Gayathri Srinivasan, Ph.D. - Related publications

2004 Ohio State University, Columbus, Columbus, OH 
Microbiology Biology, Molecular Biology, Biochemistry
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Ayan GB, Park HJ, Gallie J. The birth of a bacterial tRNA gene by large-scale, tandem duplication events. Elife. 9. PMID 33124983 DOI: 10.7554/eLife.57947   
2020 Gamper H, Hou YM. A Label-Free Assay for Aminoacylation of tRNA. Genes. 11. PMID 33036365 DOI: 10.3390/genes11101173   
2020 Hoffer E, Hong S, Sunita S, Maehigashi T, Gonzalez RL, Whitford P, Dunham CM. Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing. Elife. 9. PMID 33016876 DOI: 10.7554/eLife.51898   
2020 Kelly P, Kavoor A, Ibba M. Fine-Tuning of Alanyl-tRNA Synthetase Quality Control Alleviates Global Dysregulation of the Proteome. Genes. 11. PMID 33081015 DOI: 10.3390/genes11101222   
2020 Canu N, Tellier C, Babin M, Thai R, Ajel I, Seguin J, Cinquin O, Vinck R, Moutiez M, Belin P, Cintrat JC, Gondry M. Flexizyme-aminoacylated shortened tRNAs demonstrate that only the aminoacylated acceptor arms of the two tRNA substrates are required for cyclodipeptide synthase activity. Nucleic Acids Research. PMID 33095883 DOI: 10.1093/nar/gkaa903   
2020 Mukhopadhyay S, Deogharia M, Gupta R. Mammalian nuclear TRUB1, mitochondrial TRUB2 and cytoplasmic PUS10 produce conserved pseudouridine 55 in different sets of tRNA. Rna (New York, N.Y.). PMID 33023933 DOI: 10.1261/rna.076810.120   
2020 Wolff P, Villette C, Zumsteg J, Heintz D, Antoine L, Chane-Woon-Ming B, Droogmans L, Grosjean H, Westhof E. Comparative patterns of modified nucleotides in individual tRNA species from a mesophilic and two thermophilic archaea. Rna (New York, N.Y.). PMID 32994183 DOI: 10.1261/rna.077537.120   
2020 Wang J, Wang J, Shin BS, Kim JR, Dever TE, Puglisi JD, Fernández IS. Structural basis for the transition from translation initiation to elongation by an 80S-eIF5B complex. Nature Communications. 11: 5003. PMID 33024099 DOI: 10.1038/s41467-020-18829-3   
2020 Lu X, Huang J, Wu S, Zheng Q, Liu P, Feng H, Su X, Fu H, Xi Q, Wang G. The tRNA-like small noncoding RNA mascRNA promotes global protein translation. Embo Reports. e49684. PMID 33073493 DOI: 10.15252/embr.201949684   
2020 Duncan GA, Dunigan DD, Van Etten JLV. Diversity of tRNA Clusters in the Chloroviruses. Viruses. 12. PMID 33081353 DOI: 10.3390/v12101173   
2020 Cai RJ, Su HW, Li YY, Javid B. Forward Genetics Reveals a Fusion Polypeptide Causes Mistranslation and Rifampicin Tolerance in . Frontiers in Microbiology. 11: 577756. PMID 33072044 DOI: 10.3389/fmicb.2020.577756   
2020 Itani OA, Zhong X, Tang X, Scott BA, Yan JY, Flibotte S, Lim Y, Hsieh AC, Bruce JE, Van Gilst M, Crowder CM. Coordinate Regulation of Ribosome and tRNA Biogenesis Controls Hypoxic Injury and Translation. Current Biology : Cb. PMID 33157031 DOI: 10.1016/j.cub.2020.10.001   
2020 Nostramo RT, Hopper AK. A novel assay provides insight into tRNAPhe retrograde nuclear import and re-export in S. cerevisiae. Nucleic Acids Research. PMID 33074312 DOI: 10.1093/nar/gkaa879   
