis PS, Soltis DE, Zhao T, Meng A, Li X, Li J, Wang H. Phylogenomic and structural analyses of 18 complete plastomes across all families of early-diverging eudicots, including an angiosperm-wide analysis of IR gene content evolution. Molecular Phylogenetics and Evolution. PMID 26724406 DOI: 10.1016/J.Ympev.2015.12.006  0.662
2015 Matyášek R, Dobešová E, Húska D, Ježková I, Soltis PS, Soltis DE, Kovařík A. Interpopulation hybridization generates meiotically stable rDNA epigenetic variants in allotetraploid Tragopogon mirus. The Plant Journal : For Cell and Molecular Biology. PMID 26711705 DOI: 10.1111/Tpj.13110  0.619
2015 Soltis PS, Marchant DB, Van de Peer Y, Soltis DE. Polyploidy and genome evolution in plants. Current Opinion in Genetics & Development. 35: 119-125. PMID 26656231 DOI: 10.1016/J.Gde.2015.11.003  0.651
2015 Sehrish T, Symonds VV, Soltis DE, Soltis PS, Tate JA. Cytonuclear Coordination Is Not Immediate upon Allopolyploid Formation in Tragopogon miscellus (Asteraceae) Allopolyploids. Plos One. 10: e0144339. PMID 26646761 DOI: 10.1371/Journal.Pone.0144339  0.647
2015 Stull GW, Duno de Stefano R, Soltis DE, Soltis PS. Resolving basal lamiid phylogeny and the circumscription of Icacinaceae with a plastome-scale data set. American Journal of Botany. PMID 26507112 DOI: 10.3732/Ajb.1500298  0.652
2015 Hellinger R, Koehbach J, Soltis DE, Carpenter EJ, Wong GK, Gruber CW. Peptidomics of circular cysteine-rich plant peptides - Analysis of the diversity of cyclotides from Viola tricolor by transcriptome- and proteome-mining. Journal of Proteome Research. PMID 26399495 DOI: 10.1021/Acs.Jproteome.5B00681  0.309
2015 Hinchliff CE, Smith SA, Allman JF, Burleigh JG, Chaudhary R, Coghill LM, Crandall KA, Deng J, Drew BT, Gazis R, Gude K, Hibbett DS, Katz LA, Laughinghouse HD, McTavish EJ, ... ... Soltis DE, et al. Synthesis of phylogeny and taxonomy into a comprehensive tree of life. Proceedings of the National Academy of Sciences of the United States of America. PMID 26385966 DOI: 10.1073/Pnas.1423041112  0.379
2015 Li HL, Wang W, Mortimer PE, Li RQ, Li DZ, Hyde KD, Xu JC, Soltis DE, Chen ZD. Large-scale phylogenetic analyses reveal multiple gains of actinorhizal nitrogen-fixing symbioses in angiosperms associated with climate change. Scientific Reports. 5: 14023. PMID 26354898 DOI: 10.1038/Srep14023  0.419
2015 Wolf PG, Sessa EB, Marchant DB, Li FW, Rothfels CJ, Sigel EM, Gitzendanner MA, Visger CJ, Banks JA, Soltis DE, Soltis PS, Pryer KM, Der JP. An Exploration into Fern Genome Space. Genome Biology and Evolution. 7: 2533-44. PMID 26311176 DOI: 10.1093/Gbe/Evv163  0.787
2015 Rothfels CJ, Li FW, Sigel EM, Huiet L, Larsson A, Burge DO, Ruhsam M, Deyholos M, Soltis DE, Stewart CN, Shaw SW, Pokorny L, Chen T, dePamphilis C, DeGironimo L, et al. The evolutionary history of ferns inferred from 25 low-copy nuclear genes. American Journal of Botany. 102: 1089-107. PMID 26199366 DOI: 10.3732/Ajb.1500089  0.364
2015 Matthews A, Emelianova K, Hatimy AA, Chester M, Pellicer J, Ahmad KS, Guignard MS, Rouhan G, Soltis DE, Soltis PS, Leitch IJ, Leitch AR, Mavrodiev EV, Buggs RJ. 250 years of hybridization between two biennial herb species without speciation. Aob Plants. 7. PMID 26187604 DOI: 10.1093/Aobpla/Plv081  0.648
2015 Servick S, Visger CJ, Gitzendanner MA, Soltis PS, Soltis DE. Population genetic variation, geographic structure, and multiple origins of autopolyploidy in Galax urceolata. American Journal of Botany. 102: 973-82. PMID 26101421 DOI: 10.3732/Ajb.1400554  0.753
2015 Tank DC, Eastman JM, Pennell MW, Soltis PS, Soltis DE, Hinchliff CE, Brown JW, Sessa EB, Harmon LJ. Nested radiations and the pulse of angiosperm diversification: increased diversification rates often follow whole genome duplications. The New Phytologist. 207: 454-67. PMID 26053261 DOI: 10.1111/Nph.13491  0.77
2015 Jordon-Thaden IE, Chanderbali AS, Gitzendanner MA, Soltis DE. Modified CTAB and TRIzol protocols improve RNA extraction from chemically complex Embryophyta. Applications in Plant Sciences. 3. PMID 25995975 DOI: 10.3732/Apps.1400105  0.65
2015 Zanne AE, Tank DC, Cornwell WK, Eastman JM, Smith SA, FitzJohn RG, McGlinn DJ, O'Meara BC, Moles AT, Reich PB, Royer DL, Soltis DE, Stevens PF, Westoby M, Wright IJ, et al. Zanne et al. reply. Nature. 521: E6-7. PMID 25993971 DOI: 10.1038/Nature14394  0.696
2015 Zanne AE, Tank DC, Cornwell WK, Eastman JM, Smith SA, FitzJohn RG, McGlinn DJ, O'Meara BC, Moles AT, Reich PB, Royer DL, Soltis DE, Stevens PF, Westoby M, Wright IJ, et al. Corrigendum: Three keys to the radiation of angiosperms into freezing environments. Nature. 521: 380. PMID 25993966 DOI: 10.1038/Nature14371  0.709
2015 Chamala S, García N, Godden GT, Krishnakumar V, Jordon-Thaden IE, De Smet R, Barbazuk WB, Soltis DE, Soltis PS. MarkerMiner 1.0: A new application for phylogenetic marker development using angiosperm transcriptomes. Applications in Plant Sciences. 3. PMID 25909041 DOI: 10.3732/Apps.1400115  0.64
2015 Landis JB, Ventura KL, Soltis DE, Soltis PS, Oppenheimer DG. Optical sectioning and 3D reconstructions as an alternative to scanning electron microscopy for analysis of cell shape. Applications in Plant Sciences. 3. PMID 25909040 DOI: 10.3732/Apps.1400112  0.556
2015 Chanderbali AS, He F, Soltis PS, Soltis DE. Out of the Water: Origin and Diversification of the LBD Gene Family. Molecular Biology and Evolution. PMID 25839188 DOI: 10.1093/Molbev/Msv080  0.648
2015 Yang Y, Moore MJ, Brockington SF, Soltis DE, Wong GK, Carpenter EJ, Zhang Y, Chen L, Yan Z, Xie Y, Sage RF, Covshoff S, Hibberd JM, Nelson MN, Smith SA. Dissecting Molecular Evolution in the Highly Diverse Plant Clade Caryophyllales Using Transcriptome Sequencing. Molecular Biology and Evolution. 32: 2001-14. PMID 25837578 DOI: 10.1093/Molbev/Msv081  0.757
2015 Tian S, Lei SQ, Hu W, Deng LL, Li B, Meng QL, Soltis DE, Soltis PS, Fan DM, Zhang ZY. Repeated range expansions and inter-/postglacial recolonization routes of Sargentodoxa cuneata (Oliv.) Rehd. et Wils. (Lardizabalaceae) in subtropical China revealed by chloroplast phylogeography. Molecular Phylogenetics and Evolution. 85: 238-46. PMID 25732070 DOI: 10.1016/J.Ympev.2015.02.016  0.655
2015 Mavrodiev EV, Chester M, Suárez-Santiago VN, Visger CJ, Rodriguez R, Susanna A, Baldini RM, Soltis PS, Soltis DE. Multiple origins and chromosomal novelty in the allotetraploid Tragopogon castellanus (Asteraceae). The New Phytologist. 206: 1172-83. PMID 25557021 DOI: 10.1111/Nph.13227  0.607
2015 Dobešová E, Malinská H, Matyášek R, Leitch AR, Soltis DE, Soltis PS, Kova?ík A. Silenced rRNA genes are activated and substitute for partially eliminated active homeologs in the recently formed allotetraploid, Tragopogon mirus (Asteraceae). Heredity. 114: 356-65. PMID 25537492 DOI: 10.1038/Hdy.2014.111  0.649
2015 Deng JB, Drew BT, Mavrodiev EV, Gitzendanner MA, Soltis PS, Soltis DE. Phylogeny, divergence times, and historical biogeography of the angiosperm family Saxifragaceae. Molecular Phylogenetics and Evolution. 83: 86-98. PMID 25479063 DOI: 10.1016/J.Ympev.2014.11.011  0.798
2015 Sun M, Soltis DE, Soltis PS, Zhu X, Burleigh JG, Chen Z. Deep phylogenetic incongruence in the angiosperm clade Rosidae. Molecular Phylogenetics and Evolution. 83: 156-66. PMID 25463749 DOI: 10.1016/J.Ympev.2014.11.003  0.667
2015 Chester M, Riley RK, Soltis PS, Soltis DE. Patterns of chromosomal variation in natural populations of the neoallotetraploid Tragopogon mirus (Asteraceae). Heredity. 114: 309-17. PMID 25370212 DOI: 10.1038/Hdy.2014.101  0.589
2014 Matasci N, Hung LH, Yan Z, Carpenter EJ, Wickett NJ, Mirarab S, Nguyen N, Warnow T, Ayyampalayam S, Barker M, Burleigh JG, Gitzendanner MA, Wafula E, Der JP, dePamphilis CW, ... ... Soltis DE, et al. Data access for the 1,000 Plants (1KP) project. Gigascience. 3: 17. PMID 25625010 DOI: 10.1186/2047-217X-3-17  0.814
2014 Yoo MJ, Liu X, Pires JC, Soltis PS, Soltis DE. Nonadditive gene expression in polyploids. Annual Review of Genetics. 48: 485-517. PMID 25421600 DOI: 10.1146/Annurev-Genet-120213-092159  0.762
2014 Vergara R, Gitzendanner MA, Soltis DE, Soltis PS. Population genetic structure, genetic diversity, and natural history of the South American species of Nothofagus subgenus Lophozonia (Nothofagaceae) inferred from nuclear microsatellite data. Ecology and Evolution. 4: 2450-71. PMID 25360279 DOI: 10.1002/Ece3.1108  0.769
2014 Wickett NJ, Mirarab S, Nguyen N, Warnow T, Carpenter E, Matasci N, Ayyampalayam S, Barker MS, Burleigh JG, Gitzendanner MA, Ruhfel BR, Wafula E, Der JP, Graham SW, Mathews S, ... ... Soltis DE, et al. Phylotranscriptomic analysis of the origin and early diversification of land plants. Proceedings of the National Academy of Sciences of the United States of America. 111: E4859-68. PMID 25355905 DOI: 10.1073/Pnas.1323926111  0.836
2014 Sessa EB, Banks JA, Barker MS, Der JP, Duffy AM, Graham SW, Hasebe M, Langdale J, Li FW, Marchant DB, Pryer KM, Rothfels CJ, Roux SJ, Salmi ML, Sigel EM, ... Soltis DE, et al. Between two fern genomes. Gigascience. 3: 15. PMID 25324969 DOI: 10.1186/2047-217X-3-15  0.765
2014 Sehrish T, Symonds VV, Soltis DE, Soltis PS, Tate JA. Gene silencing via DNA methylation in naturally occurring Tragopogon miscellus (Asteraceae) allopolyploids. Bmc Genomics. 15: 701. PMID 25145399 DOI: 10.1186/1471-2164-15-701  0.629
2014 Straub SC, Moore MJ, Soltis PS, Soltis DE, Liston A, Livshultz T. Phylogenetic signal detection from an ancient rapid radiation: Effects of noise reduction, long-branch attraction, and model selection in crown clade Apocynaceae. Molecular Phylogenetics and Evolution. 80: 169-85. PMID 25109653 DOI: 10.1016/J.Ympev.2014.07.020  0.652
2014 Soltis DE, Visger CJ, Soltis PS. The polyploidy revolution then…and now: Stebbins revisited. American Journal of Botany. 101: 1057-1078. PMID 25049267 DOI: 10.3732/Ajb.1400178  0.63
2014 Buggs RJ, Wendel JF, Doyle JJ, Soltis DE, Soltis PS, Coate JE. The legacy of diploid progenitors in allopolyploid gene expression patterns. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 369. PMID 24958927 DOI: 10.1098/Rstb.2013.0354  0.656
2014 Soltis PS, Liu X, Marchant DB, Visger CJ, Soltis DE. Polyploidy and novelty: Gottlieb's legacy. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 369. PMID 24958924 DOI: 10.1098/Rstb.2013.0351  0.645
2014 Crawford DJ, Doyle JJ, Soltis DE, Soltis PS, Wendel JF. Contemporary and future studies in plant speciation, morphological/floral evolution and polyploidy: honouring the scientific contributions of Leslie D. Gottlieb to plant evolutionary biology. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 369. PMID 24958916 DOI: 10.1098/Rstb.2013.0341  0.62
