Krishna K. Niyogi - Publications

Affiliations: 
University of California, Berkeley, Berkeley, CA 
Area:
Microbiology Biology

119 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Arsenault EA, Yoneda Y, Iwai M, Niyogi KK, Fleming GR. The role of mixed vibronic Q-Q states in green light absorption of light-harvesting complex II. Nature Communications. 11: 6011. PMID 33243997 DOI: 10.1038/s41467-020-19800-y  0.44
2020 Steen CJ, Morris JM, Short AH, Niyogi KK, Fleming GR. Complex Roles of PsbS and Xanthophylls in the Regulation of Nonphotochemical Quenching in under Fluctuating Light. The Journal of Physical Chemistry. B. PMID 33166148 DOI: 10.1021/acs.jpcb.0c06265  0.44
2020 Arsenault EA, Yoneda Y, Iwai M, Niyogi KK, Fleming GR. Vibronic mixing enables ultrafast energy flow in light-harvesting complex II. Nature Communications. 11: 1460. PMID 32193383 DOI: 10.1038/s41467-020-14970-1  0.44
2019 Gabilly ST, Baker CR, Wakao S, Crisanto T, Guan K, Bi K, Guiet E, Guadagno CR, Niyogi KK. Regulation of photoprotection gene expression in by a putative E3 ubiquitin ligase complex and a homolog of CONSTANS. Proceedings of the National Academy of Sciences of the United States of America. PMID 31405963 DOI: 10.1073/pnas.1821689116  0.44
2019 Park S, Steen CJ, Lyska D, Fischer AL, Endelman B, Iwai M, Niyogi KK, Fleming GR. Chlorophyll-carotenoid excitation energy transfer and charge transfer in for the regulation of photosynthesis. Proceedings of the National Academy of Sciences of the United States of America. 116: 3385-3390. PMID 30808735 DOI: 10.1073/pnas.1819011116  0.44
2018 Park S, Fischer AL, Steen CJ, Iwai M, Morris JM, Walla PJ, Niyogi KK, Fleming GR. Chlorophyll-Carotenoid Excitation Energy Transfer in High-Light-Exposed Thylakoid Membranes Investigated by Snapshot Transient Absorption Spectroscopy. Journal of the American Chemical Society. PMID 30183270 DOI: 10.1021/jacs.8b04844  0.44
2018 Wittkopp TM, Saroussi S, Yang W, Johnson X, Kim RG, Heinnickel ML, Russell JJ, Phuthong W, Dent RM, Broeckling CD, Peers G, Lohr M, Wollman FA, Niyogi KK, Grossman AR. GreenCut protein CPLD49 of Chlamydomonas reinhardtii associates with thylakoid membranes and is required for cytochrome bf complex accumulation. The Plant Journal : For Cell and Molecular Biology. PMID 29602195 DOI: 10.1111/tpj.13915  0.96
2017 Malnoë A, Schultink A, Shahrasbi S, Rumeau D, Havaux M, Niyogi KK. The Plastid Lipocalin LCNP is Required for Sustained Photoprotective Energy Dissipation in Arabidopsis. The Plant Cell. PMID 29233855 DOI: 10.1105/tpc.17.00536  0.36
2017 Park S, Fischer AL, Li Z, Bassi R, Niyogi KK, Fleming GR. Snapshot Transient Absorption Spectroscopy of Carotenoid Radical Cations in High-Light-Acclimating Thylakoid Membranes. The Journal of Physical Chemistry Letters. PMID 29083901 DOI: 10.1021/acs.jpclett.7b02486  0.44
2017 Leuenberger M, Morris JM, Chan AM, Leonelli L, Niyogi KK, Fleming GR. Dissecting and modeling zeaxanthin- and lutein-dependent nonphotochemical quenching in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America. PMID 28652334 DOI: 10.1073/pnas.1704502114  0.44
2017 Vieler A, Wu G, Tsai CH, Bullard B, Cornish AJ, Harvey C, Reca IB, Thornburg C, Achawanantakun R, Buehl CJ, Campbell MS, Cavalier D, Childs KL, Clark TJ, Deshpande R, ... ... Niyogi KK, et al. Correction: Genome, Functional Gene Annotation, and Nuclear Transformation of the Heterokont Oleaginous Alga Nannochloropsis oceanica CCMP1779. Plos Genetics. 13: e1006802. PMID 28542203 DOI: 10.1371/journal.pgen.1006802  0.44
