James P. Shapleigh - Publications

Affiliations: 
Cornell University, Ithaca, NY, United States 
Area:
Molecular Biology, Microbiology Biology

60 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Roco CA, Bergaust LL, Bakken LR, Yavitt JB, Shapleigh JP. Modularity of nitrogen-oxide reducing soil bacteria: Linking phenotype to genotype. Environmental Microbiology. PMID 26914200 DOI: 10.1111/1462-2920.13250  1
2015 Baldan E, Basaglia M, Fontana F, Shapleigh JP, Casella S. Development, assessment and evaluation of a biopile for hydrocarbons soil remediation International Biodeterioration and Biodegradation. 98: 66-72. DOI: 10.1016/j.ibiod.2014.12.002  1
2014 Bergaust LL, Hartsock A, Liu B, Bakken LR, Shapleigh JP. Role of norEF in denitrification, elucidated by physiological experiments with Rhodobacter sphaeroides. Journal of Bacteriology. 196: 2190-200. PMID 24706737 DOI: 10.1128/JB.00003-14  1
2014 Hewson I, Eggleston EM, Doherty M, Lee DY, Owens M, Shapleigh JP, Cornwell JC, Crump BC. Metatranscriptomic analyses of plankton communities inhabiting surface and subpycnocline waters of the Chesapeake Bay during oxic-anoxic-oxic transitions. Applied and Environmental Microbiology. 80: 328-38. PMID 24162577 DOI: 10.1128/AEM.02680-13  1
2013 Stern AM, Liu B, Bakken LR, Shapleigh JP, Zhu J. A novel protein protects bacterial iron-dependent metabolism from nitric oxide. Journal of Bacteriology. 195: 4702-8. PMID 23935055 DOI: 10.1128/JB.00836-13  1
2013 Shapleigh JP. Denitrifying prokaryotes The Prokaryotes: Prokaryotic Physiology and Biochemistry. 405-425. DOI: 10.1007/978-3-642-30141-4_71  1
2011 Hartsock A, Shapleigh JP. Physiological roles for two periplasmic nitrate reductases in Rhodobacter sphaeroides 2.4.3 (ATCC 17025). Journal of Bacteriology. 193: 6483-9. PMID 21949073 DOI: 10.1128/JB.05324-11  1
2011 Shapleigh JP. Oxygen control of nitrogen oxide respiration, focusing on α-proteobacteria. Biochemical Society Transactions. 39: 179-83. PMID 21265769 DOI: 10.1042/BST0390179  1
2010 Hartsock A, Shapleigh JP. Mechanisms of oxygen inhibition of nirK expression in Rhodobacter sphaeroides. Microbiology (Reading, England). 156: 3158-65. PMID 20595263 DOI: 10.1099/mic.0.038703-0  1
2010 Hartsock A, Shapleigh JP. Identification, functional studies, and genomic comparisons of new members of the NnrR regulon in Rhodobacter sphaeroides. Journal of Bacteriology. 192: 903-11. PMID 19966004 DOI: 10.1128/JB.01026-09  1
2009 Lee B, Usov OM, Grigoryants VM, Myers WK, Shapleigh JP, Scholes CP. The role of arginine-127 at the proximal NO-binding site in determining the electronic structure and function of 5-coordinate NO-heme in cytochrome c' of Rhodobacter sphaeroides. Biochemistry. 48: 8985-93. PMID 19685879 DOI: 10.1021/bi900833f  1
2008 Baek SH, Hartsock A, Shapleigh JP. Agrobacterium tumefaciens C58 uses ActR and FnrN to control nirK and nor expression. Journal of Bacteriology. 190: 78-86. PMID 17981975 DOI: 10.1128/JB.00792-07  1
2007 Basaglia M, Toffanin A, Baldan E, Bottegal M, Shapleigh JP, Casella S. Selenite-reducing capacity of the copper-containing nitrite reductase of Rhizobium sullae. Fems Microbiology Letters. 269: 124-30. PMID 17227457 DOI: 10.1111/j.1574-6968.2006.00617.x  1