2014 Melzer R, Härter A, Rümpler F, Kim S, Soltis PS, Soltis DE, Theißen G. DEF- and GLO-like proteins may have lost most of their interaction partners during angiosperm evolution. Annals of Botany. 114: 1431-43. PMID 24902716 DOI: 10.1093/Aob/Mcu094  0.624
2014 Soltis DE, Segovia-Salcedo MC, Jordon-Thaden I, Majure L, Miles NM, Mavrodiev EV, Mei W, Cortez MB, Soltis PS, Gitzendanner MA. Are polyploids really evolutionary dead-ends (again)? A critical reappraisal of Mayrose et al. (). The New Phytologist. 202: 1105-17. PMID 24754325 DOI: 10.1111/Nph.12756  0.709
2014 Li FW, Villarreal JC, Kelly S, Rothfels CJ, Melkonian M, Frangedakis E, Ruhsam M, Sigel EM, Der JP, Pittermann J, Burge DO, Pokorny L, Larsson A, Chen T, Weststrand S, ... ... Soltis DE, et al. Horizontal transfer of an adaptive chimeric photoreceptor from bryophytes to ferns. Proceedings of the National Academy of Sciences of the United States of America. 111: 6672-7. PMID 24733898 DOI: 10.1073/Pnas.1319929111  0.417
2014 Ruhfel BR, Gitzendanner MA, Soltis PS, Soltis DE, Burleigh JG. From algae to angiosperms-inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes. Bmc Evolutionary Biology. 14: 23. PMID 24533922 DOI: 10.1186/1471-2148-14-23  0.812
2014 Soltis PS, Soltis DE. Flower diversity and angiosperm diversification. Methods in Molecular Biology (Clifton, N.J.). 1110: 85-102. PMID 24395253 DOI: 10.1007/978-1-4614-9408-9_4  0.681
2014 Drew BT, Ruhfel BR, Smith SA, Moore MJ, Briggs BG, Gitzendanner MA, Soltis PS, Soltis DE. Another look at the root of the angiosperms reveals a familiar tale. Systematic Biology. 63: 368-82. PMID 24391149 DOI: 10.1093/Sysbio/Syt108  0.77
2014 Zanne AE, Tank DC, Cornwell WK, Eastman JM, Smith SA, FitzJohn RG, McGlinn DJ, O'Meara BC, Moles AT, Reich PB, Royer DL, Soltis DE, Stevens PF, Westoby M, Wright IJ, et al. Three keys to the radiation of angiosperms into freezing environments. Nature. 506: 89-92. PMID 24362564 DOI: 10.1038/Nature12872  0.775
2014 García N, Meerow AW, Soltis DE, Soltis PS. Testing deep reticulate evolution in amaryllidaceae tribe hippeastreae (asparagales) with its and chloroplast sequence data Systematic Botany. 39: 75-89. DOI: 10.1600/036364414X678099  0.656
2014 Cook JA, Edwards SV, Lacey EA, Guralnick RP, Soltis PS, Soltis DE, Welch CK, Bell KC, Galbreath KE, Himes C, Allen JM, Heath TA, Carnaval AC, Cooper KL, Liu M, et al. Natural history collections as emerging resources for innovative education Bioscience. 64: 725-734. DOI: 10.1093/Biosci/Biu096  0.556
2014 Maia VH, Gitzendanner MA, Soltis PS, Wong GKS, Soltis DE. Angiosperm phylogeny based on 18S/26S rDNA sequence data: Constructing a large data set using next-generation sequence data International Journal of Plant Sciences. 175: 613-650. DOI: 10.1086/676675  0.786
2014 Germain-Aubrey CC, Soltis PS, Neubig KM, Thurston T, Soltis DE, Gitzendanner MA. Using comparative biogeography to retrace the origins of an ecosystem: The case of four plants endemic to the central Florida scrub International Journal of Plant Sciences. 175: 418-431. DOI: 10.1086/675571  0.822
2014 Zanne AE, Tank DC, Cornwell WK, Eastman JM, Smith SA, FitzJohn RG, McGlinn DJ, O’Meara BC, Moles AT, Reich PB, Royer DL, Soltis DE, Stevens PF, Westoby M, Wright IJ, et al. Erratum: Corrigendum: Three keys to the radiation of angiosperms into freezing environments Nature. 514: 394-394. DOI: 10.1038/Nature13842  0.707
2014 Majure LC, Soltis DE, Soltis PS, Judd WS. A case of mistaken identity, Opuntia abjecta, long-lost in synonymy under the Caribbean species, O. triacantha, and a reassessment of the enigmatic O. cubensis Brittonia. 66: 118-130. DOI: 10.1007/S12228-013-9307-Z  0.562
2013 Stull GW, Moore MJ, Mandala VS, Douglas NA, Kates HR, Qi X, Brockington SF, Soltis PS, Soltis DE, Gitzendanner MA. A targeted enrichment strategy for massively parallel sequencing of angiosperm plastid genomes. Applications in Plant Sciences. 1. PMID 25202518 DOI: 10.3732/Apps.1200497  0.808
2013 Chamala S, Chanderbali AS, Der JP, Lan T, Walts B, Albert VA, dePamphilis CW, Leebens-Mack J, Rounsley S, Schuster SC, Wing RA, Xiao N, Moore R, Soltis PS, Soltis DE, et al. Assembly and validation of the genome of the nonmodel basal angiosperm Amborella. Science (New York, N.Y.). 342: 1516-7. PMID 24357320 DOI: 10.1126/Science.1241130  0.653
2013 Lipman MJ, Chester M, Soltis PS, Soltis DE. Natural hybrids between Tragopogon mirus and T. miscellus (Asteraceae): a new perspective on karyotypic changes following hybridization at the polyploid level. American Journal of Botany. 100: 2016-22. PMID 24088339 DOI: 10.3732/Ajb.1300036  0.597
2013 Drew BT, Gazis R, Cabezas P, Swithers KS, Deng J, Rodriguez R, Katz LA, Crandall KA, Hibbett DS, Soltis DE. Lost branches on the tree of life. Plos Biology. 11: e1001636. PMID 24019756 DOI: 10.1371/Journal.Pbio.1001636  0.352
2013 Qi X, Chanderbali AS, Wong GK, Soltis DE, Soltis PS. Phylogeny and evolutionary history of glycogen synthase kinase 3/SHAGGY-like kinase genes in land plants. Bmc Evolutionary Biology. 13: 143. PMID 23834366 DOI: 10.1186/1471-2148-13-143  0.755
2013 Soltis PS, Soltis DE. A conifer genome spruces up plant phylogenomics. Genome Biology. 14: 122. PMID 23805854 DOI: 10.1186/Gb-2013-14-6-122  0.642
2013 McInnes L, Jones FA, Orme CD, Sobkowiak B, Barraclough TG, Chase MW, Govaerts R, Soltis DE, Soltis PS, Savolainen V. Do global diversity patterns of vertebrates reflect those of monocots? Plos One. 8: e56979. PMID 23658679 DOI: 10.1371/Journal.Pone.0056979  0.729
2013 Soltis DE, Mort ME, Latvis M, Mavrodiev EV, O'Meara BC, Soltis PS, Burleigh JG, Rubio de Casas R. Phylogenetic relationships and character evolution analysis of Saxifragales using a supermatrix approach. American Journal of Botany. 100: 916-29. PMID 23629845 DOI: 10.3732/Ajb.1300044  0.826
2013 Sun YX, Moore MJ, Meng AP, Soltis PS, Soltis DE, Li JQ, Wang HC. Complete plastid genome sequencing of Trochodendraceae reveals a significant expansion of the inverted repeat and suggests a Paleogene divergence between the two extant species. Plos One. 8: e60429. PMID 23577110 DOI: 10.1371/Journal.Pone.0060429  0.717
2013 Chester M, Lipman MJ, Gallagher JP, Soltis PS, Soltis DE. An assessment of karyotype restructuring in the neoallotetraploid Tragopogon miscellus (Asteraceae). Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 21: 75-85. PMID 23430325 DOI: 10.1007/S10577-013-9339-Y  0.618
2013 Ornelas JF, Sosa V, Soltis DE, Daza JM, González C, Soltis PS, Gutiérrez-Rodríguez C, de los Monteros AE, Castoe TA, Bell C, Ruiz-Sanchez E. Comparative phylogeographic analyses illustrate the complex evolutionary history of threatened cloud forests of northern Mesoamerica. Plos One. 8: e56283. PMID 23409165 DOI: 10.1371/Journal.Pone.0056283  0.648
2013 Arakaki M, Speranza P, Soltis PS, Soltis DE. Genetic variability of an unusual apomictic triploid cactus--Haageocereus tenuis Ritter--from the Coast of Central Peru. The Journal of Heredity. 104: 127-33. PMID 23028024 DOI: 10.1093/Jhered/Ess072  0.643
2013 Majure LC, Puente R, Griffith MP, Soltis DE, Judd WS. Opuntia lilae, another Tacinga hidden in Opuntia s.l. (Cactaceae) Systematic Botany. 38: 444-450. DOI: 10.1600/036364413X666688  0.412
2013 Soltis DE, Gitzendanner MA, Stull G, Chester M, Chanderbali A, Jordon-Thaden I, Chamala S, Soltis PS, Schnable PS, Brad Barbazuk W. The potential of genomics in plant systematics Taxon. 62: 886-898. DOI: 10.12705/625.13  0.805
2013 DePamphilis CW, Palmer JD, Rounsley S, Sankoff D, Schuster SC, Ammiraju JSS, Barbazuk WB, Chamala S, Chanderbali AS, Determann R, Hong M, Ralph P, Talag J, Tomsho L, Walts B, ... ... Soltis DE, et al. The Amborella genome and the evolution of flowering plants Science. 342. DOI: 10.1126/science.1241089  0.6
2013 Kim S, Soltis PS, Soltis DE. AGL6-like MADS-box genes are sister to AGL2-like MADS-box genes Journal of Plant Biology. 56: 315-325. DOI: 10.1007/S12374-013-0147-X  0.617
2013 Mavrodiev EV, Krahulec F, Soltis DE, Soltis PS. A cryptic taxon rather than a hybrid species of Tragopogon (Asteraceae) from the Czech Republic Kew Bulletin. 68: 133-141. DOI: 10.1007/S12225-012-9431-Z  0.617
2013 Soltis DE, Buggs RJA, Barbazuk WB, Chamala S, Chester M, Gallagher JP, Schnable PS, Soltis PS. The early stages of polyploidy: Rapid and repeated evolution in Tragopogon Polyploidy and Genome Evolution. 271-292. DOI: 10.1007/978-3-642-31442-1_14  0.507
2013 Soltis PS, Soltis DE. Preface Polyploidy and Genome Evolution. v-vi. DOI: 10.1007/978-3-642-31442-1  0.46
2012 Majure LC, Judd WS, Soltis PS, Soltis DE. Cytogeography of the Humifusa clade of Opuntia s.s. Mill. 1754 (Cactaceae, Opuntioideae, Opuntieae): correlations with pleistocene refugia and morphological traits in a polyploid complex. Comparative Cytogenetics. 6: 53-77. PMID 24260652 DOI: 10.3897/Compcytogen.V6I1.2523  0.641
2012 Johnson MT, Carpenter EJ, Tian Z, Bruskiewich R, Burris JN, Carrigan CT, Chase MW, Clarke ND, Covshoff S, Depamphilis CW, Edger PP, Goh F, Graham S, Greiner S, Hibberd JM, ... ... Soltis D, et al. Evaluating methods for isolating total RNA and predicting the success of sequencing phylogenetically diverse plant transcriptomes. Plos One. 7: e50226. PMID 23185583 DOI: 10.1371/Journal.Pone.0050226  0.681
2012 Bell CD, Mavrodiev EV, Soltis PS, Calaminus AK, Albach DC, Cellinese N, Garcia-Jacas N, Soltis DE. Rapid diversification of Tragopogon and ecological associates in Eurasia. Journal of Evolutionary Biology. 25: 2470-80. PMID 23163328 DOI: 10.1111/J.1420-9101.2012.02616.X  0.762
2012 Koh J, Chen S, Zhu N, Yu F, Soltis PS, Soltis DE. Comparative proteomics of the recently and recurrently formed natural allopolyploid Tragopogon mirus (Asteraceae) and its parents. The New Phytologist. 196: 292-305. PMID 22861377 DOI: 10.1111/J.1469-8137.2012.04251.X  0.721
2012 Xiang CL, Gitzendanner MA, Soltis DE, Peng H, Lei LG. Phylogenetic placement of the enigmatic and critically endangered genus Saniculiphyllum (Saxifragaceae) inferred from combined analysis of plastid and nuclear DNA sequences. Molecular Phylogenetics and Evolution. 64: 357-67. PMID 22548837 DOI: 10.1016/J.Ympev.2012.04.010  0.72
2012 Wang W, Ortiz Rdel C, Jacques FM, Xiang XG, Li HL, Lin L, Li RQ, Liu Y, Soltis PS, Soltis DE, Chen ZD. Menispermaceae and the diversification of tropical rainforests near the Cretaceous-Paleogene boundary. The New Phytologist. 195: 470-8. PMID 22548458 DOI: 10.1111/J.1469-8137.2012.04158.X  0.604
2012 Chen S, Xing Y, Su T, Zhou Z, Dilcher ED, Soltis DE. Phylogeographic analysis reveals significant spatial genetic structure of Incarvillea sinensis as a product of mountain building. Bmc Plant Biology. 12: 58. PMID 22546007 DOI: 10.1186/1471-2229-12-58  0.404
