Shawn B. Harmon, Ph.D. - Related publications

2002 University of Alabama, Birmingham, Birmingham, AL, United States 
Microbiology Biology, Molecular Biology
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Tu Z, Shen Y, Wen S, Zong Y, Li H. Alternative Splicing Enhances the Transcriptome Complexity of . Frontiers in Plant Science. 11: 578100. PMID 33072153 DOI: 10.3389/fpls.2020.578100   
2020 Cary M, Podshivalova K, Kenyon C. Application of Transcriptional Gene Modules to Analysis of Gene Expression Data. G3 (Bethesda, Md.). PMID 32759329 DOI: 10.1534/g3.120.401270   
2020 van Leeuwen J, Pons C, Tan G, Wang JZ, Hou J, Weile J, Gebbia M, Liang W, Shuteriqi E, Li Z, Lopes M, Ušaj M, Dos Santos Lopes A, van Lieshout N, Myers CL, et al. Systematic analysis of bypass suppression of essential genes. Molecular Systems Biology. 16: e9828. PMID 32939983 DOI: 10.15252/msb.20209828   
2020 Soutourina O, Dubois T, Monot M, Shelyakin PV, Saujet L, Boudry P, Gelfand MS, Dupuy B, Martin-Verstraete I. Genome-Wide Transcription Start Site Mapping and Promoter Assignments to a Sigma Factor in the Human Enteropathogen . Frontiers in Microbiology. 11: 1939. PMID 32903654 DOI: 10.3389/fmicb.2020.01939   
2020 Giosa D, Felice MR, Giuffrè L, Aiese Cigliano R, Paytuví-Gallart A, Lo Passo C, Barresi C, D'Alessandro E, Huang H, Criseo G, Mora-Montes HM, de Hoog S, Romeo O. Transcriptome-wide expression profiling of yeast and mycelial forms and the establishment of the Sporothrix Genome DataBase. Microbial Genomics. PMID 33034552 DOI: 10.1099/mgen.0.000445   
2020 Li M, Xie F, Li Y, Gong L, Luo Y, Zhang Y, Chen Q, Wang Y, Lin Y, Zhang Y, Wang X, Tang H. Genome-Wide Analysis of the Heat Shock Transcription Factor Gene Family in : Structure, Evolution, and Expression Profiles. Dna and Cell Biology. PMID 32945687 DOI: 10.1089/dna.2020.5922   
2020 Sidhu NS, Pruthi G, Singh S, Bishnoi R, Singla D. Genome-wide identification and analysis of GRAS transcription factors in the bottle gourd genome. Scientific Reports. 10: 14338. PMID 32868844 DOI: 10.1038/s41598-020-71240-2   
2020 Cheng X, Cao J, Gao C, Gao W, Yan S, Yao H, Xu K, Liu X, Xu D, Pan X, Lu J, Chang C, Zhang H, Ma C. Identification of the wheat C3H gene family and expression analysis of candidates associated with seed dormancy and germination. Plant Physiology and Biochemistry : Ppb. 156: 524-537. PMID 33053501 DOI: 10.1016/j.plaphy.2020.09.032   
2020 Yousuf M, Iuliani I, Veetil RT, Seshasayee ASN, Sclavi B, Cosentino Lagomarsino M. Early fate of exogenous promoters in E. coli. Nucleic Acids Research. 48: 2348-2356. PMID 31960057 DOI: 10.1093/nar/gkz1196   
2020 Brown JC. Involvement of promoter/enhancers in a feedback loop to regulate human gene expression. Heliyon. 6: e04934. PMID 32995621 DOI: 10.1016/j.heliyon.2020.e04934   
2020 Luo H, Lin Y, Liu T, Lai FL, Zhang CT, Gao F, Zhang R. DEG 15, an update of the Database of Essential Genes that includes built-in analysis tools. Nucleic Acids Research. PMID 33095861 DOI: 10.1093/nar/gkaa917   
2020 Li H, Sharma A, Ming W, Sun X, Liu H. A deconvolution method and its application in analyzing the cellular fractions in acute myeloid leukemia samples. Bmc Genomics. 21: 652. PMID 32967610 DOI: 10.1186/s12864-020-06888-1   