2006 Usov OM, Sun Y, Grigoryants VM, Shapleigh JP, Scholes CP. EPR-ENDOR of the Cu(I)NO complex of nitrite reductase. Journal of the American Chemical Society. 128: 13102-11. PMID 17017790 DOI: 10.1021/ja056166n  1
2006 Laratta WP, Nanaszko MJ, Shapleigh JP. Electron transfer to nitrite reductase of Rhodobacter sphaeroides 2.4.3: examination of cytochromes c2 and cY. Microbiology (Reading, England). 152: 1479-88. PMID 16622064 DOI: 10.1099/mic.0.28524-0  1
2006 Usov OM, Choi PS, Shapleigh JP, Scholes CP. ENDOR of NO-ligated cytochrome c'. Journal of the American Chemical Society. 128: 5021-32. PMID 16608336 DOI: 10.1021/ja055323f  1
2006 Choi PS, Naal Z, Moore C, Casado-Rivera E, Abruña HD, Helmann JD, Shapleigh JP. Assessing the impact of denitrifier-produced nitric oxide on other bacteria. Applied and Environmental Microbiology. 72: 2200-5. PMID 16517672 DOI: 10.1128/AEM.72.3.2200-2205.2006  1
2006 Casella S, Shapleigh JP, Toffanin A, Basaglia M. Investigation into the role of the truncated denitrification chain in Rhizobium sullae strain HCNT1 Biochemical Society Transactions. 34: 130-132. PMID 16417501 DOI: 10.1042/BST0340130  1
2005 Baek SH, Shapleigh JP. Expression of nitrite and nitric oxide reductases in free-living and plant-associated Agrobacterium tumefaciens C58 cells. Applied and Environmental Microbiology. 71: 4427-36. PMID 16085833 DOI: 10.1128/AEM.71.8.4427-4436.2005  1
2005 Usov OM, Choi PS, Shapleigh JP, Scholes CP. ENDOR investigation of the liganding environment of mixed-spin ferric cytochrome c'. Journal of the American Chemical Society. 127: 9485-94. PMID 15984875 DOI: 10.1021/ja043994s  1
2005 Choi PS, Grigoryants VM, Abruña HD, Scholes CP, Shapleigh JP. Regulation and function of cytochrome c' in Rhodobacter sphaeroides 2.4.3. Journal of Bacteriology. 187: 4077-85. PMID 15937170 DOI: 10.1128/JB.187.12.4077-4085.2005  1
2003 Laratta WP, Shapleigh JP. Site-directed mutagenesis of NnrR: a transcriptional regulator of nitrite and nitric oxide reductase in Rhodobacter sphaeroides. Fems Microbiology Letters. 229: 173-8. PMID 14680695 DOI: 10.1016/S0378-1097(03)00821-8  1
2003 Basumallick L, Szilagyi RK, Zhao Y, Shapleigh JP, Scholes CP, Solomon EI. Spectroscopic studies of the Met182Thr mutant of nitrite reductase: role of the axial ligand in the geometric and electronic structure of blue and green copper sites. Journal of the American Chemical Society. 125: 14784-92. PMID 14640653 DOI: 10.1021/ja037232t  1
2003 Yin S, Fuangthong M, Laratta WP, Shapleigh JP. Use of a green fluorescent protein-based reporter fusion for detection of nitric oxide produced by denitrifiers. Applied and Environmental Microbiology. 69: 3938-44. PMID 12839764 DOI: 10.1128/AEM.69.7.3938-3944.2003  1
2002 Laratta WP, Choi PS, Tosques IE, Shapleigh JP. Involvement of the PrrB/PrrA two-component system in nitrite respiration in Rhodobacter sphaeroides 2.4.3: evidence for transcriptional regulation. Journal of Bacteriology. 184: 3521-9. PMID 12057946 DOI: 10.1128/JB.184.13.3521-3529.2002  1