2012 Majure LC, Puente R, Griffith MP, Judd WS, Soltis PS, Soltis DE. Phylogeny of Opuntia s.s. (Cactaceae): clade delineation, geographic origins, and reticulate evolution. American Journal of Botany. 99: 847-64. PMID 22539520 DOI: 10.3732/Ajb.1100375  0.63
2012 Jiao Y, Leebens-Mack J, Ayyampalayam S, Bowers JE, McKain MR, McNeal J, Rolf M, Ruzicka DR, Wafula E, Wickett NJ, Wu X, Zhang Y, Wang J, Zhang Y, Carpenter EJ, ... ... Soltis DE, et al. A genome triplication associated with early diversification of the core eudicots. Genome Biology. 13: R3. PMID 22280555 DOI: 10.1186/Gb-2012-13-1-R3  0.602
2012 Buggs RJ, Renny-Byfield S, Chester M, Jordon-Thaden IE, Viccini LF, Chamala S, Leitch AR, Schnable PS, Barbazuk WB, Soltis PS, Soltis DE. Next-generation sequencing and genome evolution in allopolyploids. American Journal of Botany. 99: 372-82. PMID 22268220 DOI: 10.3732/Ajb.1100395  0.685
2012 Buggs RJ, Chamala S, Wu W, Tate JA, Schnable PS, Soltis DE, Soltis PS, Barbazuk WB. Rapid, repeated, and clustered loss of duplicate genes in allopolyploid plant populations of independent origin. Current Biology : Cb. 22: 248-52. PMID 22264605 DOI: 10.1016/J.Cub.2011.12.027  0.665
2012 Chester M, Gallagher JP, Symonds VV, Cruz da Silva AV, Mavrodiev EV, Leitch AR, Soltis PS, Soltis DE. Extensive chromosomal variation in a recently formed natural allopolyploid species, Tragopogon miscellus (Asteraceae). Proceedings of the National Academy of Sciences of the United States of America. 109: 1176-81. PMID 22228301 DOI: 10.1073/Pnas.1112041109  0.633
2012 Brockington SF, Rudall PJ, Frohlich MW, Oppenheimer DG, Soltis PS, Soltis DE. 'Living stones' reveal alternative petal identity programs within the core eudicots. The Plant Journal : For Cell and Molecular Biology. 69: 193-203. PMID 21951031 DOI: 10.1111/J.1365-313X.2011.04797.X  0.768
2012 Nickrent DL, Blarer A, Qiu YL, Soltis DE, Soltis PS, Zanis M. Molecular data place Hydnoraceae with Aristolochiaceae. American Journal of Botany. 89: 1809-17. PMID 21665609 DOI: 10.3732/Ajb.89.11.1809  0.82
2012 Soltis DE, Soltis PS. Walter S. Judd — Recipient of the 2011 Asa Gray Award Systematic Botany. 37: 1-4. DOI: 10.1600/036364412X616558  0.626
2012 Soltis DE, Mavrodiev EV, Meyers SC, Severns PM, Zhang L, Gitzendanner MA, Ayers T, Chester M, Soltis PS. Additional origins of Ownbey's Tragopogon mirus Botanical Journal of the Linnean Society. 169: 297-311. DOI: 10.1111/J.1095-8339.2012.01244.X  0.735
2012 Mavrodiev EV, Gitzendanner M, Calaminus AK, Baldini RM, Soltis PS, Soltis DE. Molecular phylogeny of Tragopogon L. (Asteraceae) based on seven nuclear loci (Adh, GapC, LFY, AP3, PI, ITS, and ETS) Webbia. 67: 111-137. DOI: 10.1080/00837792.2012.10670912  0.709
2012 Gitzendanner MA, Weekley CW, Germain-Aubrey CC, Soltis DE, Soltis PS. Microsatellite evidence for high clonality and limited genetic diversity in Ziziphus celata (Rhamnaceae), an endangered, self-incompatible shrub endemic to the Lake Wales Ridge, Florida, USA Conservation Genetics. 13: 223-234. DOI: 10.1007/S10592-011-0287-9  0.816
2012 Soltis PS, Soltis DE. Angiosperm phylogeny: A framework for studies of genome evolution Plant Genome Diversity. 2: 1-11. DOI: 10.1007/978-3-7091-1160-4_1  0.587
2011 Goff SA, Vaughn M, McKay S, Lyons E, Stapleton AE, Gessler D, Matasci N, Wang L, Hanlon M, Lenards A, Muir A, Merchant N, Lowry S, Mock S, Helmke M, ... ... Soltis D, et al. The iPlant Collaborative: Cyberinfrastructure for Plant Biology. Frontiers in Plant Science. 2: 34. PMID 22645531 DOI: 10.3389/Fpls.2011.00034  0.542
2011 Brockington SF, Walker RH, Glover BJ, Soltis PS, Soltis DE. Complex pigment evolution in the Caryophyllales. The New Phytologist. 190: 854-64. PMID 21714182 DOI: 10.1111/J.1469-8137.2011.03687.X  0.791
2011 Zuccolo A, Bowers JE, Estill JC, Xiong Z, Luo M, Sebastian A, Goicoechea JL, Collura K, Yu Y, Jiao Y, Duarte J, Tang H, Ayyampalayam S, Rounsley S, Kudrna D, ... ... Soltis DE, et al. A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure. Genome Biology. 12: R48. PMID 21619600 DOI: 10.1186/Gb-2011-12-5-R48  0.666
2011 Soltis DE, Smith SA, Cellinese N, Wurdack KJ, Tank DC, Brockington SF, Refulio-Rodriguez NF, Walker JB, Moore MJ, Carlsward BS, Bell CD, Latvis M, Crawley S, Black C, Diouf D, et al. Angiosperm phylogeny: 17 genes, 640 taxa. American Journal of Botany. 98: 704-30. PMID 21613169 DOI: 10.3732/Ajb.1000404  0.841
2011 Germain-Aubrey CC, Soltis PS, Soltis DE, Gitzendanner MA. Microsatellite marker development for the federally listed Prunus geniculata (Rosaceae). American Journal of Botany. 98: e58-60. PMID 21613125 DOI: 10.3732/Ajb.1000435  0.809
2011 Servick SV, Soltis PS, Soltis DE. Microsatellite marker development for Galax urceolata (Diapensiaceae). American Journal of Botany. 98: e48-50. PMID 21613122 DOI: 10.3732/Ajb.1000427  0.617
2011 Zhang SD, Soltis DE, Yang Y, Li DZ, Yi TS. Multi-gene analysis provides a well-supported phylogeny of Rosales. Molecular Phylogenetics and Evolution. 60: 21-8. PMID 21540119 DOI: 10.1016/J.Ympev.2011.04.008  0.368
2011 Jiao Y, Wickett NJ, Ayyampalayam S, Chanderbali AS, Landherr L, Ralph PE, Tomsho LP, Hu Y, Liang H, Soltis PS, Soltis DE, Clifton SW, Schlarbaum SE, Schuster SC, Ma H, et al. Ancestral polyploidy in seed plants and angiosperms. Nature. 473: 97-100. PMID 21478875 DOI: 10.1038/Nature09916  0.684
2011 Buggs RJ, Zhang L, Miles N, Tate JA, Gao L, Wei W, Schnable PS, Barbazuk WB, Soltis PS, Soltis DE. Transcriptomic shock generates evolutionary novelty in a newly formed, natural allopolyploid plant. Current Biology : Cb. 21: 551-6. PMID 21419627 DOI: 10.1016/J.Cub.2011.02.016  0.641
2011 Suárez-Santiago VN, Guardia CDDL, Soltis DE, Soltis PS, Blanca G. Tragopogon lainzii, a new species of Tragopogon (Asteraceae) segregated from T. Dubius: Evidence from morphological and molecular data Systematic Botany. 36: 470-480. DOI: 10.1600/036364411X569651  0.616
2011 Moore MJ, Hassan N, Gitzendanner MA, Bruenn RA, Croley M, Vandeventer A, Horn JW, Dhingra A, Brockington SF, Latvis M, Ramdial J, Alexandre R, Piedrahita A, Xi Z, Davis CC, ... ... Soltis DE, et al. Phylogenetic analysis of the plastid inverted repeat for 244 species: Insights into deeper-level Angiosperm relationships from a long, slowly evolving sequence region International Journal of Plant Sciences. 172: 541-558. DOI: 10.1086/658923  0.82
2011 Malinska H, Tate JA, Mavrodiev E, Matyasek R, Lim KY, Leitch AR, Soltis DE, Soltis PS, Kovarik A. Ribosomal RNA genes evolution in Tragopogon: A story of New and Old World allotetraploids and the synthetic lines Taxon. 60: 348-354. DOI: 10.1002/Tax.602005  0.566
2011 Buggs RJA, Soltis PS, Soltis DE. Biosystematic relationships and the formation of polyploids Taxon. 60: 324-332. DOI: 10.1002/Tax.602003  0.561
2011 Soltis PS, Burleigh JG, Chanderbali AS, Yoo MJ, Soltis DE. Gene and Genome Duplications in Plants Evolution After Gene Duplication. 269-298. DOI: 10.1002/9780470619902.ch15  0.784
2011 Carlsward BS, Judd WS, Soltis DE, Manchester S, Soltis PS. Putative morphological synapomorphies of Saxifragales and their major subclades Journal of the Botanical Research Institute of Texas. 5: 179-196.  0.57
2010 Chester M, Leitch AR, Soltis PS, Soltis DE. Review of the Application of Modern Cytogenetic Methods (FISH/GISH) to the Study of Reticulation (Polyploidy/Hybridisation). Genes. 1: 166-92. PMID 24710040 DOI: 10.3390/Genes1020166  0.681
2010 Arakaki M, Soltis DE, Soltis PS, Speranza PR. Characterization of polymorphic microsatellite loci in Haageocereus (Trichocereeae, Cactaceae). American Journal of Botany. 97: e17-9. PMID 21622399 DOI: 10.3732/Ajb.1000026  0.601
2010 López-Vinyallonga S, Arakaki M, Garcia-Jacas N, Susanna A, Gitzendanner MA, Soltis DE, Soltis PS. Isolation and characterization of novel microsatellite markers for Arctium minus (Compositae). American Journal of Botany. 97: e4-6. PMID 21622378 DOI: 10.3732/Ajb.0900376  0.762
2010 Bell CD, Soltis DE, Soltis PS. The age and diversification of the angiosperms re-revisited. American Journal of Botany. 97: 1296-303. PMID 21616882 DOI: 10.3732/Ajb.0900346  0.603
2010 Chanderbali AS, Yoo MJ, Zahn LM, Brockington SF, Wall PK, Gitzendanner MA, Albert VA, Leebens-Mack J, Altman NS, Ma H, dePamphilis CW, Soltis DE, Soltis PS. Conservation and canalization of gene expression during angiosperm diversification accompany the origin and evolution of the flower. Proceedings of the National Academy of Sciences of the United States of America. 107: 22570-5. PMID 21149731 DOI: 10.1073/Pnas.1013395108  0.802
2010 Yoo MJ, Chanderbali AS, Altman NS, Soltis PS, Soltis DE. Evolutionary trends in the floral transcriptome: insights from one of the basalmost angiosperms, the water lily Nuphar advena (Nymphaeaceae). The Plant Journal : For Cell and Molecular Biology. 64: 687-98. PMID 21070420 DOI: 10.1111/J.1365-313X.2010.04357.X  0.773
2010 Malinska H, Tate JA, Matyasek R, Leitch AR, Soltis DE, Soltis PS, Kovarik A. Similar patterns of rDNA evolution in synthetic and recently formed natural populations of Tragopogon (Asteraceae) allotetraploids. Bmc Evolutionary Biology. 10: 291. PMID 20858289 DOI: 10.1186/1471-2148-10-291  0.608
2010 Buggs RJ, Elliott NM, Zhang L, Koh J, Viccini LF, Soltis DE, Soltis PS. Tissue-specific silencing of homoeologs in natural populations of the recent allopolyploid Tragopogon mirus. The New Phytologist. 186: 175-83. PMID 20409177 DOI: 10.1111/J.1469-8137.2010.03205.X  0.738
2010 Buggs RJ, Chamala S, Wu W, Gao L, May GD, Schnable PS, Soltis DE, Soltis PS, Barbazuk WB. Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping. Molecular Ecology. 19: 132-46. PMID 20331776 DOI: 10.1111/J.1365-294X.2009.04469.X  0.642
2010 Symonds VV, Soltis PS, Soltis DE. Dynamics of polyploid formation in Tragopogon (Asteraceae): recurrent formation, gene flow, and population structure. Evolution; International Journal of Organic Evolution. 64: 1984-2003. PMID 20199558 DOI: 10.1111/J.1558-5646.2010.00978.X  0.68
2010 Moore MJ, Soltis PS, Bell CD, Burleigh JG, Soltis DE. Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots. Proceedings of the National Academy of Sciences of the United States of America. 107: 4623-8. PMID 20176954 DOI: 10.1073/Pnas.0907801107  0.718
2010 Koh J, Soltis PS, Soltis DE. Homeolog loss and expression changes in natural populations of the recently and repeatedly formed allotetraploid Tragopogon mirus (Asteraceae). Bmc Genomics. 11: 97. PMID 20141639 DOI: 10.1186/1471-2164-11-97  0.763
2010 Haufler CH, Soltis DE. Genetic evidence suggests that homosporous ferns with high chromosome numbers are diploid. Proceedings of the National Academy of Sciences of the United States of America. 83: 4389-93. PMID 16593713 DOI: 10.1073/Pnas.83.12.4389  0.396