2017 Roth MS, Cokus SJ, Gallaher SD, Walter A, Lopez D, Erickson E, Endelman B, Westcott D, Larabell CA, Merchant SS, Pellegrini M, Niyogi KK. Chromosome-level genome assembly and transcriptome of the green alga Chromochloris zofingiensis illuminates astaxanthin production. Proceedings of the National Academy of Sciences of the United States of America. PMID 28484037 DOI: 10.1073/pnas.1619928114  0.44
2017 Dall'Osto L, Cazzaniga S, Bressan M, Paleček D, Židek K, Niyogi KK, Fleming GR, Zigmantas D, Bassi R. Two mechanisms for dissipation of excess light in monomeric and trimeric light-harvesting complexes. Nature Plants. 3: 17033. PMID 28394312 DOI: 10.1038/nplants.2017.33  0.44
2016 Allorent G, Lefebvre-Legendre L, Chappuis R, Kuntz M, Truong TB, Niyogi KK, Ulm R, Goldschmidt-Clermont M. UV-B photoreceptor-mediated protection of the photosynthetic machinery in Chlamydomonas reinhardtii. Proceedings of the National Academy of Sciences of the United States of America. PMID 27930292 DOI: 10.1073/pnas.1607695114  1
2016 Li Z, Peers G, Dent RM, Bai Y, Yang SY, Apel W, Leonelli L, Niyogi KK. Evolution of an atypical de-epoxidase for photoprotection in the green lineage. Nature Plants. 2: 16140. PMID 27618685 DOI: 10.1038/nplants.2016.140  0.36
2016 Leonelli L, Erickson E, Lyska D, Niyogi KK. Transient expression in Nicotiana benthamiana for rapid functional analysis of genes involved in non-photochemical quenching and carotenoid biosynthesis. The Plant Journal : For Cell and Molecular Biology. PMID 27407008 DOI: 10.1111/tpj.13268  0.44
2016 Correa-Galvis V, Redekop P, Guan K, Grieß A, Truong TB, Wakao S, Niyogi KK, Jahns P. Photosystem II Subunit PsbS is Involved in the Induction of LHCSR-dependent Energy Dissipation in Chlamydomonas reinhardtii. The Journal of Biological Chemistry. PMID 27358399 DOI: 10.1074/jbc.M116.737312  1
2016 Ballottari M, Truong TB, De Re E, Erickson E, Stella GR, Fleming GR, Bassi R, Niyogi KK. Identification of pH-sensing sites in the Light Harvesting Complex Stress-Related 3 protein essential for triggering non-photochemical quenching in Chlamydomonas reinhardtii. The Journal of Biological Chemistry. PMID 26817847 DOI: 10.1074/jbc.M115.704601  1
2016 Brzezowski P, Sharifi MN, Dent RM, Morhard MK, Niyogi KK, Grimm B. Mg chelatase in chlorophyll synthesis and retrograde signaling in Chlamydomonas reinhardtii: CHLI2 cannot substitute for CHLI1. Journal of Experimental Botany. PMID 26809558 DOI: 10.1093/jxb/erw004  1
2015 Ngan CY, Wong CH, Choi C, Yoshinaga Y, Louie K, Jia J, Chen C, Bowen B, Cheng H, Leonelli L, Kuo R, Baran R, García-Cerdán JG, Pratap A, Wang M, ... ... Niyogi KK, et al. Lineage-specific chromatin signatures reveal a regulator of lipid metabolism in microalgae. Nature Plants. 1: 15107. PMID 27250540 DOI: 10.1038/nplants.2015.107  1
2015 Głowacka K, Kromdijk J, Leonelli L, Niyogi KK, Clemente TE, Long SP. An evaluation of New and established methods to determine T-DNA copy number and homozygosity in transgenic plants. Plant, Cell & Environment. PMID 26670088 DOI: 10.1111/pce.12693  1
2015 Tibiletti T, Hernández-Prieto MA, Matthijs HC, Niyogi KK, Funk C. Deletion of the gene family of small chlorophyll-binding proteins (ScpABCDE) offsets C/N homeostasis in synechocystis PCC 6803. Biochimica Et Biophysica Acta. PMID 26646103 DOI: 10.1016/j.bbabio.2015.11.011  1