2002 Zhao Y, Lukoyanov DA, Toropov YV, Wu K, Shapleigh JP, Scholes CP. Catalytic function and local proton structure at the type 2 copper of nitrite reductase: the correlation of enzymatic pH dependence, conserved residues, and proton hyperfine structure. Biochemistry. 41: 7464-74. PMID 12044180 DOI: 10.1021/bi0256274  1
2002 Lee DY, Ramos A, Macomber L, Shapleigh JP. Taxis response of various denitrifying bacteria to nitrate and nitrite. Applied and Environmental Microbiology. 68: 2140-7. PMID 11976082 DOI: 10.1128/AEM.68.5.2140-2147.2002  1
2002 Bartnikas TB, Wang Y, Bobo T, Veselov A, Scholes CP, Shapleigh JP. Characterization of a member of the NnrR regulon in Rhodobacter sphaeroides 2.4.3 encoding a haem-copper protein. Microbiology (Reading, England). 148: 825-33. PMID 11882718 DOI: 10.1099/00221287-148-3-825  1
2002 Naal Z, Park JH, Bernhard S, Shapleigh JP, Batt CA, Abruña HD. Amperometric TNT biosensor based on the oriented immobilization of a nitroreductase maltose binding protein fusion. Analytical Chemistry. 74: 140-8. PMID 11795782 DOI: 10.1021/ac010596o  1
2002 Takada K, Naal Z, Park JH, Shapleigh JP, Bernhard S, Batt CA, Abruña HD. Study of specific binding of maltose binding protein to pyrrole-derived bipyridinium film by quartz crystal microbalance Langmuir. 18: 4892-4897. DOI: 10.1021/la0116950  1
2001 Jain R, Shapleigh JP. Characterization of nirV and a gene encoding a novel pseudoazurin in Rhodobacter sphaeroides 2.4.3 Microbiology. 147: 2505-2515. PMID 11535790  1
2001 Mackenzie C, Choudhary M, Larimer FW, Predki PF, Stilwagen S, Armitage JP, Barber RD, Donohue TJ, Hosler JP, Newman JE, Shapleigh JP, Sockett RE, Zeilstra-Ryalls J, Kaplan S. The home stretch, a first analysis of the nearly completed genome of Rhodobacter sphaeroides 2.4.1 Photosynthesis Research. 70: 19-41. DOI: 10.1023/A:1013831823701  1
1998 Mitchell DM, Wang Y, Alben JO, Shapleigh JP. FT-IR analysis of membranes of Rhodobacter sphaeroides 2.4.3 grown under microaerobic and denitrifying conditions Biochimica Et Biophysica Acta - Bioenergetics. 1409: 99-105. PMID 9838065 DOI: 10.1016/S0005-2728(98)00154-6  1
1998 Wu Q, Storrier GD, Wu KR, Shapleigh JP, Abruña HD. Electrocatalytic reduction of S-nitrosoglutathione at electrodes modified with an electropolymerized film of a pyrrole-derived viologen system and their application to cellular S-nitrosoglutathione determinations. Analytical Biochemistry. 263: 102-12. PMID 9750150 DOI: 10.1006/abio.1998.2785  1
1998 Veselov A, Olesen K, Sienkiewicz A, Shapleigh JP, Scholes CP. Electronic structural information from Q-band endor on the type 1 and type 2 copper liganding environment in wild-type and mutant forms of copper- containing nitrite reductase Biochemistry. 37: 6095-6105. PMID 9558348 DOI: 10.1021/bi971604r  1
1998 Olesen K, Veselov A, Zhao Y, Wang Y, Danner B, Scholes CP, Shapleigh JP. Spectroscopic, kinetic, and electrochemical characterization of heterologously expressed wild-type and mutant forms of copper-containing nitrite reductase from Rhodobacter sphaeroides 2.4.3. Biochemistry. 37: 6086-94. PMID 9558347 DOI: 10.1021/bi971603z  1