2010 Givnish TJ, Ames M, McNeal JR, McKain MR, Steele PR, Depamphilis CW, Graham SW, Pires JC, Stevenson DW, Zomlefer WB, Briggs BG, Duvall MR, Moore MJ, Heaney JM, Soltis DE, et al. Assembling the tree of the monocotyledons: Plastome sequence phylogeny and evolution of Poales Annals of the Missouri Botanical Garden. 97: 584-616. DOI: 10.3417/2010023  0.681
2010 Soltis DE, Moore MJ, Burleigh JG, Bell CD, Soltis PS. Assembling the angiosperm tree of life: Progress and future prospects Annals of the Missouri Botanical Garden. 97: 514-526. DOI: 10.3417/2009136  0.664
2010 Morris AB, Graham CH, Soltis DE, Soltis PS. Reassessment of phylogeographical structure in an eastern North American tree using Monmonier's algorithm and ecological niche modelling Journal of Biogeography. 37: 1657-1667. DOI: 10.1111/J.1365-2699.2010.02315.X  0.629
2010 Hanlon MR, Mock S, Nuthulapati P, Gonzales MB, Soltis P, Soltis D, Majure LC, Payton A, Mishler B, Tremblay S, Madsen T, Olmstead R, McCourt R, Wojciechowski M, Merchant N. My-Plant.org: A phylogenetically structured social network 2010 Gateway Computing Environments Workshop, Gce 2010. DOI: 10.1109/GCE.2010.5676118  0.53
2010 Yoo MJ, Soltis PS, Soltis DE. Expression of floral MADS-box genes in two divergent water lilies: Nymphaeales and Nelumbo International Journal of Plant Sciences. 171: 121-146. DOI: 10.1086/648986  0.77
2010 Soltis DE, Buggs RJA, Doyle JJ, Soltis PS. What we still don't know about polyploidy Taxon. 59: 1387-1403. DOI: 10.1002/Tax.595006  0.647
2010 Soltis DE, Burleigh G, Barbazuk WB, Moore MJ, Soltis PS. Advances in the use of next-generation sequence data in plant systematics and evolution Acta Horticulturae. 859: 193-206.  0.604
2009 Tate JA, Symonds VV, Doust AN, Buggs RJ, Mavrodiev E, Majure LC, Soltis PS, Soltis DE. Synthetic polyploids of Tragopogon miscellus and T. mirus (Asteraceae): 60 Years after Ownbey's discovery. American Journal of Botany. 96: 979-88. PMID 21628250 DOI: 10.3732/Ajb.0800299  0.576
2009 Soltis DE, Albert VA, Leebens-Mack J, Bell CD, Paterson AH, Zheng C, Sankoff D, Depamphilis CW, Wall PK, Soltis PS. Polyploidy and angiosperm diversification. American Journal of Botany. 96: 336-48. PMID 21628192 DOI: 10.3732/Ajb.0800079  0.665
2009 Soltis PS, Brockington SF, Yoo MJ, Piedrahita A, Latvis M, Moore MJ, Chanderbali AS, Soltis DE. Floral variation and floral genetics in basal angiosperms. American Journal of Botany. 96: 110-28. PMID 21628179 DOI: 10.3732/Ajb.0800182  0.824
2009 Clayton JW, Soltis PS, Soltis DE. Recent long-distance dispersal overshadows ancient biogeographical patterns in a pantropical angiosperm family (Simaroubaceae, Sapindales). Systematic Biology. 58: 395-410. PMID 20525593 DOI: 10.1093/Sysbio/Syp041  0.787
2009 Soltis DE, Buggs RJ, Barbazuk WB, Schnable PS, Soltis PS. On the origins of species: does evolution repeat itself in polyploid populations of independent origin? Cold Spring Harbor Symposia On Quantitative Biology. 74: 215-23. PMID 19687140 DOI: 10.1101/Sqb.2009.74.007  0.638
2009 Wall PK, Leebens-Mack J, Chanderbali AS, Barakat A, Wolcott E, Liang H, Landherr L, Tomsho LP, Hu Y, Carlson JE, Ma H, Schuster SC, Soltis DE, Soltis PS, Altman N, et al. Comparison of next generation sequencing technologies for transcriptome characterization. Bmc Genomics. 10: 347. PMID 19646272 DOI: 10.1186/1471-2164-10-347  0.619
2009 Buggs RJ, Soltis PS, Soltis DE. Does hybridization between divergent progenitors drive whole-genome duplication? Molecular Ecology. 18: 3334-9. PMID 19627486 DOI: 10.1111/J.1365-294X.2009.04285.X  0.646
2009 Soltis PS, Soltis DE. The role of hybridization in plant speciation. Annual Review of Plant Biology. 60: 561-88. PMID 19575590 DOI: 10.1146/Annurev.Arplant.043008.092039  0.689
2009 Tate JA, Joshi P, Soltis KA, Soltis PS, Soltis DE. On the road to diploidization? Homoeolog loss in independently formed populations of the allopolyploid Tragopogon miscellus (Asteraceae). Bmc Plant Biology. 9: 80. PMID 19558696 DOI: 10.1186/1471-2229-9-80  0.651
2009 Chanderbali AS, Albert VA, Leebens-Mack J, Altman NS, Soltis DE, Soltis PS. Transcriptional signatures of ancient floral developmental genetics in avocado (Persea americana; Lauraceae). Proceedings of the National Academy of Sciences of the United States of America. 106: 8929-34. PMID 19451627 DOI: 10.1073/Pnas.0811476106  0.614
2009 Soltis DE, Burleigh JG. Surviving the K-T mass extinction: new perspectives of polyploidization in angiosperms. Proceedings of the National Academy of Sciences of the United States of America. 106: 5455-6. PMID 19336584 DOI: 10.1073/Pnas.0901994106  0.444
2009 Garcia-Jacas N, Soltis PS, Font M, Soltis DE, Vilatersana R, Susanna A. The polyploid series of Centaurea toletana: glacial migrations and introgression revealed by nrDNA and cpDNA sequence analyzes. Molecular Phylogenetics and Evolution. 52: 377-94. PMID 19306936 DOI: 10.1016/J.Ympev.2009.03.010  0.667
2009 Burleigh JG, Hilu KW, Soltis DE. Inferring phylogenies with incomplete data sets: a 5-gene, 567-taxon analysis of angiosperms. Bmc Evolutionary Biology. 9: 61. PMID 19292928 DOI: 10.1186/1471-2148-9-61  0.409
2009 Buggs RJ, Doust AN, Tate JA, Koh J, Soltis K, Feltus FA, Paterson AH, Soltis PS, Soltis DE. Gene loss and silencing in Tragopogon miscellus (Asteraceae): comparison of natural and synthetic allotetraploids. Heredity. 103: 73-81. PMID 19277058 DOI: 10.1038/Hdy.2009.24  0.767
2009 Wang H, Moore MJ, Soltis PS, Bell CD, Brockington SF, Alexandre R, Davis CC, Latvis M, Manchester SR, Soltis DE. Rosid radiation and the rapid rise of angiosperm-dominated forests. Proceedings of the National Academy of Sciences of the United States of America. 106: 3853-8. PMID 19223592 DOI: 10.1073/Pnas.0813376106  0.819
2009 Bremer B, Bremer K, Chase MW, Fay MF, Reveal JL, Bailey LH, Soltis DE, Soltis PS, Stevens PF. An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III Botanical Journal of the Linnean Society. 161: 105-121. DOI: 10.1111/Boj.12385  0.664
2009 Baker CA, Jones L, Leahy RM, Soltis DE. Tomato spotted wilt virus found in five species of the genus tragopogon in a Florida Greenhouse Plant Disease. 93: 546. DOI: 10.1094/Pdis-93-5-0546A  0.338
2009 Brockington SF, Alexandre R, Ramdial J, Moore MJ, Crawley S, Dhingra A, Hilu K, Soltis DE, Soltisy PS. Phylogeny of the Caryophyllales sensu lato: Revisiting hypotheses on pollination biology and perianth differentiation in the core Caryophyllales International Journal of Plant Sciences. 170: 627-643. DOI: 10.1086/597785  0.738
2009 Soltis DE, Moore MJ, Burleigh G, Soltis PS. Molecular markers and concepts of plant evolutionary relationships: Progress, promise, and future prospects Critical Reviews in Plant Sciences. 28: 1-15. DOI: 10.1080/07352680802665297  0.685
2009 Albach DC, Soltis PS, Soltis DE. Patterns of Embryological and Biochemical Evolution in the Asterids Systematic Botany. 26: 242-262. DOI: 10.1043/0363-6445-26.2.242  0.777
2009 Allen GA, Soltis DE, Soltis PS. Phylogeny and Biogeography of Erythronium (Liliaceae) Inferred from Chloroplast matK and Nuclear rDNA ITS Sequences Systematic Botany. 28: 512-523. DOI: 10.1043/02-18.1  0.671
2009 Soltis DE. Flowers and Flowering Trends in Ecology and Evolution. 24: 124-125. DOI: 10.1016/J.Tree.2008.10.010  0.365
2008 Edwards CE, Soltis DE, Soltis PS. PERMANENT GENETIC RESOURCES: Isolation, characterization and cross-species amplifications of microsatellite loci from Conradina (Lamiaceae). Molecular Ecology Resources. 8: 363-6. PMID 21585793 DOI: 10.1111/J.1471-8286.2007.01957.X  0.642
2008 Edwards CE, Soltis DE, Soltis PS. Using patterns of genetic structure based on microsatellite loci to test hypotheses of current hybridization, ancient hybridization and incomplete lineage sorting in Conradina (Lamiaceae). Molecular Ecology. 17: 5157-74. PMID 19120994 DOI: 10.1111/J.1365-294X.2008.03985.X  0.67
2008 Doyle JJ, Flagel LE, Paterson AH, Rapp RA, Soltis DE, Soltis PS, Wendel JF. Evolutionary genetics of genome merger and doubling in plants. Annual Review of Genetics. 42: 443-61. PMID 18983261 DOI: 10.1146/Annurev.Genet.42.110807.091524  0.673
2008 Lim KY, Soltis DE, Soltis PS, Tate J, Matyasek R, Srubarova H, Kovarik A, Pires JC, Xiong Z, Leitch AR. Rapid chromosome evolution in recently formed polyploids in Tragopogon (Asteraceae). Plos One. 3: e3353. PMID 18843372 DOI: 10.1371/Journal.Pone.0003353  0.65
2008 Morris AB, Ickert-Bond SM, Brunson DB, Soltis DE, Soltis PS. Phylogeographical structure and temporal complexity in American sweetgum (Liquidambar styraciflua; Altingiaceae). Molecular Ecology. 17: 3889-900. PMID 18662227 DOI: 10.1111/J.1365-294X.2008.03875.X  0.655
2008 Soltis DE, Bell CD, Kim S, Soltis PS. Origin and early evolution of angiosperms. Annals of the New York Academy of Sciences. 1133: 3-25. PMID 18559813 DOI: 10.1196/Annals.1438.005  0.677
2008 Chanderbali AS, Albert VA, Ashworth VE, Clegg MT, Litz RE, Soltis DE, Soltis PS. Persea americana (avocado): bringing ancient flowers to fruit in the genomics era. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 30: 386-96. PMID 18348249 DOI: 10.1002/Bies.20721  0.689
2008 Soltis DE, Albert VA, Leebens-Mack J, Palmer JD, Wing RA, dePamphilis CW, Ma H, Carlson JE, Altman N, Kim S, Wall PK, Zuccolo A, Soltis PS. The Amborella genome: an evolutionary reference for plant biology. Genome Biology. 9: 402. PMID 18341710 DOI: 10.1186/Gb-2008-9-3-402  0.663
2008 Zhang W, Xiang QY, Thomas DT, Wiegmann BM, Frohlich MW, Soltis DE. Molecular evolution of PISTILLATA-like genes in the dogwood genus Cornus (Cornaceae). Molecular Phylogenetics and Evolution. 47: 175-95. PMID 18304837 DOI: 10.1016/J.Ympev.2007.12.022  0.816
2008 Jian S, Soltis PS, Gitzendanner MA, Moore MJ, Li R, Hendry TA, Qiu YL, Dhingra A, Bell CD, Soltis DE. Resolving an ancient, rapid radiation in Saxifragales. Systematic Biology. 57: 38-57. PMID 18275001 DOI: 10.1080/10635150801888871  0.783
2008 Soltis PS, Soltis DE. The role of genetic and genomic attributes in the success of polyploids. Proceedings of the National Academy of Sciences of the United States of America. 97: 7051-7. PMID 10860970 DOI: 10.1073/Pnas.97.13.7051  0.683
2008 Buggs RJA, Soltis PS, Mavrodiev EV, Symonds VV, Soltis DE. Does phylogenetic distance between parental Genomes Govern the success of polyploids Castanea. 73: 74-93. DOI: 10.2179/0008-7475(2008)73[74:Dpdbpg]2.0.Co;2  0.638
2008 Vergara R, Minno MC, Minno M, Soltis DE, Soltis PS. Preliminary study using ISSRs to differentiate Imperata taxa (Poaceae: Andropogoneae) growing in the US Southeastern Naturalist. 7: 267-276. DOI: 10.1656/1528-7092(2008)7[267:Psuitd]2.0.Co;2  0.613