2020 Zambaldo C, Koh M, Nasertorabi F, Han GW, Chatterjee A, Stevens RC, Schultz PG. An orthogonal seryl-tRNA synthetase/tRNA pair for noncanonical amino acid mutagenesis in Escherichia coli. Bioorganic & Medicinal Chemistry. 28: 115662. PMID 33069069 DOI: 10.1016/j.bmc.2020.115662   
2020 Lin H, Zhou X, Chen X, Huang K, Wu W, Fu J, Li Y, Polychronakos C, Dong GP. tRNA methyltransferase 10 homologue A () mutation in a Chinese patient with diabetes, insulin resistance, intellectual deficiency and microcephaly. Bmj Open Diabetes Research & Care. 8. PMID 33067246 DOI: 10.1136/bmjdrc-2020-001601   
2020 Wang Y, Gai Y, Li Y, Li C, Li Z, Wang X. SARS-CoV-2 has the advantage of competing the iMet-tRNAs with human hosts to allow efficient translation. Molecular Genetics and Genomics : Mgg. PMID 33040198 DOI: 10.1007/s00438-020-01731-4   
2020 Zhang R, Noordam L, Ou X, Ma B, Li Y, Das P, Shi S, Liu J, Wang L, Li P, Verstegen MMA, Reddy DS, van der Laan LJW, Peppelenbosch MP, Kwekkeboom J, et al. The biological process of lysine-tRNA charging is therapeutically targetable in liver cancer. Liver International : Official Journal of the International Association For the Study of the Liver. PMID 33084231 DOI: 10.1111/liv.14692   
2020 NIblett D, Nelson C, Leung CS, Rexroad G, Cozy J, Zhou J, Lancaster L, Noller HF. Mutations in Domain IV of Elongation Factor EF-G Confer -1 Frameshifting. Rna (New York, N.Y.). PMID 33008838 DOI: 10.1261/rna.077339.120   
2020 Schmitt E, Coureux PD, Kazan R, Bourgeois G, Lazennec-Schurdevin C, Mechulam Y. Recent Advances in Archaeal Translation Initiation. Frontiers in Microbiology. 11: 584152. PMID 33072057 DOI: 10.3389/fmicb.2020.584152   
2020 Saito K, Green R, Buskirk AR. Ribosome recycling is not critical for translational coupling in . Elife. 9. PMID 32965213 DOI: 10.7554/eLife.59974   
2020 Matzov D, Taoka M, Nobe Y, Yamauchi Y, Halfon Y, Asis N, Zimermann E, Rozenberg H, Bashan A, Bhushan S, Isobe T, Gray MW, Yonath A, Shalev-Benami M. Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis. Nucleic Acids Research. PMID 33091122 DOI: 10.1093/nar/gkaa893   
2020 Ahmed N, Friedrich UA, Sormanni P, Ciryam P, Altman NS, Bukau B, Kramer G, O'Brien EP. Pairs of amino acids at the P- and A-sites of the ribosome predictably and causally modulate translation-elongation rates. Journal of Molecular Biology. PMID 33152326 DOI: 10.1016/j.jmb.2020.10.030   
2020 Ehrenbolger K, Jespersen N, Sharma H, Sokolova YY, Tokarev YS, Vossbrinck CR, Barandun J. Differences in structure and hibernation mechanism highlight diversification of the microsporidian ribosome. Plos Biology. 18: e3000958. PMID 33125369 DOI: 10.1371/journal.pbio.3000958   
2020 Alexaki A, Kames J, Hettiarachchi GK, Athey JC, Katneni UK, Hunt RC, Hamasaki-Katagiri N, Holcomb DD, DiCuccio M, Bar H, Komar AA, Kimchi-Sarfaty C. Ribosome profiling of HEK293T cells overexpressing codon optimized coagulation factor IX. F1000research. 9: 174. PMID 33014344 DOI: 10.12688/f1000research.22400.2   
