Kyoko Kojima, Ph.D. - Related publications

2009 Microbiology University of Alabama, Birmingham, Birmingham, AL, United States 
Molecular Biology, Oncology
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Hutchinson C, Piehowski P, Sanford J, Gritsenko M, Hansen J, Moore R, Qian WJ, Adkins J. Adapting a high-throughput clinical sample pipeline for proteomic characterization of adipose tissue. Journal of Biomolecular Techniques : Jbt. 31: S23-S24. PMID 32831730   
2020 Nweke EE, Naicker P, Aron S, Stoychev S, Devar J, Tabb DL, Omoshoro-Jones J, Smith M, Candy G. SWATH-MS based proteomic profiling of pancreatic ductal adenocarcinoma tumours reveals the interplay between the extracellular matrix and related intracellular pathways. Plos One. 15: e0240453. PMID 33048956 DOI: 10.1371/journal.pone.0240453   
2020 Shirani I, Zhang H, Zhao G, Lu S, Marawan MA, Dawood A, Chen Y, Chen X, Chen J, Hu C, Chen H, Guo A. In Silico Identification of Novel Immunogenic Secreted Proteins of from Secretome Data and Experimental Verification. Pathogens (Basel, Switzerland). 9. PMID 32967149 DOI: 10.3390/pathogens9090770   
2020 Jiang L, Wang M, Lin S, Jian R, Li X, Chan J, Dong G, Fang H, Robinson AE, , Snyder MP. A Quantitative Proteome Map of the Human Body. Cell. PMID 32916130 DOI: 10.1016/j.cell.2020.08.036   
2020 Ramesh P, Nagarajan V, Khanchandani V, Desai VK, Niranjan V. Proteomic variations of esophageal squamous cell carcinoma revealed by combining RNA-seq proteogenomics and G-PTM search strategy. Heliyon. 6: e04813. PMID 32913912 DOI: 10.1016/j.heliyon.2020.e04813   
2020 Chen CH, Chen YC, Huang CH, Wang SH, Lin JS, Lo SC, Huang CC. Exploring Potential Proteomic Biomarkers for Prognosis of Infective Endocarditis through Profiled Autoantibodies by an Immunomics Protein Array Technique. The Heart Surgery Forum. 23: E555-E573. PMID 32990583 DOI: 10.1532/hsf.3017   
2020 Will JM, Erbacher C, Sperling M, Karst U. A mass spectrometry-based approach gives new insight into organotin-protein interactions. Metallomics : Integrated Biometal Science. PMID 32930317 DOI: 10.1039/d0mt00171f   
2020 Bosch JA, Chen CL, Perrimon N. Proximity-dependent labeling methods for proteomic profiling in living cells: An update. Wiley Interdisciplinary Reviews. Developmental Biology. e392. PMID 32909689 DOI: 10.1002/wdev.392   
2020 Lamb JR, Jennings LL, Gudmundsdottir V, Gudnason V, Emilsson V. It's in Our Blood: A Glimpse of Personalized Medicine. Trends in Molecular Medicine. PMID 32988739 DOI: 10.1016/j.molmed.2020.09.003   
2020 Huang W, Yu J, Liu T, Tudor G, Defnet AE, Zalesak S, Kumar P, Booth C, Farese AM, MacVittie TJ, Kane MA. Proteomic Evaluation of the Natural History of the Acute Radiation Syndrome of the Gastrointestinal Tract in a Nonhuman Primate Model of Partial-body Irradiation with Minimal Bone Marrow Sparing Includes Dysregulation of the Retinoid Pathway. Health Physics. PMID 32947489 DOI: 10.1097/HP.0000000000001351   
2020 Lv M, Cui C, Chen P, Li Z. Identification of osteoporosis markers through bioinformatic functional analysis of serum proteome. Medicine. 99: e22172. PMID 32991410 DOI: 10.1097/MD.0000000000022172   
2020 Lv M, Cui C, Chen P, Li Z. Identification of osteoporosis markers through bioinformatic functional analysis of serum proteome. Medicine. 99: e22172. PMID 32991410 DOI: 10.1097/MD.0000000000022172   