2008 Soltis DE, Mavrodiev EV, Doyle JJ, Rauscher J, Soltis PS. ITS and ETS sequence data and phylogeny reconstruction in allopolyploids and hybrids Systematic Botany. 33: 7-20. DOI: 10.1600/036364408783887401  0.645
2008 Mavrodiev EV, Nawchoo I, Soltis PS, Soltis DE. Molecular data reveal that the tetraploid Tragopogon kashmirianus (Asteraceae: Lactuceae) is distinct from the North American T. mirus Botanical Journal of the Linnean Society. 158: 391-398. DOI: 10.1111/J.1095-8339.2008.00900.X  0.568
2008 Edwards CE, Lefkowitz D, Soltis DE, Soltis PS. Phylogeny of Conradina and related southeastern scrub mints (Lamiaceae) based on GapC gene sequences International Journal of Plant Sciences. 169: 579-594. DOI: 10.1086/528758  0.689
2008 Mavrodiev EV, Soltis PS, Soltis DE. Putative parentage of six Old World polyploids in Tragopogon L. (Asteraceae: Scorzonerinae) based on ITS, ETS, and plastid sequence data Taxon. 57: 1215-1232. DOI: 10.1002/Tax.574014  0.562
2008 Löhne C, Yoo MJ, Borsch T, Wiersema J, Wilde V, Bell CD, Barthlott W, Soltis DE, Soltis PS. Biogeography of Nymphaeales: Extant patterns and historical events Taxon. 57: 1123-1146. DOI: 10.1002/Tax.574008  0.794
2008 Duarte JM, Wall PK, Zahn LM, Soltis PS, Soltis DE, Leebens-Mack J, Carlson JE, Ma H, DePamphilis CW. Utility of Amborella trichopoda and Nuphar advena expressed sequence tags for comparative sequence analysis Taxon. 57: 1110-1122. DOI: 10.1002/Tax.574007  0.664
2008 Brockington SF, Mavrodiev E, Ramdial J, Dhingra A, Soltis PS, Soltis DE. Keep the DNA rolling: Multiple Displacement Amplification of archival plant DNA extracts Taxon. 57: 944-948. DOI: 10.1002/Tax.573022  0.773
2007 Oliveira LO, Huck RB, Gitzendanner MA, Judd WS, Soltis DE, Soltis PS. Molecular phylogeny, biogeography, and systematics of Dicerandra (Lamiaceae), a genus endemic to the southeastern United States. American Journal of Botany. 94: 1017-27. PMID 21636471 DOI: 10.3732/Ajb.94.6.1017  0.771
2007 Paun O, Fay MF, Soltis DE, Chase MW. Genetic and epigenetic alterations after hybridization and genome doubling. Taxon. 56: 649-56. PMID 21082042  0.544
2007 Moore MJ, Bell CD, Soltis PS, Soltis DE. Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms. Proceedings of the National Academy of Sciences of the United States of America. 104: 19363-8. PMID 18048334 DOI: 10.1073/Pnas.0708072104  0.684
2007 Soltis DE, Ma H, Frohlich MW, Soltis PS, Albert VA, Oppenheimer DG, Altman NS, dePamphilis C, Leebens-Mack J. The floral genome: an evolutionary history of gene duplication and shifting patterns of gene expression Trends in Plant Science. 12: 358-367. PMID 17658290 DOI: 10.1016/J.Tplants.2007.06.012  0.648
2007 Soltis DE, Chanderbali AS, Kim S, Buzgo M, Soltis PS. The ABC model and its applicability to basal angiosperms. Annals of Botany. 100: 155-63. PMID 17616563 DOI: 10.1093/Aob/Mcm117  0.667
2007 Matyásek R, Tate JA, Lim YK, Srubarová H, Koh J, Leitch AR, Soltis DE, Soltis PS, Kovarík A. Concerted evolution of rDNA in recently formed Tragopogon allotetraploids is typically associated with an inverse correlation between gene copy number and expression. Genetics. 176: 2509-19. PMID 17603114 DOI: 10.1534/Genetics.107.072751  0.733
2007 Manos PS, Soltis PS, Soltis DE, Manchester SR, Oh SH, Bell CD, Dilcher DL, Stone DE. Phylogeny of extant and fossil Juglandaceae inferred from the integration of molecular and morphological data sets. Systematic Biology. 56: 412-30. PMID 17558964 DOI: 10.1080/10635150701408523  0.664
2007 Chen ZJ, Ha M, Soltis D. Polyploidy: genome obesity and its consequences. The New Phytologist. 174: 717-20. PMID 17504455 DOI: 10.1111/J.1469-8137.2007.02084.X  0.398
2007 Suárez-Santiago VN, Salinas MJ, Garcia-Jacas N, Soltis PS, Soltis DE, Blanca G. Reticulate evolution in the Acrolophus subgroup (Centaurea L., Compositae) from the western Mediterranean: Origin and diversification of section Willkommia Blanca Molecular Phylogenetics and Evolution. 43: 156-172. PMID 17129737 DOI: 10.1016/J.Ympev.2006.08.006  0.605
2007 Cantino PD, Doyle JA, Graham SW, Judd WS, Olmstead RG, Soltis DE, Soltis PS, Donoghue MJ. Towards a phylogenetic nomenclature of Tracheophyta Taxon. 56: 822-846. DOI: 10.2307/25065864  0.656
2007 Paun O, Fay MF, Soltis DE, Chase MW. Genetic and epigenetic alterations after hybridization and genome doubling Taxon. 56: 649-656. DOI: 10.2307/25065850  0.599
2007 Soltis DE, Clayton JW, Davis CC, Gitzendanner MA, Cheek M, Savolainen V, Amorim AM, Soltis PS. Monophyly and relationships of the enigmatic family Peridiscaceae Taxon. 56: 65-73. DOI: 10.2307/25065736  0.818
2007 Soltis DE, Soltis PS, Schemske DW, Hancock JF, Thompson JN, Husband BC, Judd WS. Autopolyploidy in angiosperms: Have we grossly underestimated the number of species? Taxon. 56: 13-30. DOI: 10.2307/25065732  0.662
2007 Arakaki M, Soltis DE, Speranza P. New chromosome counts and evidence of polyploidy in Haageocereus and related genera in tribe Trichocereeae and other tribes of Cactaceae Brittonia. 59: 290-297. DOI: 10.1663/0007-196X(2007)59[290:Nccaeo]2.0.Co;2  0.31
2007 Judd WS, Soltis DE, Soltis PS, Ionta G. Tolmiea diplomenziesii: A new species from the Pacific Northwest and the diploid sister taxon of the autotetraploid T. menziesii (Saxifragaceae) Brittonia. 59: 217-225. DOI: 10.1663/0007-196X(2007)59[217:Tdansf]2.0.Co;2  0.652
2007 Morris AB, Bell CD, Clayton JW, Judd WS, Soltis DE, Soltis PS. Phylogeny and divergence time estimation in Illicium with implications for new world biogeography Systematic Botany. 32: 236-249. DOI: 10.1600/036364407781179734  0.794
2007 Soltis DE. Reconstructing The Tree Of Life: Taxonomy And Systematics Of Species Rich Taxa1 Evolution. 61: 3007-3011. DOI: 10.1111/J.1558-5646.2007.00244.X  0.401
2007 Edwards CE, Arakaki M, Quintana-Ascencio PF, Soltis DE, Soltis PS. Isolation and characterization of microsatellite loci from the endangered highlands scrub hypericum (Hypericum cumulicola) Molecular Ecology Notes. 7: 1135-1137. DOI: 10.1111/J.1471-8286.2007.01808.X  0.592
2007 Clayton JW, Fernando ES, Soltis PS, Soltis DE. Molecular phylogeny of the tree-of-heaven family (simaroubaceae) based on chloroplast and nuclear markers International Journal of Plant Sciences. 168: 1325-1339. DOI: 10.1086/521796  0.797
2007 Mavrodiev EV, Soltis PS, Gitzendanner MA, Baldini RM, Soltis DE. Polyphyly of Tragopogon porrifolius L. (Asteraceae), a European native with intercontinental disjuncts International Journal of Plant Sciences. 168: 889-904. DOI: 10.1086/518258  0.741
2007 Buzgo M, Chanderbali AS, Kim S, Zheng U, Oppenheimer DG, Soltis PS, Soltis DE. Floral developmental morphology of Persea americana (Avocado, Lauraceae): The oddities of male organ identity International Journal of Plant Sciences. 168: 261-284. DOI: 10.1086/510297  0.631
2007 Soltis DE, Gitzendanner MA, Soltis PS. A 567-taxon data set for angiosperms: The challenges posed by Bayesian analyses of large data sets International Journal of Plant Sciences. 168: 137-157. DOI: 10.1086/509788  0.75
2006 Soltis DE, Morris AB, McLachlan JS, Manos PS, Soltis PS. Comparative phylogeography of unglaciated eastern North America. Molecular Ecology. 15: 4261-93. PMID 17107465 DOI: 10.1111/J.1365-294X.2006.03061.X  0.651
2006 Moore MJ, Dhingra A, Soltis PS, Shaw R, Farmerie WG, Folta KM, Soltis DE. Rapid and accurate pyrosequencing of angiosperm plastid genomes. Bmc Plant Biology. 6: 17. PMID 16934154 DOI: 10.1186/1471-2229-6-17  0.642
2006 Lindqvist C, Scheen AC, Yoo MJ, Grey P, Oppenheimer DG, Leebens-Mack JH, Soltis DE, Soltis PS, Albert VA. An expressed sequence tag (EST) library from developing fruits of an Hawaiian endemic mint (Stenogyne rugosa, Lamiaceae): Characterization and microsatellite markers Bmc Plant Biology. 6. PMID 16928278 DOI: 10.1186/1471-2229-6-16  0.83
2006 Leebens-Mack J, Vision T, Brenner E, Bowers JE, Cannon S, Clement MJ, Cunningham CW, dePamphilis C, deSalle R, Doyle JJ, Eisen JA, Gu X, Harshman J, Jansen RK, Kellogg EA, ... ... Soltis DE, et al. Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA). Omics : a Journal of Integrative Biology. 10: 231-7. PMID 16901231 DOI: 10.1089/Omi.2006.10.231  0.655
2006 Cui L, Wall PK, Leebens-Mack JH, Lindsay BG, Soltis DE, Doyle JJ, Soltis PS, Carlson JE, Arumuganathan K, Barakat A, Albert VA, Ma H, DePamphilis CW. Widespread genome duplications throughout the history of flowering plants Genome Research. 16: 738-749. PMID 16702410 DOI: 10.1101/Gr.4825606  0.681
2006 Tate JA, Ni Z, Scheen AC, Koh J, Gilbert CA, Lefkowitz D, Chen ZJ, Soltis PS, Soltis DE. Evolution and expression of homeologous loci in Tragopogon miscellus (Asteraceae), a recent and reciprocally formed allopolyploid. Genetics. 173: 1599-611. PMID 16648586 DOI: 10.1534/Genetics.106.057646  0.758
2006 Yoo MJ, Albert VA, Soltis PS, Soltis DE. Phylogenetic diversification of glycogen synthase kinase 3/SHAGGY-like kinase genes in plants Bmc Plant Biology. 6. PMID 16504046 DOI: 10.1186/1471-2229-6-3  0.809
2006 Kim S, Soltis PS, Wall K, Soltis DE. Phylogeny and domain evolution in the APETALA2-like gene family. Molecular Biology and Evolution. 23: 107-20. PMID 16151182 DOI: 10.1093/Molbev/Msj014  0.632
2006 Buzgo M, Soltis D, Soltis P, Kim S, Ma H, Hauser B, Bo Johansen B, Lebens-Mack J. Perianth Development in the Basal Monocot Triglochin Maritima (Juncaginaceae) Aliso. 22: 107-125. DOI: 10.5642/Aliso.20062201.09  0.615
2006 Chase MW, Fay MF, Soltis DE, Soltis PS, Takahashi KT, Savolainen V. Simple phylogenetic tree searches easily "succeed" with large matrices of single genes Taxon. 55: 573-578. DOI: 10.2307/25065633  0.691
2006 Edwards CE, Soltis DE, Soltis PS. Molecular phylogeny of conradina and other scrub mints (Lamiaceae) from the southeastern USA: Evidence for hybridization in pleistocene refugia? Systematic Botany. 31: 193-207. DOI: 10.1600/036364406775971688  0.673
2006 Chanderbali AS, Kim S, Buzgo M, Zheng U, Oppenheimer DG, Soltis DE, Soltis PS. Genetic footprints of stamen ancestors guide perianth evolution in Persea (Lauraceae) International Journal of Plant Sciences. 167: 1075-1089. DOI: 10.1086/507586  0.622
2006 Soltis PS, Soltis DE, Kim S, Chanderbali A, Buzgo M. Expression of Floral Regulators in Basal Angiosperms and the Origin and Evolution of ABC-Function Advances in Botanical Research. 44: 483-506. DOI: 10.1016/S0065-2296(06)44012-X  0.618
2005 Leebens-Mack J, Soltis DE, Soltis PS. Plant reproductive genomics at the Plant and Animal Genome Conference. Comparative and Functional Genomics. 6: 159-69. PMID 18629227 DOI: 10.1002/Cfg.469  0.653