2020 Schniete JK, Reumerman R, Kerr L, Tucker NP, Hunter IS, Herron PR, Hoskisson PA. Differential transcription of expanded gene families in central carbon metabolism of A3(2). Access Microbiology. 2: acmi000122. PMID 32974587 DOI: 10.1099/acmi.0.000122   
2020 Fan H, Cui M, Li N, Li X, Liang Y, Liu L, Cai Y, Lin Y. Genome-wide identification and expression analyses of R2R3-MYB transcription factor genes from two Orchid species. Peerj. 8: e9781. PMID 32953268 DOI: 10.7717/peerj.9781   
2020 Quan FS, Kong HH, Lee HA, Chu KB, Moon EK. Identification of differentially expressed genes during its intracellular growth in . Heliyon. 6: e05238. PMID 33088972 DOI: 10.1016/j.heliyon.2020.e05238   
2020 Bai J, Luo Y, Zhang S. Microarray data analysis reveals gene expression changes in response to ionizing radiation in MCF7 human breast cancer cells. Hereditas. 157: 37. PMID 32883354 DOI: 10.1186/s41065-020-00151-z   
2020 Xia Y, Xie J, Zhao J, Lou Y, Cao D. Screening and Identification of Key Biomarkers in Melanoma: Evidence from Bioinformatic Analyses. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 32985909 DOI: 10.1089/cmb.2019.0400   
2020 Ma Y, Chen SS, Feng YY, Wang HL. Identification of Novel Biomarkers Involved in Pulmonary Arterial Hypertension based on Multiple-microarray Analysis. Bioscience Reports. PMID 32886110 DOI: 10.1042/BSR20202346   
2020 Cao H, He X, Du J, Zhang R, Chen Y, Ma Y, Chen Q, Fang C, Ho CT, Zhang S, Wan X. Time-series transcriptomic analysis reveals novel gene modules that control theanine biosynthesis in tea plant (Camellia sinensis). Plos One. 15: e0238175. PMID 32911493 DOI: 10.1371/journal.pone.0238175   
2020 Wang YW, Hess J, Slot JC, Pringle A. De novo gene birth, horizontal gene transfer and gene duplication as sources of new gene families associated with the origin of symbiosis in Amanita. Genome Biology and Evolution. PMID 32926145 DOI: 10.1093/gbe/evaa193   
2020 Deschepper CF. Regulatory effects of the Uty/Ddx3y locus on neighboring chromosome Y genes and autosomal mRNA transcripts in adult mouse non-reproductive cells. Scientific Reports. 10: 14900. PMID 32913328 DOI: 10.1038/s41598-020-71447-3   
2020 Liu S, Sun R, Zhang X, Feng Z, Wei F, Zhao L, Zhang Y, Zhu L, Feng H, Zhu H. Genome-Wide Analysis of Family Genes in Cotton Identified a Role for in Resistance. Genes. 11. PMID 32992523 DOI: 10.3390/genes11101134   
2020 Zhang J, Fan X, Hu Y, Zhou X, He Q, Liang L, Xing YZ. Global analysis of CCT family knockout mutants identifies four genes involved in regulating heading date in rice. Journal of Integrative Plant Biology. PMID 32889758 DOI: 10.1111/jipb.13013   
2020 Tung KF, Pan CY, Chen CH, Lin WC. Top-ranked expressed gene transcripts of human protein-coding genes investigated with GTEx dataset. Scientific Reports. 10: 16245. PMID 33004865 DOI: 10.1038/s41598-020-73081-5   
2020 Tang R, Lu L, Wang B, Yu J, Wang H. Identification of the Immediate-Early Genes of Cyprinid Herpesvirus 2. Viruses. 12. PMID 32906668 DOI: 10.3390/v12090994   
2020 Zhang D, Guelfi S, Garcia-Ruiz S, Costa B, Reynolds RH, D'Sa K, Liu W, Courtin T, Peterson A, Jaffe AE, Hardy J, Botía JA, Collado-Torres L, Ryten M. Incomplete annotation has a disproportionate impact on our understanding of Mendelian and complex neurogenetic disorders. Science Advances. 6. PMID 32917675 DOI: 10.1126/sciadv.aay8299   