2020 Won E, Morodomi Y, Kanaji S, Shapiro R, Vo MN, Orje JN, Thornburg CD, Yang XL, Ruggeri ZM, Schimmel P, Kanaji T. Extracellular tyrosyl-tRNA synthetase cleaved by plasma proteinases and stored in platelet α-granules: Potential role in monocyte activation. Research and Practice in Thrombosis and Haemostasis. 4: 1167-1177. PMID 33134783 DOI: 10.1002/rth2.12429   
2020 Cao J, Cowan DB, Wang DZ. tRNA-Derived Small RNAs and Their Potential Roles in Cardiac Hypertrophy. Frontiers in Pharmacology. 11: 572941. PMID 33041815 DOI: 10.3389/fphar.2020.572941   
2020 Poitevin F, Kushner A, Li X, Dao Duc K. Structural Heterogeneities of the Ribosome: New Frontiers and Opportunities for Cryo-EM. Molecules (Basel, Switzerland). 25. PMID 32957592 DOI: 10.3390/molecules25184262   
2020 Fostier CR, Monlezun L, Ousalem F, Singh S, Hunt JF, Boël G. ABC-F translation factors: from antibiotic resistance to immune response. Febs Letters. PMID 33135152 DOI: 10.1002/1873-3468.13984   
2020 Zhou W, Wesalo JS, Liu J, Deiters A. Genetic code expansion in mammalian cells: A plasmid system comparison. Bioorganic & Medicinal Chemistry. 115772. PMID 33069552 DOI: 10.1016/j.bmc.2020.115772   
2020 Gonzalez A, Corsini G, Lobos S, Seelenfreund D, Tello M. Metabolic Specialization and Codon Preference of Lignocellulolytic Genes in the White Rot Basidiomycete . Genes. 11. PMID 33092062 DOI: 10.3390/genes11101227   
2020 Zhou X, Dietrich CH, Huang M. Characterization of the Complete Mitochondrial Genomes of Two Species with Preliminary Investigation on Phylogenetic Status of Zyginellini (Hemiptera: Cicadellidae: Typhlocybinae). Insects. 11. PMID 33050478 DOI: 10.3390/insects11100684   
2020 Liu HL, Chen QD, Chen S, Pu DQ, Chen ZT, Liu YY, Liu X. The highly rearranged mitochondrial genomes of three economically important scale insects and the mitochondrial phylogeny of Coccoidea (Hemiptera: Sternorrhyncha). Peerj. 8: e9932. PMID 33083111 DOI: 10.7717/peerj.9932   
2020 Skeparnias I, Anastasakis D, Grafanaki K, Kyriakopoulos G, Alexopoulos P, Dougenis D, Scorilas A, Kontos CK, Stathopoulos C. Contribution of miRNAs, tRNAs and tRFs to Aberrant Signaling and Translation Deregulation in Lung Cancer. Cancers. 12. PMID 33092114 DOI: 10.3390/cancers12103056   
2020 Chen Z, Liu Y, Wu Y, Song F, Cai W, Li H. Novel tRNA gene rearrangements in the mitochondrial genome of Camarochiloides weiweii (Hemiptera: Pachynomidae). International Journal of Biological Macromolecules. PMID 33069822 DOI: 10.1016/j.ijbiomac.2020.10.051   
2020 da Silva FS, Cruz ACR, de Almeida Medeiros DB, da Silva SP, Nunes MRT, Martins LC, Chiang JO, da Silva Lemos P, Cunha GM, de Araujo RF, de Oliveira Monteiro HA, Nunes Neto JP. Mitochondrial genome sequencing and phylogeny of Haemagogus albomaculatus, Haemagogus leucocelaenus, Haemagogus spegazzinii, and Haemagogus tropicalis (Diptera: Culicidae). Scientific Reports. 10: 16948. PMID 33046768 DOI: 10.1038/s41598-020-73790-x   
2020 Slimane SN, Marcel V, Fenouil T, Catez F, Saurin JC, Bouvet P, Diaz JJ, Mertani HC. Ribosome Biogenesis Alterations in Colorectal Cancer. Cells. 9. PMID 33120992 DOI: 10.3390/cells9112361   
2020 Cai Y, Usher B, Gutierrez C, Tolcan A, Mansour M, Fineran PC, Condon C, Neyrolles O, Genevaux P, Blower TR. A nucleotidyltransferase toxin inhibits growth of through inactivation of tRNA acceptor stems. Science Advances. 6: eabb6651. PMID 32923609 DOI: 10.1126/sciadv.abb6651   