2005 Kim S, Koh J, Yoo MJ, Kong H, Hu Y, Ma H, Soltis PS, Soltis DE. Expression of floral MADS-box genes in basal angiosperms: implications for the evolution of floral regulators. The Plant Journal : For Cell and Molecular Biology. 43: 724-44. PMID 16115069 DOI: 10.1111/J.1365-313X.2005.02487.X  0.81
2005 Bell CD, Soltis DE, Soltis PS. The age of the angiosperms: a molecular timescale without a clock. Evolution; International Journal of Organic Evolution. 59: 1245-58. PMID 16050101 DOI: 10.1111/J.0014-3820.2005.Tb01775.X  0.632
2005 Albert VA, Soltis DE, Carlson JE, Farmerie WG, Wall PK, Ilut DC, Solow TM, Mueller LA, Landherr LL, Hu Y, Buzgo M, Kim S, Yoo MJ, Frohlich MW, Perl-Treves R, et al. Floral gene resources from basal angiosperms for comparative genomics research. Bmc Plant Biology. 5: 5. PMID 15799777 DOI: 10.1186/1471-2229-5-5  0.821
2005 Zahn LM, Kong H, Leebens-Mack JH, Kim S, Soltis PS, Landherr LL, Soltis DE, Depamphilis CW, Ma H. The evolution of the SEPALLATA subfamily of MADS-box genes: a preangiosperm origin with multiple duplications throughout angiosperm history. Genetics. 169: 2209-23. PMID 15687268 DOI: 10.1534/Genetics.104.037770  0.681
2005 Kovarik A, Pires JC, Leitch AR, Lim KY, Sherwood AM, Matyasek R, Rocca J, Soltis DE, Soltis PS. Rapid concerted evolution of nuclear ribosomal DNA in two Tragopogon allopolyploids of recent and recurrent origin. Genetics. 169: 931-44. PMID 15654116 DOI: 10.1534/Genetics.104.032839  0.606
2005 Leitch IJ, Soltis DE, Soltis PS, Bennett MD. Evolution of DNA amounts across land plants (embryophyta). Annals of Botany. 95: 207-17. PMID 15596468 DOI: 10.1093/Aob/Mci014  0.621
2005 Yoo MJ, Bell CD, Soltis PS, Soltis DE. Divergence times and historical biogeography of nymphaeales Systematic Botany. 30: 693-704. DOI: 10.1600/036364405775097798  0.801
2005 Qiu YL, Dombrovska O, Lee J, Li L, Whitlock BA, Bernasconi-Quadroni F, Rest JS, Davis CC, Borsch T, Hilu KW, Renner SS, Soltis DE, Soltis PS, Zanis MJ, Cannone JJ, et al. Phylogenetic analyses of basal angiosperms based on nine plastid, mitochondrial, and nuclear genes International Journal of Plant Sciences. 166: 815-842. DOI: 10.1086/431800  0.824
2005 Meléndez-Ackerman EJ, Speranza P, Kress WJ, Rohena L, Toledo E, Cortés C, Treece D, Gitzendanner M, Soltis P, Soltis D. Microevolutionary processes inferred from AFLP and morphological variation in Heliconia bihai (Heliconiaceae) International Journal of Plant Sciences. 166: 781-794. DOI: 10.1086/431231  0.771
2005 Kim S, Koh J, Ma H, Hu Y, Endress PK, Hauser BA, Buzgo M, Soltis PS, Soltis DE. Sequence and Expression Studies of A‐, B‐, and E‐Class MADS‐Box Homologues in Eupomatia (Eupomatiaceae): Support for the Bracteate Origin of the Calyptra International Journal of Plant Sciences. 166: 185-198. DOI: 10.1086/427479  0.742
2005 Mavrodiev EV, Tancig M, Sherwood AM, Gitzendanner MA, Rocca J, Soltis PS, Soltis DE. Phylogeny of Tragopogon L. (Asteraceae) based on internal and external transcribed spacer sequence data International Journal of Plant Sciences. 166: 117-133. DOI: 10.1086/425206  0.773
2005 Tate JA, Soltis PS, Soltis DE. Polyploidy in Plants The Evolution of the Genome. 371-426. DOI: 10.1016/B978-012301463-4/50009-7  0.548
2005 Leebens-Mack J, Soltis DE, Soltis PS. Plant reproductive genomics at the Plant and Animal Genome Conference: Conference Papers Comparative and Functional Genomics. 6: 159-169. DOI: 10.1002/Cfg.V6:3  0.679
2005 Buzgo M, Soltis PS, Kim S, Soltis DE. The making of the flower Biologist. 52: 149-154.  0.501
2005 Kim S, Koh J, Ma H, Hu Y, Endress PK, Hauser BA, Buzgo M, Soltis PS, Soltis DE. Sequence and expression studies of A-, B-, and E-class MADS-box homologues in Eupomatia (Eupomatiaceae): Support for the bracteate origin of the calyptra International Journal of Plant Sciences. 166: 185-198.  0.695
2004 Pires JC, Lim KY, Kovarík A, Matyásek R, Boyd A, Leitch AR, Leitch IJ, Bennett MD, Soltis PS, Soltis DE. Molecular cytogenetic analysis of recently evolved Tragopogon (Asteraceae) allopolyploids reveal a karyotype that is additive of the diploid progenitors. American Journal of Botany. 91: 1022-35. PMID 21653458 DOI: 10.3732/Ajb.91.7.1022  0.621
2004 Soltis DE, Soltis PS. Amborella not a "basal angiosperm"? Not so fast. American Journal of Botany. 91: 997-1001. PMID 21653455 DOI: 10.3732/Ajb.91.6.997  0.667
2004 Scheen AC, Brochmann C, Brysting AK, Elven R, Morris A, Soltis DE, Soltis PS, Albert VA. Northern hemisphere biogeography of Cerastium (Caryophyllaceae): insights from phylogenetic analysis of noncoding plastidnucleotide sequences. American Journal of Botany. 91: 943-52. PMID 21653450 DOI: 10.3732/Ajb.91.6.943  0.669
2004 Kim S, Soltis DE, Soltis PS, Suh Y. DNA sequences from Miocene fossils: an ndhF sequence of Magnolia latahensis (Magnoliaceae) and an rbcL sequence of Persea pseudocarolinensis (Lauraceae). American Journal of Botany. 91: 615-20. PMID 21653417 DOI: 10.3732/Ajb.91.4.615  0.617
2004 Kim S, Yoo MJ, Albert VA, Farris JS, Soltis PS, Soltis DE. Phylogeny and diversification of B-function MADS-box genes in angiosperms: evolutionary and functional implications of a 260-million-year-old duplication. American Journal of Botany. 91: 2102-18. PMID 21652358 DOI: 10.3732/Ajb.91.12.2102  0.797
2004 Soltis PS, Soltis DE. The origin and diversification of angiosperms. American Journal of Botany. 91: 1614-26. PMID 21652312 DOI: 10.3732/Ajb.91.10.1614  0.687
2004 Palmer JD, Soltis DE, Chase MW. The plant tree of life: an overview and some points of view. American Journal of Botany. 91: 1437-45. PMID 21652302 DOI: 10.3732/Ajb.91.10.1437  0.526
2004 Soltis DE, Albert VA, Savolainen V, Hilu K, Qiu YL, Chase MW, Farris JS, Stefanović S, Rice DW, Palmer JD, Soltis PS. Genome-scale data, angiosperm relationships, and "ending incongruence": a cautionary tale in phylogenetics. Trends in Plant Science. 9: 477-83. PMID 15465682 DOI: 10.1016/J.Tplants.2004.08.008  0.722
2004 Buzgo M, Soltis DE, Soltis PS, Ma H. Towards a comprehensive integration of morphological and genetic studies of floral development. Trends in Plant Science. 9: 164-73. PMID 15063866 DOI: 10.1016/J.Tplants.2004.02.003  0.68
2004 Kim S, Soltis DE, Soltis PS, Zanis MJ, Suh Y. Phylogenetic relationships among early-diverging eudicots based on four genes: were the eudicots ancestrally woody? Molecular Phylogenetics and Evolution. 31: 16-30. PMID 15019605 DOI: 10.1016/J.Ympev.2003.07.017  0.82
2004 Davies TJ, Barraclough TG, Chase MW, Soltis PS, Soltis DE, Savolainen V. Darwin's abominable mystery: Insights from a supertree of the angiosperms. Proceedings of the National Academy of Sciences of the United States of America. 101: 1904-9. PMID 14766971 DOI: 10.1073/Pnas.0308127100  0.716
2004 Scheen AC, Brochmann C, Brysting AK, Elven R, Morris A, Soltis DE, Soltis PS, Albert VA. Northern hemisphere biogeography of Cerastium (Caryophyllaceae): Insights from phylogenetic analysis of noncoding plastid nucleotide sequences American Journal of Botany. 91: 943-952. DOI: 10.3732/ajb.91.6.943  0.59
2004 Michelangeli FA, Penneys DS, Giza J, Soltis D, Hils MH, Skean JD. A preliminary phylogeny of the tribe Miconieae (Melastomataceae) based on nrITS sequence data and its implications on inflorescence position Taxon. 53: 279-290. DOI: 10.2307/4135608  0.442
2004 Mavrodiev EV, Edwards CE, Albach DC, Gitzendanner MA, Soltis PS, Soltis DE. Phylogenetic relationships in subtribe Scorzonerinae (Asteraceae: Cichorioideae: Cichorieae) based on ITS sequence data Taxon. 53: 699-712. DOI: 10.2307/4135445  0.83
2004 Koontz JA, Soltis PS, Soltis DE. Using Phylogeny Reconstruction to Test Hypotheses of Hybrid Origin in Delphinium Section Diedropetala (Ranunculaceae) Systematic Botany. 29: 345-357. DOI: 10.1600/036364404774195539  0.602
2004 Fishbein M, Soltis DE. Further Resolution of the Rapid Radiation of Saxifragales (Angiosperms, Eudicots) Supported by Mixed-Model Bayesian Analysis Systematic Botany. 29: 883-891. DOI: 10.1600/0363644042450982  0.398
2004 Soltis DE, Soltis PS, Pires JC, Kovarik A, Tate JA, Mavrodiev E. Recent and recurrent polyploidy in Tragopogon (Asteraceae): Cytogenetic, genomic and genetic comparisons Biological Journal of the Linnean Society. 82: 485-501. DOI: 10.1111/J.1095-8312.2004.00335.X  0.657
2004 Buzgo M, Soltis P, Soltis D. Floral Developmental Morphology of Amborella trichopoda (Amborellaceae) International Journal of Plant Sciences. 165: 925-947. DOI: 10.1086/424024  0.612
2004 Li RQ, Chen ZD, Lu AM, Soltis DE, Soltis PS, Manos PS. Phylogenetic relationships in Fagales based on DNA sequences from three genomes International Journal of Plant Sciences. 165: 311-324. DOI: 10.1086/381920  0.667
2004 Soltis DE, Soltis PS, Tate JA. Advances in the study of polyploidy since Plant speciation New Phytologist. 161: 173-191. DOI: 10.1046/J.1469-8137.2003.00948.X  0.664
2003 Soltis DE, Senters AE, Zanis MJ, Kim S, Thompson JD, Soltis PS, Ronse De Craene LP, Endress PK, Farris JS. Gunnerales are sister to other core eudicots: implications for the evolution of pentamery. American Journal of Botany. 90: 461-70. PMID 21659139 DOI: 10.3732/Ajb.90.3.461  0.81
2003 Hilu KW, Borsch T, Müller K, Soltis DE, Soltis PS, Savolainen V, Chase MW, Powell MP, Alice LA, Evans R, Sauquet H, Neinhuis C, Slotta TA, Rohwer JG, Campbell CS, et al. Angiosperm phylogeny based on matK sequence information. American Journal of Botany. 90: 1758-76. PMID 21653353 DOI: 10.3732/Ajb.90.12.1758  0.738
2003 Soltis DE, Soltis PS, Bennett MD, Leitch IJ. Evolution of genome size in the angiosperms. American Journal of Botany. 90: 1596-603. PMID 21653334 DOI: 10.3732/Ajb.90.11.1596  0.639
2003 Soltis DE, Soltis PS. The role of phylogenetics in comparative genetics. Plant Physiology. 132: 1790-800. PMID 12913137 DOI: 10.1104/Pp.103.022509  0.703
2003 Senters AE, Soltis DE. Phylogenetic Relationships in Ribes (Grossulariaceae) Inferred from ITS Sequence Data Taxon. 52: 51. DOI: 10.2307/3647301  0.441
2003 Zanis MJ, Soltis PS, Qiu YL, Zimmer E, Soltis DE. Phylogenetic Analyses and Perianth Evolution in Basal Angiosperms Annals of the Missouri Botanical Garden. 90: 129. DOI: 10.2307/3298579  0.808
2003 Zanis MJ, Soltis PS, Qiu YL, Zimmer E, Soltis DE. Phylogenetic analyses and perianth evolution in basal angiosperms Annals of the Missouri Botanical Garden. 90: 129-150. DOI: 10.2307/3298579  0.825
2003 Soltis DE, Soltis PS. Applying the Bootstrap in Phylogeny Reconstruction Statistical Science. 18: 256-267. DOI: 10.1214/Ss/1063994980  0.555
2003 Ronse De Craene L, Soltis P, Soltis D. Evolution of Floral Structures in Basal Angiosperms International Journal of Plant Sciences. 164: S329-S363. DOI: 10.1086/377063  0.619