2020 Sigdel TK, Piehowski PD, Roy S, Liberto J, Hansen JR, Swensen AC, Zhao R, Zhu Y, Rashmi P, Schroeder A, Damm I, Sur S, Luo J, Yang Y, Qian WJ, ... , et al. Near-Single-Cell Proteomics Profiling of the Proximal Tubular and Glomerulus of the Normal Human Kidney. Frontiers in Medicine. 7: 499. PMID 33072769 DOI: 10.3389/fmed.2020.00499   
2020 Sánchez-Jiménez MM, de la Cuesta Zuluaga JJ, Garcia-Montoya GM, Dabral N, Alzate JF, Vemulapalli R, Olivera-Angel M. Diagnosis of human and canine infection: development and evaluation of indirect enzyme-linked immunosorbent assays using recombinant proteins. Heliyon. 6: e04393. PMID 32685723 DOI: 10.1016/j.heliyon.2020.e04393   
2020 Kmeťová Sivoňová M, Tatarková Z, Jurečeková J, Kliment J, Híveš M, Lichardusová L, Kaplán P. Differential profiling of prostate tumors versus benign prostatic tissues by using a 2DE-MALDI-TOF-based proteomic approach. Neoplasma. PMID 32977723 DOI: 10.4149/neo_2020_200611N625   
2020 Ferdoushi A, Li X, Griffin N, Faulkner S, Jamaluddin MFB, Gao F, Jiang CC, van Helden DF, Tanwar PS, Jobling P, Hondermarck H. Schwann Cell Stimulation of Pancreatic Cancer Cells: A Proteomic Analysis. Frontiers in Oncology. 10: 1601. PMID 32984024 DOI: 10.3389/fonc.2020.01601   
2020 Zheng T, Yang Y, Castañeda CA. Structure, dynamics and functions of UBQLNs: at the crossroads of protein quality control machinery. The Biochemical Journal. 477: 3471-3497. PMID 32965492 DOI: 10.1042/BCJ20190497   
2020 Landegren U, Hammond M. Cancer diagnostics based on plasma protein biomarkers: hard times but great expectations. Molecular Oncology. PMID 33012111 DOI: 10.1002/1878-0261.12809   
2020 Liu SY, Yuan D, Sun RJ, Zhu JJ, Shan NN. Significant reductions in apoptosis-related proteins (HSPA6, HSPA8, ITGB3, YWHAH, and PRDX6) are involved in immune thrombocytopenia. Journal of Thrombosis and Thrombolysis. PMID 33047245 DOI: 10.1007/s11239-020-02310-5   
2020 Faktor J, Grasso G, Zavadil F, Kurkowiak M, Mayordomo MY, Kote S, Singh A, Ruidong L, O'Neill JR, Muller P, Goodlett D, Vojtesek B, Hupp T. The effects of p53 gene inactivation on mutant proteome expression in a human melanoma cell model. Biochimica Et Biophysica Acta. General Subjects. 129722. PMID 32866596 DOI: 10.1016/j.bbagen.2020.129722   
2020 Yang H, Guo J, Jin W, Chang C, Guo X, Xu C. A combined proteomic and metabolomic analyses of the priming phase during rat liver regeneration. Archives of Biochemistry and Biophysics. 108567. PMID 32898568 DOI: 10.1016/   
2020 Deighan WI, Winton VJ, Melani RD, Anderson LC, McGee JP, Schachner LF, Barnidge D, Murray D, Alexander HD, Gibson DS, Deery MJ, McNicholl FP, McLaughlin J, Kelleher NL, Thomas PM. Development of novel methods for non-canonical myeloma protein analysis with an innovative adaptation of immunofixation electrophoresis, native top-down mass spectrometry, and middle-down de novo sequencing. Clinical Chemistry and Laboratory Medicine. PMID 33079696 DOI: 10.1515/cclm-2020-1072   
2020 Rinschen MM, Saez-Rodriguez J. The tissue proteome in the multi-omic landscape of kidney disease. Nature Reviews. Nephrology. PMID 33028957 DOI: 10.1038/s41581-020-00348-5   
2020 Heffner K, Hizal DB, Majewska NI, Kumar S, Dhara VG, Zhu J, Bowen M, Hatton D, Yerganian G, Yerganian A, O'Meally R, Cole R, Betenbaugh M. Expanded Chinese hamster organ and cell line proteomics profiling reveals tissue-specific functionalities. Scientific Reports. 10: 15841. PMID 32985598 DOI: 10.1038/s41598-020-72959-8   