2020 Jiang M, He Y, Chen X, Zhang X, Guo Y, Yang S, Huang J, Traw MB. CRISPR-based assessment of genomic structure in the conserved SQUAMOSA promoter-binding-like gene clusters in rice. The Plant Journal : For Cell and Molecular Biology. PMID 32996244 DOI: 10.1111/tpj.15001   
2020 Soremekun OS, Omolabi KF, Soliman MES. Identification and classification of differentially expressed genes reveal potential molecular signature associated with SARS-CoV-2 infection in lung adenocarcinomal cells. Informatics in Medicine Unlocked. 20: 100384. PMID 32835074 DOI: 10.1016/j.imu.2020.100384   
2020 Zhang T, Tan M, Geng L, Li J, Xiang Y, Zhang B, Zhao Y. New insight into comprehensive analysis of INDETERMINATE DOMAIN (IDD) gene family in rice. Plant Physiology and Biochemistry : Ppb. 154: 547-556. PMID 32912488 DOI: 10.1016/j.plaphy.2020.06.032   
2020 Lu B, Wang Y, Zhang G, Feng Y, Yan Z, Wu J, Chen X. Genome-Wide Identification and Expression Analysis of the Strawberry Gene Family and the Role of Key Gene in Fruit Resistance to Gray Mold. Plants (Basel, Switzerland). 9. PMID 32937812 DOI: 10.3390/plants9091199   
2020 Chang WC, Xu Y. [Integrated bioinformatics analysis of key genes in allergic rhinitis]. Zhonghua Er Bi Yan Hou Tou Jing Wai Ke Za Zhi = Chinese Journal of Otorhinolaryngology Head and Neck Surgery. 55: 458-464. PMID 32842359 DOI: 10.3760/cma.j.cn115330-20200123-00049   
2020 Li Y, Song Q, Zhang Y, Li Z, Guo J, Chen X, Zhang G. Genome-wide identification, characterization, and expression patterns analysis of the SBP-box gene family in wheat (Triticum aestivum L.). Scientific Reports. 10: 17250. PMID 33057145 DOI: 10.1038/s41598-020-74417-x   
2020 Fang Y, Liu D, Yang Y, Zhang H, Wu H, Jiang H, Zhao L, Zhang Z. Altered gene expression profiles of testicular tissues from azoospermic patients with maturation arrest. Andrologia. e13812. PMID 32862460 DOI: 10.1111/and.13812   
2020 Vangala P, Murphy R, Quinodoz SA, Gellatly K, McDonel P, Guttman M, Garber M. High-Resolution Mapping of Multiway Enhancer-Promoter Interactions Regulating Pathogen Detection. Molecular Cell. PMID 32991830 DOI: 10.1016/j.molcel.2020.09.005   
2020 Wang L, Chen X, Song T, Zhang X, Zhan S, Cao J, Zhong T, Guo J, Li L, Zhang H, Wang Y. Using RNA-Seq to Identify Reference Genes of the Transition from Brown to White Adipose Tissue in Goats. Animals : An Open Access Journal From Mdpi. 10. PMID 32927876 DOI: 10.3390/ani10091626   
2020 Wang L, Chen X, Song T, Zhang X, Zhan S, Cao J, Zhong T, Guo J, Li L, Zhang H, Wang Y. Using RNA-Seq to Identify Reference Genes of the Transition from Brown to White Adipose Tissue in Goats. Animals : An Open Access Journal From Mdpi. 10. PMID 32927876 DOI: 10.3390/ani10091626   
2020 Crosby FL, Munderloh UG, Nelson CM, Herron MJ, Lundgren AM, Xiao YP, Allred DR, Barbet AF. Disruption of VirB6 paralogs in attenuates its growth. Journal of Bacteriology. PMID 32928930 DOI: 10.1128/JB.00301-20   