2003 Soltis D, Fishbein M, Kuzoff R. Reevaluating the Evolution of Epigyny: Data from Phylogenetics and Floral Ontogeny International Journal of Plant Sciences. 164: S251-S264. DOI: 10.1086/376876  0.325
2003 Qiu-Yun Xiang (, Moody ML, Soltis DE, Fan C, Soltis PS. Erratum to “Relationships within Cornales and circumscription of Cornaceae—matK and rbcL sequence data and effects of outgroups and long branches” [Mol. Phylogenet. Evol. 24 (2002) 35–57] Molecular Phylogenetics and Evolution. 26: 527. DOI: 10.1016/S1055-7903(03)00044-7  0.613
2002 Soltis DE, Soltis PS, Zanis MJ. Phylogeny of seed plants based on evidence from eight genes. American Journal of Botany. 89: 1670-81. PMID 21665594 DOI: 10.3732/Ajb.89.10.1670  0.819
2002 Savolainen V, Chase MW, Salamin N, Soltis DE, Soltis PS, López AJ, Fédrigo O, Naylor GJ. Phylogeny reconstruction and functional constraints in organellar genomes: plastid atpB and rbcL sequences versus animal mitochondrion. Systematic Biology. 51: 638-47. PMID 12228005 DOI: 10.1080/10635150290102348  0.658
2002 Xiang JQ, Moody ML, Soltis DE, Fan C, Soltis PS, Fan Cz. Relationships within Cornales and circumscription of Cornaceae-matK and rbcL sequence data and effects of outgroups and long branches. Molecular Phylogenetics and Evolution. 24: 35-57. PMID 12128027 DOI: 10.1016/S1055-7903(02)00267-1  0.659
2002 Fishbein M, Hibsch-Jetter C, Soltis DE, Hufford L. Phylogeny of Saxifragales (angiosperms, eudicots): analysis of a rapid, ancient radiation. Systematic Biology. 50: 817-47. PMID 12116635 DOI: 10.1080/106351501753462821  0.4
2002 Mort ME, Soltis PS, Soltis DE, Mabry ML. Comparison of three methods for estimating internal support on phylogenetic trees. Systematic Biology. 49: 160-71. PMID 12116478 DOI: 10.1080/10635150050207456  0.621
2002 Zanis MJ, Soltis DE, Soltis PS, Mathews S, Donoghue MJ. The root of the angiosperms revisited. Proceedings of the National Academy of Sciences of the United States of America. 99: 6848-53. PMID 12011443 DOI: 10.1073/Pnas.092136399  0.808
2002 Soltis PS, Soltis DE, Savolainen V, Crane PR, Barraclough TG. Rate heterogeneity among lineages of tracheophytes: integration of molecular and fossil data and evidence for molecular living fossils. Proceedings of the National Academy of Sciences of the United States of America. 99: 4430-5. PMID 11917101 DOI: 10.1073/Pnas.032087199  0.612
2002 Soltis DE, Soltis PS, Albert VA, Oppenheimer DG, DePamphilis CW, Ma H, Frohlich MW, Theißen G. Missing links: The genetic architecture of flower and floral diversification Trends in Plant Science. 7: 22-31. PMID 11804823 DOI: 10.1016/S1360-1385(01)02098-2  0.672
2002 Soltis DE, Hufford L. Ovary Position Diversity in Saxifragaceae: Clarifying the Homology of Epigyny International Journal of Plant Sciences. 163: 277-293. DOI: 10.1086/324528  0.395
2002 Hardig TM, Soltis PS, Soltis DE, Hudson RB. Morphological and Molecular Analysis of Putative Hybrid Speciation in Ceanothus (Rhamnaceae) Systematic Botany. 27: 734-746. DOI: 10.1043/0363-6445-27.4.734  0.658
2002 Mort ME, Soltis DE, Soltis PS, Francisco-Ortega J, Santos-Guerra A. Phylogenetics and evolution of the Macaronesian clade of Crassulaceae inferred from nuclear and chloroplast sequence data Systematic Botany. 27: 271-288. DOI: 10.1043/0363-6445-27.2.271  0.674
2001 Mort ME, Soltis DE, Soltis PS, Francisco-Ortega J, Santos-Guerra A. Phylogenetic relationships and evolution of Crassulaceae inferred from matK sequence data. American Journal of Botany. 88: 76-91. PMID 11159129  0.652
2001 Soltis DE, Kuzoff RK, Mort ME, Zanis M, Fishbein M, Hufford L, Koontz J, Arroyo MK. Elucidating Deep-Level Phylogenetic Relationships in Saxifragaceae Using Sequences for Six Chloroplastic and Nuclear DNA Regions Annals of the Missouri Botanical Garden. 88: 669. DOI: 10.2307/3298639  0.784
2001 Albach DC, Soltis PS, Soltis DE, Olmstead RG. Phylogenetic Analysis of Asterids Based on Sequences of Four Genes Annals of the Missouri Botanical Garden. 88: 163. DOI: 10.2307/2666224  0.748
2001 Mort ME, Soltis DE, Soltis PS, Francisco-Ortega J, Santos-Guerra A. Phylogenetic relationships and evolution of Crassulaceae inferred frommatKsequence data American Journal of Botany. 88: 76-91. DOI: 10.2307/2657129  0.682
2001 Soltis DE, Tago-Nakazawa M, Xiang Q, Kawano S, Murata J, Wakabayashi M, Hibsch-Jetter C. Phylogenetic relationships and evolution in Chrysosplenium (Saxifragaceae) based on matK sequence data American Journal of Botany. 88: 883-893. DOI: 10.2307/2657040  0.453
2001 Moody ML, Hufford L, Soltis DE, Soltis PS. Phylogenetic relationships of Loasaceae subfamily Gronovioideae inferred from mat K and ITS sequence data American Journal of Botany. 88: 326-336. DOI: 10.2307/2657022  0.674
2001 Kuzoff RK, Hufford L, Soltis DE. Structural homology and developmental transformations associated with ovary diversification in Lithophragma (Saxifragaceae) American Journal of Botany. 88: 196-205. DOI: 10.2307/2657010  0.348
2001 Albach DC, Soltis DE, Chase MW, Soltis PS. Phylogenetic placement of the enigmatic angiosperm Hydrostachys Taxon. 50: 781-805. DOI: 10.2307/1223707  0.802
2001 Soltis PS, Soltis DE. Molecular systematics: assembling and using the Tree of Life Taxon. 50: 663-677. DOI: 10.2307/1223700  0.672
2001 Xiang Q(, Soltis DE. Dispersal‐Vicariance Analyses of Intercontinental Disjuncts: Historical Biogeographical Implications for Angiosperms in the Northern Hemisphere International Journal of Plant Sciences. 162. DOI: 10.1086/323332  0.32
2001 Hufford L, Moody ML, Soltis DE. A phylogenetic analysis of Hydrangeaceae based on sequences of the plastid gene matK and their combination with rbcL and morphological data International Journal of Plant Sciences. 162: 835-846. DOI: 10.1086/320789  0.439
2000 Savolainen V, Chase MW, Hoot SB, Morton CM, Soltis DE, Bayer C, Fay MF, de Bruijn AY, Sullivan S, Qiu YL. Phylogenetics of flowering plants based on combined analysis of plastid atpB and rbcL gene sequences. Systematic Biology. 49: 306-62. PMID 12118410 DOI: 10.1093/Sysbio/49.2.306  0.605
2000 Xiang QY, Soltis DE, Soltis PS, Manchester SR, Crawford DJ. Timing the eastern Asian-eastern North American floristic disjunction: molecular clock corroborates paleontological estimates. Molecular Phylogenetics and Evolution. 15: 462-72. PMID 10860654 DOI: 10.1006/Mpev.2000.0766  0.668
2000 Savolainen V, Fay MF, Albach DC, Backlund A, van der Bank M, Cameron KM, Johnson SA, Lledo MD, Pintaud J-, Powell M, Sheahan MC, Soltis DE, Soltis PS, Weston P, Whitten WM, et al. Phylogeny of the Eudicots: A Nearly Complete Familial Analysis Based on rbcL Gene Sequences Kew Bulletin. 55: 257. DOI: 10.2307/4115644  0.777
2000 Hardig TM, Soltis PS, Soltis DE. Diversification of the North American shrub genusCeanothus(Rhamnaceae): conflicting phylogenies from nuclear ribosomal DNA and chloroplast DNA American Journal of Botany. 87: 108-123. DOI: 10.2307/2656689  0.667
2000 SOLTIS DE, SOLTIS PS, CHASE MW, MORT ME, ALBACH DC, ZANIS M, SAVOLAINEN V, HAHN WH, HOOT SB, FAY MF, AXTELL M, SWENSEN SM, PRINCE LM, KRESS WJ, NIXON KC, et al. Angiosperm phylogeny inferred from 18S rDNA, rbcL, and atpB sequences Botanical Journal of the Linnean Society. 133: 381-461. DOI: 10.1111/J.1095-8339.2000.Tb01588.X  0.824
2000 Qiu Y, Lee J, Bernasconi‐Quadroni F, Soltis DE, Soltis PS, Zanis M, Zimmer EA, Chen Z, Savolainen V, Chase MW. Phylogeny of Basal Angiosperms: Analyses of Five Genes from Three Genomes International Journal of Plant Sciences. 161: S3-S27. DOI: 10.1086/317584  0.812
2000 Soltis PS, Soltis DE, Zanis MJ, Kim S. Basal Lineages of Angiosperms: Relationships and Implications for Floral Evolution International Journal of Plant Sciences. 161: S97-S107. DOI: 10.1086/317581  0.826
2000 Qiu Y, Lee J, Bernasconi-Quadroni F, Soltis DE, Soltis PS, Zanis M, Zimmer EA, Chen Z, Savolainen V, Chase MW. Erratum: The earliest angiosperms: evidence from mitochondrial, plastid and nuclear genomes Nature. 405: 101-101. DOI: 10.1038/35011110  0.794
2000 Soltis PS, Soltis DE. G. Ledyard Stebbins (1906–2000) Taxon. 49: 581-583. DOI: 10.1002/J.1996-8175.2000.Tb01333.X  0.605
1999 Conti E, Soltis DE, Hardig TM, Schneider J. Phylogenetic Relationships of the Silver Saxifrages (Saxifraga, Sect. Ligulatae Haworth): Implications for the Evolution of Substrate Specificity, Life Histories, and Biogeography Molecular Phylogenetics and Evolution. 13: 536-555. PMID 10620412 DOI: 10.1006/Mpev.1999.0673  0.416
1999 Soltis PS, Soltis DE, Wolf PG, Nickrent DL, Chaw SM, Chapman RL. The phylogeny of land plants inferred from 18S rDNA sequences: pushing the limits of rDNA signal? Molecular Biology and Evolution. 16: 1774-84. PMID 10605118 DOI: 10.1093/Oxfordjournals.Molbev.A026089  0.682
1999 Qiu YL, Lee J, Bernasconi-Quadroni F, Soltis DE, Soltis PS, Zanis M, Zimmer EA, Chen Z, Savolainen V, Chase MW. The earliest angiosperms: evidence from mitochondrial, plastid and nuclear genomes. Nature. 402: 404-7. PMID 10586879 DOI: 10.1038/46536  0.834
1999 Soltis PS, Soltis DE, Chase MW. Angiosperm phylogeny inferred from multiple genes as a tool for comparative biology. Nature. 402: 402-4. PMID 10586878 DOI: 10.1038/46528  0.763
1999 Soltis DE, Soltis PS. Polyploidy: recurrent formation and genome evolution Trends in Ecology and Evolution. 14: 348-352. PMID 10441308 DOI: 10.1016/S0169-5347(99)01638-9  0.688
1999 Soltis DE, Mort ME, Soltis PS, Hibsch-Jetter C, Zimmer EA, Morgan D. Phylogenetic relationships of the enigmatic angiosperm family Podostemaceae inferred from 18S rDNA and rbcL sequence data. Molecular Phylogenetics and Evolution. 11: 261-72. PMID 10191070 DOI: 10.1006/Mpev.1998.0577  0.662
1999 Xiang QY, Soltis DE, Soltis PS. The eastern Asian and eastern and western North American floristic disjunction: congruent phylogenetic patterns in seven diverse genera. Molecular Phylogenetics and Evolution. 10: 178-90. PMID 9878229 DOI: 10.1006/Mpev.1998.0524  0.662
1999 Kuzoff RK, Soltis DE, Hufford L, Soltis PS. Phylogenetic Relationships Within Lithophragma (Saxifragaceae): Hybridization, Allopolyploidy, and Ovary Diversification Systematic Botany. 24: 598. DOI: 10.2307/2419645  0.664
1999 Mort ME, Soltis DE. Phylogenetic Relationships and the Evolution of Ovary Position in Saxifraga section Micranthes Systematic Botany. 24: 139. DOI: 10.2307/2419545  0.392
1999 Les DH, Schneider EL, Padgett DJ, Soltis PS, Soltis DE, Zanis M. Phylogeny, Classification and Floral Evolution of Water Lilies (Nymphaeaceae; Nymphaeales): A Synthesis of Non-molecular, rbcL, matK, and 18S rDNA Data Systematic Botany. 24: 28. DOI: 10.2307/2419384  0.798
1999 Segraves KA, Thompson JN, Soltis PS, Soltis DE. Multiple origins of polyploidy and the geographic structure of Heuchera grossulariifolia Molecular Ecology. 8: 253-262. DOI: 10.1046/J.1365-294X.1999.00562.X  0.667