2015 Ort DR, Merchant SS, Alric J, Barkan A, Blankenship RE, Bock R, Croce R, Hanson MR, Hibberd JM, Long SP, Moore TA, Moroney J, Niyogi KK, Parry MA, Peralta-Yahya PP, et al. Redesigning photosynthesis to sustainably meet global food and bioenergy demand. Proceedings of the National Academy of Sciences of the United States of America. PMID 26124102 DOI: 10.1073/pnas.1424031112  1
2015 Tietz S, Puthiyaveetil S, Enlow HM, Yarbrough R, Wood M, Semchonok DA, Lowry T, Li Z, Jahns P, Boekema EJ, Lenhert S, Niyogi KK, Kirchhoff H. Functional Implications of Photosystem II Crystal Formation in Photosynthetic Membranes. The Journal of Biological Chemistry. 290: 14091-106. PMID 25897076 DOI: 10.1074/jbc.M114.619841  1
2015 Erickson E, Wakao S, Niyogi KK. Light stress and photoprotection in Chlamydomonas reinhardtii. The Plant Journal : For Cell and Molecular Biology. 82: 449-65. PMID 25758978 DOI: 10.1111/tpj.12825  1
2015 Dent RM, Sharifi MN, Malnoë A, Haglund C, Calderon RH, Wakao S, Niyogi KK. Large-scale insertional mutagenesis of Chlamydomonas supports phylogenomic functional prediction of photosynthetic genes and analysis of classical acetate-requiring mutants. The Plant Journal : For Cell and Molecular Biology. 82: 337-51. PMID 25711437 DOI: 10.1111/tpj.12806  1
2014 Onoa B, Schneider AR, Brooks MD, Grob P, Nogales E, Geissler PL, Niyogi KK, Bustamante C. Atomic force microscopy of photosystem II and its unit cell clustering quantitatively delineate the mesoscale variability in Arabidopsis thylakoids. Plos One. 9: e101470. PMID 25007326 DOI: 10.1371/journal.pone.0101470  1
2014 Brzezowski P, Schlicke H, Richter A, Dent RM, Niyogi KK, Grimm B. The GUN4 protein plays a regulatory role in tetrapyrrole biosynthesis and chloroplast-to-nucleus signalling in Chlamydomonas reinhardtii. The Plant Journal : For Cell and Molecular Biology. 79: 285-98. PMID 24861705 DOI: 10.1111/tpj.12560  1
2014 Wakao S, Chin BL, Ledford HK, Dent RM, Casero D, Pellegrini M, Merchant SS, Niyogi KK. Phosphoprotein SAK1 is a regulator of acclimation to singlet oxygen in Chlamydomonas reinhardtii. Elife. 3: e02286. PMID 24859755 DOI: 10.7554/eLife.02286  1
2014 Clausen CH, Brooks MD, Li TD, Grob P, Kemalyan G, Nogales E, Niyogi KK, Fletcher DA. Dynamic mechanical responses of Arabidopsis thylakoid membranes during PSII-specific illumination. Biophysical Journal. 106: 1864-70. PMID 24806918 DOI: 10.1016/j.bpj.2014.03.016  1
2014 Johnson X, Steinbeck J, Dent RM, Takahashi H, Richaud P, Ozawa S, Houille-Vernes L, Petroutsos D, Rappaport F, Grossman AR, Niyogi KK, Hippler M, Alric J. Proton gradient regulation 5-mediated cyclic electron flow under ATP- or redox-limited conditions: a study of ΔATpase pgr5 and ΔrbcL pgr5 mutants in the green alga Chlamydomonas reinhardtii. Plant Physiology. 165: 438-52. PMID 24623849 DOI: 10.1104/pp.113.233593  1
2014 Shih PM, Zarzycki J, Niyogi KK, Kerfeld CA. Introduction of a synthetic CO2-fixing photorespiratory bypass into a cyanobacterium Journal of Biological Chemistry. 289: 9493-9500. PMID 24558040 DOI: 10.1074/jbc.C113.543132  1
2013 Calderon RH, García-Cerdán JG, Malnoë A, Cook R, Russell JJ, Gaw C, Dent RM, de Vitry C, Niyogi KK. A conserved rubredoxin is necessary for photosystem II accumulation in diverse oxygenic photoautotrophs. The Journal of Biological Chemistry. 288: 26688-96. PMID 23900844 DOI: 10.1074/jbc.M113.487629  1