1997 Wu Q, Storrier GD, Pariente F, Wang Y, Shapleigh JP, Abruña HD. A nitrite biosensor based on a maltose binding protein nitrite reductase fusion immobilized on an electropolymerized film of a pyrrole-derived bipyridinium. Analytical Chemistry. 69: 4856-63. PMID 9406533  1
1997 Kwiatkowski AV, Laratta WP, Toffanin A, Shapleigh JP. Analysis of the role of the nnrR gene product in the response of Rhodobacter sphaeroides 2.4.1 to exogenous nitric oxide. Journal of Bacteriology. 179: 5618-20. PMID 9287025  1
1997 Bartnikas TB, Tosques IE, Laratta WP, Shi J, Shapleigh JP. Characterization of the nitric oxide reductase-encoding region in Rhodobacter sphaeroides 2.4.3. Journal of Bacteriology. 179: 3534-40. PMID 9171397  1
1997 Tosques IE, Kwiatkowski AV, Shi J, Shapleigh JP. Characterization and regulation of the gene encoding nitrite reductase in Rhodobacter sphaeroides 2.4.3 Journal of Bacteriology. 179: 1090-1095. PMID 9023188  1
1996 Toffanin A, Wu Q, Maskus M, Caselia S, Abruña HD, Shapleigh JP. Characterization of the gene encoding nitrite reductase and the physiological consequences of its expression in the nondenitrifying Rhizobium "hedysari" strain HCNT1. Applied and Environmental Microbiology. 62: 4019-25. PMID 8899992  1
1996 Kwiatkowski AV, Shapleigh JP. Requirement of nitric oxide for induction of genes whose products are involved in nitric oxide metabolism in Rhodobacter sphaeroides 2.4.3 Journal of Biological Chemistry. 271: 24382-24388. PMID 8798693 DOI: 10.1074/jbc.271.40.24382  1
1996 Maskus M, Pariente F, Wu Q, Toffanin A, Shapleigh JP, Abruña HD. Electrocatalytic reduction of nitric oxide at electrodes modified with electropolymerized films of [Cr(v-tpy)2]3+ and their application to cellular NO determinations. Analytical Chemistry. 68: 3128-34. PMID 8797375  1
1996 Tosques IE, Shi J, Shapleigh JP. Cloning and characterization of nnrR, whose product is required for the expression of proteins involved in nitric oxide metabolism in Rhodobacter sphaeroides 2.4.3 Journal of Bacteriology. 178: 4958-4964. PMID 8759861  1
1996 Mitchell DM, Shapleigh JP, Archer AM, Alben JO, Gennis RB. A pH-dependent polarity change at the binuclear center of reduced cytochrome c oxidase detected by FTIR difference spectroscopy of the CO adduct. Biochemistry. 35: 9446-50. PMID 8755723 DOI: 10.1021/bi960392f  1
1996 Hosler JP, Shapleigh JP, Mitchell DM, Kim Y, Pressler MA, Georgiou C, Babcock GT, Alben JO, Ferguson-Miller S, Gennis RB. Polar residues in helix VIII of subunit I of cytochrome c oxidase influence the activity and the structure of the active site. Biochemistry. 35: 10776-83. PMID 8718868 DOI: 10.1021/bi9606511  1
1995 Fetter JR, Qian J, Shapleigh J, Thomas JW, García-Horsman A, Schmidt E, Hosler J, Babcock GT, Gennis RB, Ferguson-Miller S. Possible proton relay pathways in cytochrome c oxidase. Proceedings of the National Academy of Sciences of the United States of America. 92: 1604-8. PMID 7878026 DOI: 10.1073/pnas.92.5.1604  1