1999 Johnson LA, Soltis DE, Soltis PS. Phylogenetic relationships ofPolemoniaceae inferred from 18S ribosomal DNA sequences Plant Systematics and Evolution. 214: 65-89. DOI: 10.1007/Bf00985732  0.618
1999 Koontz JA, Soltis DE. DNA sequence data reveal polyphyly of Brexioideae (Brexiaceae; Saxifragaceae sensu lato) Plant Systematics and Evolution. 219: 199-208. DOI: 10.1007/Bf00985579  0.401
1998 Soltis DE, Soltis PS, Mort ME, Chase MW, Savolainen V, Hoot SB, Morton CM. Inferring complex phylogenies using parsimony: an empirical approach using three large DNA data sets for angiosperms. Systematic Biology. 47: 32-42. PMID 12064239 DOI: 10.1080/106351598261012  0.663
1998 Kuzoff RK, Sweere JA, Soltis DE, Soltis PS, Zimmer EA. The phylogenetic potential of entire 26S rDNA sequences in plants. Molecular Biology and Evolution. 15: 251-63. PMID 9501492 DOI: 10.1093/Oxfordjournals.Molbev.A025922  0.671
1998 Brochmann C, Xiang Q, Brunsfeld SJ, Soltis DE, Soltis PS. Molecular evidence for polyploid origins in Saxifraga (Saxifragaceae): the narrow arctic endemic S. svalbardensis and its widespread allies American Journal of Botany. 85: 135-143. DOI: 10.2307/2446562  0.608
1998 Rodman JE, Soltis PS, Soltis DE, Sytsma KJ, Karol KG. Parallel evolution of glucosinolate biosynthesis inferred from congruent nuclear and plastid gene phylogenies. American Journal of Botany. 85: 997-1006. DOI: 10.2307/2446366  0.649
1998 Xiang Q, Soltis DE, Soltis PS. Phylogenetic relationships of Cornaceae and close relatives inferred from matK and rbcL sequences American Journal of Botany. 85: 285-297. DOI: 10.2307/2446317  0.666
1998 Cook LM, Soltis PS, Brunsfeld SJ, Soltis DE. Multiple independent formations of Tragopogon tetraploids (Asteraceae): Evidence from RAPD markers Molecular Ecology. 7: 1293-1302. DOI: 10.1046/J.1365-294X.1998.00453.X  0.656
1997 Plunkett GM, Soltis DE, Soltis PS. Clarification of the relationship between Apiaceae and Araliaceae based on matK and rbcL sequence data American Journal of Botany. 84: 565-580. DOI: 10.2307/2446032  0.667
1997 Soltis DE, Soltis PS. Phylogenetic relationships in Saxifragaceae sensu lato: a comparison of topologies based on 18S rDNA and rbcL sequences American Journal of Botany. 84: 504-522. DOI: 10.2307/2446027  0.661
1997 Soltis DE, Soltis PS, Nickrent DL, Johnson LA, Hahn WJ, Hoot SB, Sweere JA, Kuzoff RK, Kron KA, Chase MW, Swensen SM, Zimmer EA, Chaw SM, Gillespie LJ, Kress WJ, et al. Angiosperm phylogeny inferred from 18S ribosomal DNA sequences Annals of the Missouri Botanical Garden. 84: 1-49. DOI: 10.2307/2399952  0.667
1997 Soltis DE. Avenues for Plants Science. 277: 326-327. DOI: 10.1126/Science.277.5324.326  0.325
1997 Hibsch-Jetter C, Soltis DE, Macfarlane TD. Phylogenetic analysis ofEremosyne pectinata (Saxifragaceae s. l.) based onrbcL sequence data Plant Systematics and Evolution. 204: 225-232. DOI: 10.1007/Bf00989207  0.32
1997 Soltis DE, Gitzendanner MA, Strenge DD, Soltis PS. Chloroplast DNA intraspecific phylogeography of plants from the Pacific Northwest of North America Plant Systematics and Evolution. 206: 353-373. DOI: 10.1007/Bf00987957  0.791
1996 Soltis DE, Johnson LA, Looney C. Discordance Between ITS and Chloroplast Topologies in the Boykinia Group (Saxifragaceae) Systematic Botany. 21: 169. DOI: 10.2307/2419746  0.398
1996 Bayer RJ, Hufford L, Soltis DE. Phylogenetic Relationships in Sarraceniaceae Based on rbcL and ITS Sequences Systematic Botany. 21: 121. DOI: 10.2307/2419743  0.412
1996 Soltis PS, Soltis DE, Weller SG, Sakai AK, Wagner WL. Molecular Phylogenetic Analysis of the Hawaiian Endemics Schiedea and Alsinidendron (Caryophyllaceae) Systematic Botany. 21: 365. DOI: 10.2307/2419665  0.657
1996 Xiang Q, Brunsfeld SJ, Soltis DE, Soltis PS. Phylogenetic Relationships in Cornus Based on Chloroplast DNA Restriction Sites: Implications for Biogeography and Character Evolution Systematic Botany. 21: 515. DOI: 10.2307/2419612  0.652
1996 Plunkett GM, Soltis DE, Soltis PS. Evolutionary Patterns in Apiaceae: Inferences Based on matK Sequence Data Systematic Botany. 21: 477. DOI: 10.2307/2419610  0.681
1996 Noyes RD, Soltis DE. Genotypic variation in agamospermousErigeron compositus(Asteraceae) American Journal of Botany. 83: 1292-1303. DOI: 10.1002/J.1537-2197.1996.Tb13913.X  0.32
1996 Johnson LA, Schultz JL, Soltis DE, Soltis PS. Monophyly and generic relationships of polemoniaceae based on mat K Sequences American Journal of Botany. 83: 1207-1224. DOI: 10.1002/J.1537-2197.1996.Tb13902.X  0.673
1996 Bayer RJ, Soltis DE, Soltis PS. Phylogenetic inferences in Antennaria (Asteraceae: Gnaphalieae: Cassiniinae) based on sequences from Nuclear Ribosomal DNA internal transcribed spacers (ITS) American Journal of Botany. 83: 516-527. DOI: 10.1002/J.1537-2197.1996.Tb12732.X  0.673
1996 Plunkett GM, Soltis DE, Soltis PS. Higher level relationships of Apiales (Apiaceae and Araliaceae) based on phylogenetic analysis of rbc L sequences American Journal of Botany. 83: 499-515. DOI: 10.1002/J.1537-2197.1996.Tb12731.X  0.655
1996 Soltis DE, Kuzoff RK, Conti E, Gornall R, Ferguson K. mat K and rbc L gene sequence data indicate that Saxifraga (Saxifragaceae) is polyphyletic American Journal of Botany. 83: 371-382. DOI: 10.1002/J.1537-2197.1996.Tb12717.X  0.443
1995 Soltis DE, Soltis PS, Morgan DR, Swensen SM, Mullin BC, Dowd JM, Martin PG. Chloroplast gene sequence data suggest a single origin of the predisposition for symbiotic nitrogen fixation in angiosperms. Proceedings of the National Academy of Sciences of the United States of America. 92: 2647-51. PMID 7708699 DOI: 10.1073/Pnas.92.7.2647  0.67
1995 Wolf PG, Soltis PS, Soltis DE. Phylogenetic relationships of dennstaedtioid ferns: evidence from rbcL sequences. Molecular Phylogenetics and Evolution. 3: 383-92. PMID 7697195 DOI: 10.1006/Mpev.1994.1044  0.664
1995 Soltis DE, Soltis PS. The dynamic nature of polyploid genomes. Proceedings of the National Academy of Sciences of the United States of America. 92: 8089-91. PMID 7667249 DOI: 10.1073/Pnas.92.18.8089  0.644
1995 Noyes RD, Soltis DE, Soltis PS. Genetic and Cytological Investigations in Sexual Erigeron compositus (Asteraceae) Systematic Botany. 20: 132. DOI: 10.2307/2419445  0.566
1995 Haufler CH, Soltis DE, Soltis PS. Phylogeny of the Polypodium vulgare Complex: Insights from Chloroplast DNA Restriction Site Data Systematic Botany. 20: 110. DOI: 10.2307/2419443  0.642
1995 Nickrent DL, Soltis DE. A Comparison of Angiosperm Phylogenies from Nuclear 18S rDNA and rbcL Sequences Annals of the Missouri Botanical Garden. 82: 208. DOI: 10.2307/2399878  0.35
1995 Johnson LA, Soltis DE. Phylogenetic Inference in Saxifragaceae Sensu Stricto and Gilia (Polemoniaceae) Using matK Sequences Annals of the Missouri Botanical Garden. 82: 149. DOI: 10.2307/2399875  0.359
1995 Plunkett GM, Soltis DE, Soltis PS, Brooks RE. Phylogenetic relationships between Juncaceae and Cyperaceae: insights from rbc L sequence data American Journal of Botany. 82: 520-525. DOI: 10.1002/J.1537-2197.1995.Tb15673.X  0.642
1995 Soltis DE, Xiang Q, Hufford L. Relationships and evolution of Hydrangeaceae based onRBCl sequence data American Journal of Botany. 82: 504-514. DOI: 10.1002/J.1537-2197.1995.Tb15671.X  0.431
1995 Soltis PS, Plunkett GM, Novak SJ, Soltis DE. GENETIC VARIATION INTRAGOPOGONSPECIES: ADDITIONAL ORIGINS OF THE ALLOTETRAPLOIDST. MIRUSANDT. MISCELLUS(COMPOSITAE) American Journal of Botany. 82: 1329-1341. DOI: 10.1002/J.1537-2197.1995.Tb12666.X  0.588
1995 Susanna A, Jacas NG, Soltis DE, Soltis PS. Phylogenetic relationships in tribeCardueae(Asteraceae)based onITSsequences American Journal of Botany. 82: 1056-1068. DOI: 10.1002/J.1537-2197.1995.Tb11571.X  0.679
1994 Johnson LA, Soltis DE. matK DNA Sequences and Phylogenetic Reconstruction in Saxifragaceae s. str. Systematic Botany. 19: 143. DOI: 10.2307/2419718  0.42
1994 Brunsfeld SJ, Soltis PS, Soltis DE, Gadek PA, Quinn CJ, Strenge DD, Ranker TA. Phylogenetic Relationships Among the Genera of Taxodiaceae and Cupressaceae: Evidence from rbcL Sequences Systematic Botany. 19: 253. DOI: 10.2307/2419600  0.636
1994 Richter TS, Soltis PS, Soltis DE. Genetic variation within and among populations of the narrow endemic, delphinium viridescens (Ranunculaceae) American Journal of Botany. 81: 1070-1076. DOI: 10.1002/J.1537-2197.1994.Tb15596.X  0.629
1994 Morgan DR, Soltis DE, Robertson KR. Systematic and evolutionary implications ofrbcL sequence variation in Rosaceae American Journal of Botany. 81: 890-903. DOI: 10.1002/J.1537-2197.1994.Tb15570.X  0.435
1994 Mayer MS, Soltis PS, Soltis DE. The evolution of theStreptanthus glandulosuscomplex(Cruciferae): genetic divergence and gene flow in serpentine endemics American Journal of Botany. 81: 1288-1299. DOI: 10.1002/J.1537-2197.1994.Tb11451.X  0.639
1993 Wolf PG, Soltis PS, Soltis DE. Phylogenetic Significance of Chloroplast DNA Restriction Site Varition in the Ipomopsis aggregata Complex and Related Species (Polemoniaceae) Systematic Botany. 18: 652. DOI: 10.2307/2419539  0.658
1993 Holsinger KE, Soltis PS, Soltis DE, Doyle JJ. Molecular Systematics of Plants. Systematic Botany. 18: 539. DOI: 10.2307/2419426  0.6
1993 Xiang Q, Soltis DE, Morgan DR, Soltis PS. Phylogenetic Relationships of Cornus L. Sensu Lato and Putative Relatives Inferred from rbcL Sequence Data Annals of the Missouri Botanical Garden. 80: 723. DOI: 10.2307/2399856  0.649
1993 Morgan DR, Soltis DE. Phylogenetic Relationships Among Members of Saxifragaceae Sensu Lato Based on rbcL Sequence Data Annals of the Missouri Botanical Garden. 80: 631. DOI: 10.2307/2399851  0.462
1993 Soltis DE, Soltis PS, Rieseberg LH. Molecular Data and the Dynamic Nature of Polyploidy Critical Reviews in Plant Sciences. 12: 243-273. DOI: 10.1080/07352689309701903  0.663
1993 Soltis PS, Soltis DE. Ancient DNA: Prospects and limitations New Zealand Journal of Botany. 31: 203-209. DOI: 10.1080/0028825X.1993.10419497  0.59
1993 Soltis DE, Morgan DR, Grable A, Soltis PS, Kuzoff R. Molecular systematics of Saxifragaceae sensu stricto American Journal of Botany. 80: 1056-1081. DOI: 10.1002/J.1537-2197.1993.Tb15333.X  0.553
1992 Soltis PS, Soltis DE, Smiley CJ. An rbcL sequence from a Miocene Taxodium (bald cypress) Proceedings of the National Academy of Sciences of the United States of America. 89: 449-451. PMID 1729716 DOI: 10.1073/Pnas.89.1.449  0.627
1992 Palmer JD, Soltis D, Soltis P. Large size and complex structure of mitochondrial DNA in two nonflowering land plants. Current Genetics. 21: 125-9. PMID 1568256 DOI: 10.1007/Bf00318471  0.654
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