2020 Zhang X, Liu X, Li F, Yue X. The Differential Composition of Whey Proteomes in Hu Sheep Colostrum and Milk during Different Lactation Periods. Animals : An Open Access Journal From Mdpi. 10. PMID 33019658 DOI: 10.3390/ani10101784   
2020 Song K, Nho CW, Ha IJ, Kim YS. Cellular Target Proteome in Breast Cancer Cells of an Oplopane Sesquiterpenoid Isolated from . Journal of Natural Products. PMID 32881525 DOI: 10.1021/acs.jnatprod.0c00043   
2020 Cohen M, Pignatti E, Dines M, Mory A, Ekhilevitch N, Kolodny R, Flück CE, Tiosano D. In Silico Structural and Biochemical Functional Analysis of a Novel Pathogenic Variant. International Journal of Molecular Sciences. 21. PMID 32824094 DOI: 10.3390/ijms21165857   
2020 Li J, Gao M, Gabriel DW, Liang W, Song L. Secretome-Wide Analysis of Lysine Acetylation in f. sp. Provides Novel Insights Into Infection-Related Proteins. Frontiers in Microbiology. 11: 559440. PMID 33013791 DOI: 10.3389/fmicb.2020.559440   
2020 Lei X, Liu W, Zhao J, You M, Xiong C, Xiong Y, Xiong Y, Yu Q, Bai S, Ma X. Comparative Physiological and Proteomic Analysis Reveals Different Involvement of Proteins during Artificial Aging of Siberian Wildrye Seeds. Plants (Basel, Switzerland). 9. PMID 33076425 DOI: 10.3390/plants9101370   
2020 Carreras M, Espeso EA, Gutierrez-Docio A, Moreno-Fernandez S, Prodanov M, Hernando MD, Melgarejo P, Larena I. Exploring the Extracellular Macromolecular Composition of Crude Extracts of Strain 212 for Elucidation Its Mode of Action as a Biocontrol Agent. Journal of Fungi (Basel, Switzerland). 6. PMID 32785198 DOI: 10.3390/jof6030131   
2020 Shi Y, Yu K, Liang A, Huang Y, Ou F, Wei H, Wan X, Yang Y, Zhang W, Jiang Z. Identification and Analysis of the Tegument Protein and Excretory-Secretory Products of the Carcinogenic Liver Fluke . Frontiers in Microbiology. 11: 555730. PMID 33072014 DOI: 10.3389/fmicb.2020.555730   
2020 Cao H, Zhu X, Chen X, Yang Y, Zhou Q, Xu W, Wang D. Quantitative proteomic analysis to identify differentially expressed proteins in the persistent atrial fibrillation using TMT coupled with nano-LC-MS/MS. American Journal of Translational Research. 12: 5032-5047. PMID 33042404   
2020 Zou X, He J, Zhao D, Zhang M, Xie Y, Dai C, Wang C, Li C. Structural Changes and Evolution of Peptides During Chill Storage of Pork. Frontiers in Nutrition. 7: 151. PMID 33072793 DOI: 10.3389/fnut.2020.00151   
2020 Presslee S, Penkman K, Fischer R, Richards-Slidel E, Southon J, Hospitaleche CA, Collins M, MacPhee R. Assessment of different screening methods for selecting palaeontological bone samples for peptide sequencing. Journal of Proteomics. 103986. PMID 32941991 DOI: 10.1016/j.jprot.2020.103986   
2020 Zhang T, Gygi SP, Paulo JA. Temporal Proteomic Profiling of SH-SY5Y Differentiation with Retinoic Acid Using FAIMS and Real-Time Searching. Journal of Proteome Research. PMID 33054241 DOI: 10.1021/acs.jproteome.0c00614   
2020 Yun T, Hua J, Ye W, Ni Z, Chen L, Zhang C. The phosphoproteomic responses of duck (Cairna moschata) to classical/novel duck reovirus infections in the spleen tissue. Scientific Reports. 10: 15315. PMID 32943705 DOI: 10.1038/s41598-020-72311-0   