2020 Chen M, Liu J, Chen D, Guo X. Complete mitochondrial genome of a blue-tailed skink Plestiodon capito (Reptilia, Squamata, Scincidae) and comparison with other Scincidae lizards. Genetica. PMID 33044712 DOI: 10.1007/s10709-020-00107-1   
2020 Vargas-Rodriguez O, Bakhtina M, McGowan D, Abid J, Goto Y, Suga H, Musier-Forsyth K. Human -editing enzyme displays tRNA acceptor stem specificity and relaxed amino acid selectivity. The Journal of Biological Chemistry. PMID 33051185 DOI: 10.1074/jbc.RA120.015981   
2020 Sherlock ME, Hartwick EW, MacFadden A, Kieft JS. Structural Diversity and Phylogenetic Distribution of Valyl tRNA-like Structures in Viruses. Rna (New York, N.Y.). PMID 33008837 DOI: 10.1261/rna.076968.120   
2020 Yu YC, Han JM, Kim S. Aminoacyl-tRNA Synthetases and amino acid signaling. Biochimica Et Biophysica Acta. Molecular Cell Research. 118889. PMID 33091505 DOI: 10.1016/j.bbamcr.2020.118889   
2020 Calvet LE, Matviienko S, Ducluzaux P. Network theory of the bacterial ribosome. Plos One. 15: e0239700. PMID 33017414 DOI: 10.1371/journal.pone.0239700   
2020 Caulfield TR, Hayes KE, Qiu Y, Coban M, Seok Oh J, Lane AL, Yoshimitsu T, Hazlehurst L, Copland JA, Tun HW. A Virtual Screening Platform Identifies Chloroethylagelastatin A as a Potential Ribosomal Inhibitor. Biomolecules. 10. PMID 33027969 DOI: 10.3390/biom10101407   
2020 Frazier MN, Pillon MC, Kocaman S, Gordon J, Stanley RE. Structural overview of macromolecular machines involved in ribosome biogenesis. Current Opinion in Structural Biology. 67: 51-60. PMID 33099228 DOI: 10.1016/   
2020 Meydan S, Guydosh NR. A cellular handbook for collided ribosomes: surveillance pathways and collision types. Current Genetics. PMID 33044589 DOI: 10.1007/s00294-020-01111-w   
2020 Saga Y, Kawashima M, Sakai S, Yamazaki K, Kaneko M, Takahashi M, Sato N, Toyoda Y, Takase S, Nakano T, Kawakami N, Kushiro T. Plant-Specific Domains and Fragmented Sequences Imply Non-Canonical Functions in Plant Aminoacyl-tRNA Synthetases. Genes. 11. PMID 32906706 DOI: 10.3390/genes11091056   
2020 Smethurst DGJ, Kovalev N, McKenzie ER, Pestov DG, Shcherbik N. Iron-mediated degradation of ribosomes under oxidative stress is attenuated by manganese. The Journal of Biological Chemistry. PMID 33040024 DOI: 10.1074/jbc.RA120.015025   
2020 Cui Z, Johnston WA, Alexandrov K. Cell-Free Approach for Non-canonical Amino Acids Incorporation Into Polypeptides. Frontiers in Bioengineering and Biotechnology. 8: 1031. PMID 33117774 DOI: 10.3389/fbioe.2020.01031   
2020 Itoh Y, Naschberger A, Mortezaei N, Herrmann JM, Amunts A. Analysis of translating mitoribosome reveals functional characteristics of translation in mitochondria of fungi. Nature Communications. 11: 5187. PMID 33056988 DOI: 10.1038/s41467-020-18830-w   
2020 Doshi K, Pandya N, Datt M. In silico assessment of natural products and approved drugs as potential inhibitory scaffolds targeting aminoacyl-tRNA synthetases from . 3 Biotech. 10: 470. PMID 33088666 DOI: 10.1007/s13205-020-02460-6