1994 Hosler JP, Shapleigh JP, Tecklenburg MJ, Thomas JW, Kim Y, Espe M, Fetter J, Babcock GT, Alben JO, Gennis RB. A loop between transmembrane helices IX and X of subunit I of cytochrome c oxidase caps the heme a-heme a3-CuB center. Biochemistry. 33: 1194-201. PMID 8110750 DOI: 10.1021/bi00171a019  1
1993 Hosler JP, Ferguson-Miller S, Calhoun MW, Thomas JW, Hill J, Lemieux L, Ma J, Georgiou C, Fetter J, Shapleigh J, Tecklenburg MMJ, Babcock GT, Gennis RB. Insight into the active-site structure and function of cytochrome oxidase by analysis of site-directed mutants of bacterial cytochrome aa3 and cytochrome bo Journal of Bioenergetics and Biomembranes. 25: 121-136. PMID 8389745 DOI: 10.1007/BF00762854  1
1992 Shapleigh JP, Hosler JP, Tecklenburg MM, Kim Y, Babcock GT, Gennis RB, Ferguson-Miller S. Definition of the catalytic site of cytochrome c oxidase: specific ligands of heme a and the heme a3-CuB center. Proceedings of the National Academy of Sciences of the United States of America. 89: 4786-90. PMID 1317571 DOI: 10.1073/pnas.89.11.4786  1
1992 Shapleigh JP, Gennis RB. Cloning, sequencing and deletion from the chromosome of the gene encoding subunit I of the aa3-type cytochrome c oxidase of Rhodobacter sphaeroides Molecular Microbiology. 6: 635-642. PMID 1313140 DOI: 10.1111/j.1365-2958.1992.tb01511.x  1
1992 Shapleigh JP, Hill JJ, Alben JO, Gennis RB. Spectroscopic and genetic evidence for two heme-Cu-containing oxidases in Rhodobacter sphaeroides Journal of Bacteriology. 174: 2338-2343. PMID 1313003 DOI: 10.1128/jb.174.7.2338-2343.1992  1
1991 Cao J, Shapleigh J, Gennis R, Revzin A, Ferguson-Miller S. The gene encoding cytochrome c oxidase subunit II from Rhodobacter sphaeroides; comparison of the deduced amino acid sequence with sequences of corresponding peptides from other species Gene. 101: 133-137. PMID 1648008 DOI: 10.1016/0378-1119(91)90235-4  1
1988 Casella S, Shapleigh JP, Payne WJ. Nitrite reduction in Bacteroids of Rhizobium "hedysari" strain HCNT 1 Archives of Microbiology. 149: 384-388. DOI: 10.1007/BF00425575  1
1987 Shapleigh JP, Davies KJP, Payne WJ. Detergent inhibition of nitric-oxide reductase activity Biochimica Et Biophysica Acta (Bba)/Protein Structure and Molecular. 911: 334-340. PMID 3028488 DOI: 10.1016/0167-4838(87)90074-4  1
1987 White GF, Dodgson KS, Davies I, Matts PJ, Shapleigh JP, Payne WJ. Bacterial utilisation of short-chain primary alkyl sulphate esters Fems Microbiology Letters. 40: 173-177.  1
1986 Shapleigh JP, Payne WJ. Respiration-linked proton flux in Wolinella succinogenes during reduction of N-oxides Archives of Biochemistry and Biophysics. 244: 713-718. PMID 3004349 DOI: 10.1016/0003-9861(86)90640-5  1
1986 Casella S, Shapleigh JP, Payne WJ. Nitrite reduction in Rhizobium "hedysari" strain HCNT 1 Archives of Microbiology. 146: 233-238. DOI: 10.1007/BF00403222  1
1985 Shapleigh JP, Payne WJ. Nitric oxide-dependent proton translocation in various denitrifiers Journal of Bacteriology. 163: 837-840. PMID 3928599  1
1985 Shapleigh JP, Payne WJ. Differentiation of c,d1 cytochrome and copper nitrite reductase production in denitrifiers Fems Microbiology Letters. 26: 275-279.  1
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