2020 McGauran G, Dorris E, Borza R, Morgan N, Shields DC, Matallanas D, Wilson AG, O'Connell DJ. Resolving the Interactome of the Human Immune Regulator MACIR with Enhanced Membrane Protein Preparation and Affinity Proteomics. Proteomics. e2000062. PMID 32864787 DOI: 10.1002/pmic.202000062   
2020 Kandil A, Hanora A, Azab M, Enany S. Proteomic analysis of bacterial communities associated with atopic dermatitis. Journal of Proteomics. 229: 103944. PMID 32822829 DOI: 10.1016/j.jprot.2020.103944   
2020 Zrehen A, Ohayon S, Huttner D, Meller A. On-chip protein separation with single-molecule resolution. Scientific Reports. 10: 15313. PMID 32943759 DOI: 10.1038/s41598-020-72463-z   
2020 Rogers AM, Egan MJ. Autophagy machinery promotes the chaperone-mediated formation and compartmentalization of protein aggregates during appressorium development by the rice blast fungus. Molecular Biology of the Cell. mbcE20010068. PMID 32816646 DOI: 10.1091/mbc.E20-01-0068   
2020 Flores DR, Casados LE, Velasco SF, Ramírez AC, Velázquez G. Comparative study of composition, antioxidant and antimicrobial activity of two adult edible insects from Tenebrionidae family. Bmc Chemistry. 14: 55. PMID 32944716 DOI: 10.1186/s13065-020-00707-0   
2020 Liao C, Zhang M, Cheng X, Li Q, Mao F, Wang X, Yu C, Yu Z, Jia Y, Li J, He L, Zhang C, Li Y, Wu T. Identification and Characterization of the Nuclease Activity of the Extracellular Proteins from Salmonella enterica Serovar Typhimurium. Current Microbiology. PMID 32939640 DOI: 10.1007/s00284-020-02201-1   
2020 Zhou L, Zhou M, Gritsenko MA, Stacey G. Selective Enrichment Coupled with Proteomics to Identify S-Acylated Plasma Membrane Proteins in Arabidopsis. Current Protocols in Plant Biology. 5: e20119. PMID 32976704 DOI: 10.1002/cppb.20119   
2020 Navarrete-Perea J, Gygi SP, Paulo JA. Growth media selection alters the proteome profiles of three model microorganisms. Journal of Proteomics. 231: 104006. PMID 33038513 DOI: 10.1016/j.jprot.2020.104006   
2020 Zhang Y, Chen C, Yu T, Chen T. Proteomic Analysis of Protein Ubiquitination Events in Human Primary and Metastatic Colon Adenocarcinoma Tissues. Frontiers in Oncology. 10: 1684. PMID 33014840 DOI: 10.3389/fonc.2020.01684   
2020 Orwoll ES, Wiedrick J, Nielson CM, Jacobs J, Baker ES, Piehowski P, Petyuk V, Gao Y, Shi T, Smith RD, Bauer DC, Cummings SR, Lapidus J, . Proteomic assessment of serum biomarkers of longevity in older men. Aging Cell. e13253. PMID 33078901 DOI: 10.1111/acel.13253   
2020 Zhang T, Schneider JD, Lin C, Koh J, Chen S. Proteomics data of SNF1-related protein kinase 2.4 interacting proteins revealed by immunoprecipitation-mass spectrometry. Data in Brief. 32: 106326. PMID 33005707 DOI: 10.1016/j.dib.2020.106326   
2020 Liu X, Salokas K, Weldatsadik RG, Gawriyski L, Varjosalo M. Combined proximity labeling and affinity purification-mass spectrometry workflow for mapping and visualizing protein interaction networks. Nature Protocols. PMID 32778839 DOI: 10.1038/s41596-020-0365-x   
2020 Ayers JI, Borchelt DR. Phenotypic diversity in ALS and the role of poly-conformational protein misfolding. Acta Neuropathologica. PMID 32930869 DOI: 10.1007/s00401-020-02222-x   
2020 Zhou J, Song Y, Xing T, Ge L, Ma L, Lu M, Zhong L. Proteomic analysis reveals distinctive protein expression patterns of thrombus in clear cell renal cell carcinoma. Translational Oncology. 14: 100895. PMID 33035959 DOI: 10.1016/j.tranon.2020.100895