2020 Öztan G, Aktan M, Palanduz S, İşsever H, Öztürk S, Nikerel E, Uçur A, Bağatir G, Bayrak A, Çefle K. Relationship between Chromosomal Aberrations and Gene Expressions in the p53 Pathway in Chronic Lymphocytic Leukemia. Balkan Journal of Medical Genetics : Bjmg. 23: 15-24. PMID 32953405 DOI: 10.2478/bjmg-2020-0007   
2020 Tseng KC, Li GZ, Hung YC, Chow CN, Wu NY, Chien YY, Zheng HQ, Lee TY, Kuo PL, Chang SB, Chang WC. EXPath 2.0: An Updated Database for Integrating High-Throughput Gene Expression Data with Biological Pathways. Plant & Cell Physiology. PMID 32898258 DOI: 10.1093/pcp/pcaa115   
2020 Qi S, Chen S, Li W, Xu X, Zhong M, Lin J, Yu Y, Chen Y, Li H. Alternative splicing and duplication of PI-like genes in maize. Gene. 145064. PMID 32891770 DOI: 10.1016/j.gene.2020.145064   
2020 Rajaram K, Liu HB, Prigge ST. Redesigned TetR-Aptamer System To Control Gene Expression in Plasmodium falciparum. Msphere. 5. PMID 32817449 DOI: 10.1128/mSphere.00457-20   
2020 N'Diaye A, Byrns B, Cory AT, Nilsen KT, Walkowiak S, Sharpe A, Robinson SJ, Pozniak CJ. Machine learning analyses of methylation profiles uncovers tissue-specific gene expression patterns in wheat. The Plant Genome. 13: e20027. PMID 33016606 DOI: 10.1002/tpg2.20027   
2020 Di Maria V, Moindrot M, Ryde M, Bono A, Quintino L, Ledri M. Development and Validation of CRISPR Activator Systems for Overexpression of CB1 Receptors in Neurons. Frontiers in Molecular Neuroscience. 13: 168. PMID 33013319 DOI: 10.3389/fnmol.2020.00168   
2020 Walter M, Verdin E. Viral gene drive in herpesviruses. Nature Communications. 11: 4884. PMID 32985507 DOI: 10.1038/s41467-020-18678-0   
2020 Smith TAD, AbdelKarem OA, Irlam-Jones JJ, Lane B, Valentine H, Bibby BAS, Denley H, Choudhury A, West CML. Selection of endogenous control genes for normalising gene expression data derived from formalin-fixed paraffin-embedded tumour tissue. Scientific Reports. 10: 17258. PMID 33057113 DOI: 10.1038/s41598-020-74380-7   
2020 Lu L, Xu X, Du X, Zeng T, Yang T, Chen Y, Tao Z, Zhong S, Wen J, Zhou C. Transcriptome analyses to reveal the dynamic change mechanism of pigeon magnum during one egg-laying cycle. Molecular Reproduction and Development. PMID 33084116 DOI: 10.1002/mrd.23428   
2020 Lv L, Zhang W, Sun L, Zhao A, Zhang Y, Wang L, Liu Y, Li Z, Li H, Chen X. Gene co-expression network analysis to identify critical modules and candidate genes of drought-resistance in wheat. Plos One. 15: e0236186. PMID 32866164 DOI: 10.1371/journal.pone.0236186   
2020 Xu PC, He WF, Cheng B. [Exploration of the mechanism of human platelet-rich plasma in regulating and controlling human epidermal stem cells for promoting wound re-epithelialization at transcriptome level]. Zhonghua Shao Shang Za Zhi = Zhonghua Shaoshang Zazhi = Chinese Journal of Burns. 36: 915-922. PMID 33105943 DOI: 10.3760/cma.j.cn501120-20200707-00341   
2020 Yin S, Li W, Yang G, Cheng Y, Yi Q, Fan S, Ma Q, Zeng F. Effect of Exogenous Transcription Factors Integration Sites on Safety and Pluripotency of Induced Pluripotent Stem Cells. Balkan Journal of Medical Genetics : Bjmg. 23: 5-13. PMID 32953404 DOI: 10.2478/bjmg-2020-0003   
2020 Polkoff KM, Chung J, Simpson SG, Gleason K, Piedrahita JA. Validation of Transgene Expression in Gene-Edited Pigs Using CRISPR Transcriptional Activators. The Crispr Journal. 3: 409-418. PMID 33095051 DOI: 10.1089/crispr.2020.0037