2013 Brooks MD, Sylak-Glassman EJ, Fleming GR, Niyogi KK. A thioredoxin-like/β-propeller protein maintains the efficiency of light harvesting in Arabidopsis Proceedings of the National Academy of Sciences of the United States of America. 110: E2733-E2740. PMID 23818601 DOI: 10.1073/pnas.1305443110  1
2013 Kobayashi K, Sasaki D, Noguchi K, Fujinuma D, Komatsu H, Kobayashi M, Sato M, Toyooka K, Sugimoto K, Niyogi KK, Wada H, Masuda T. Photosynthesis of root chloroplasts developed in Arabidopsis lines overexpressing GOLDEN2-LIKE transcription factors. Plant & Cell Physiology. 54: 1365-77. PMID 23749810 DOI: 10.1093/pcp/pct086  1
2013 Niyogi KK, Truong TB. Evolution of flexible non-photochemical quenching mechanisms that regulate light harvesting in oxygenic photosynthesis. Current Opinion in Plant Biology. 16: 307-14. PMID 23583332 DOI: 10.1016/j.pbi.2013.03.011  1
2013 Allorent G, Tokutsu R, Roach T, Peers G, Cardol P, Girard-Bascou J, Seigneurin-Berny D, Petroutsos D, Kuntz M, Breyton C, Franck F, Wollman FA, Niyogi KK, Krieger-Liszkay A, Minagawa J, et al. A dual strategy to cope with high light in Chlamydomonas reinhardtii. The Plant Cell. 25: 545-57. PMID 23424243 DOI: 10.1105/tpc.112.108274  1
2013 Duanmu D, Casero D, Dent RM, Gallaher S, Yang W, Rockwell NC, Martin SS, Pellegrini M, Niyogi KK, Merchant SS, Grossman AR, Lagarias JC. Retrograde bilin signaling enables Chlamydomonas greening and phototrophic survival. Proceedings of the National Academy of Sciences of the United States of America. 110: 3621-6. PMID 23345435 DOI: 10.1073/pnas.1222375110  1
2013 Heinnickel ML, Alric J, Wittkopp T, Yang W, Catalanotti C, Dent R, Niyogi KK, Wollman FA, Grossman AR. Novel thylakoid membrane GreenCut protein CPLD38 impacts accumulation of the cytochrome b6f complex and associated regulatory processes. The Journal of Biological Chemistry. 288: 7024-36. PMID 23303190 DOI: 10.1074/jbc.M112.427476  1
2013 Caliandro R, Nagel KA, Kastenholz B, Bassi R, Li Z, Niyogi KK, Pogson BJ, Schurr U, Matsubara S. Effects of altered α- and β-branch carotenoid biosynthesis on photoprotection and whole-plant acclimation of Arabidopsis to photo-oxidative stress. Plant, Cell & Environment. 36: 438-53. PMID 22860767 DOI: 10.1111/j.1365-3040.2012.02586.x  1
2012 Vieler A, Wu G, Tsai CH, Bullard B, Cornish AJ, Harvey C, Reca IB, Thornburg C, Achawanantakun R, Buehl CJ, Campbell MS, Cavalier D, Childs KL, Clark TJ, Deshpande R, ... ... Niyogi KK, et al. Genome, functional gene annotation, and nuclear transformation of the heterokont oleaginous alga Nannochloropsis oceanica CCMP1779. Plos Genetics. 8: e1003064. PMID 23166516 DOI: 10.1371/journal.pgen.1003064  1
2012 Cazzaniga S, Li Z, Niyogi KK, Bassi R, Dall'Osto L. The Arabidopsis szl1 mutant reveals a critical role of β-carotene in photosystem I photoprotection. Plant Physiology. 159: 1745-58. PMID 23029671 DOI: 10.1104/pp.112.201137  1
2012 Tran PT, Sharifi MN, Poddar S, Dent RM, Niyogi KK. Intragenic enhancers and suppressors of phytoene desaturase mutations in Chlamydomonas reinhardtii. Plos One. 7: e42196. PMID 22912689 DOI: 10.1371/journal.pone.0042196  1
2012 Zaks J, Amarnath K, Kramer DM, Niyogi KK, Fleming GR. A kinetic model of rapidly reversible nonphotochemical quenching. Proceedings of the National Academy of Sciences of the United States of America. 109: 15757-62. PMID 22891305 DOI: 10.1073/pnas.1211017109  1
2012 Amarnath K, Zaks J, Park SD, Niyogi KK, Fleming GR. Fluorescence lifetime snapshots reveal two rapidly reversible mechanisms of photoprotection in live cells of Chlamydomonas reinhardtii Proceedings of the National Academy of Sciences of the United States of America. 109: 8405-8410. PMID 22586081 DOI: 10.1073/pnas.1205303109  1
2012 Fischer BB, Ledford HK, Wakao S, Huang SG, Casero D, Pellegrini M, Merchant SS, Koller A, Eggen RI, Niyogi KK. SINGLET OXYGEN RESISTANT 1 links reactive electrophile signaling to singlet oxygen acclimation in Chlamydomonas reinhardtii. Proceedings of the National Academy of Sciences of the United States of America. 109: E1302-11. PMID 22529359 DOI: 10.1073/pnas.1116843109  1
2012 Li Z, Keasling JD, Niyogi KK. Overlapping photoprotective function of vitamin E and carotenoids in Chlamydomonas. Plant Physiology. 158: 313-23. PMID 22080601 DOI: 10.1104/pp.111.181230  1
2011 Kilian O, Benemann CS, Niyogi KK, Vick B. High-efficiency homologous recombination in the oil-producing alga Nannochloropsis sp. Proceedings of the National Academy of Sciences of the United States of America. 108: 21265-9. PMID 22123974 DOI: 10.1073/pnas.1105861108  1
2011 Brooks MD, Niyogi KK. Use of a pulse-amplitude modulated chlorophyll fluorometer to study the efficiency of photosynthesis in Arabidopsis plants. Methods in Molecular Biology (Clifton, N.J.). 775: 299-310. PMID 21863450 DOI: 10.1007/978-1-61779-237-3_16  1
2011 Bonente G, Ballottari M, Truong TB, Morosinotto T, Ahn TK, Fleming GR, Niyogi KK, Bassi R. Analysis of LHcSR3, a protein essential for feedback de-excitation in the green alga Chlamydomonas reinhardtii Plos Biology. 9. PMID 21267060 DOI: 10.1371/journal.pbio.1000577  1
2011 Murchie EH, Niyogi KK. Manipulation of photoprotection to improve plant photosynthesis. Plant Physiology. 155: 86-92. PMID 21084435 DOI: 10.1104/pp.110.168831  1
2010 Fischer BB, Eggen RI, Niyogi KK. Characterization of singlet oxygen-accumulating mutants isolated in a screen for altered oxidative stress response in Chlamydomonas reinhardtii. Bmc Plant Biology. 10: 279. PMID 21167020 DOI: 10.1186/1471-2229-10-279  1
2010 Jung HS, Okegawa Y, Shih PM, Kellogg E, Abdel-Ghany SE, Pilon M, Sjölander K, Shikanai T, Niyogi KK. Arabidopsis thaliana PGR7 encodes a conserved chloroplast protein that is necessary for efficient photosynthetic electron transport. Plos One. 5: e11688. PMID 20657737 DOI: 10.1371/journal.pone.0011688  1
2010 Terauchi AM, Peers G, Kobayashi MC, Niyogi KK, Merchant SS. Trophic status of Chlamydomonas reinhardtii influences the impact of iron deficiency on photosynthesis. Photosynthesis Research. 105: 39-49. PMID 20535560 DOI: 10.1007/s11120-010-9562-8  1
2010 Grossman AR, Karpowicz SJ, Heinnickel M, Dewez D, Hamel B, Dent R, Niyogi KK, Johnson X, Alric J, Wollman FA, Li H, Merchant SS. Phylogenomic analysis of the Chlamydomonas genome unmasks proteins potentially involved in photosynthetic function and regulation. Photosynthesis Research. 106: 3-17. PMID 20490922 DOI: 10.1007/s11120-010-9555-7  1
2010 Meinecke L, Alawady A, Schroda M, Willows R, Kobayashi MC, Niyogi KK, Grimm B, Beck CF. Chlorophyll-deficient mutants of Chlamydomonas reinhardtii that accumulate magnesium protoporphyrin IX. Plant Molecular Biology. 72: 643-58. PMID 20127142 DOI: 10.1007/s11103-010-9604-9  1
2010 Jung HS, Niyogi KK. Mutations in Arabidopsis YCF20-like genes affect thermal dissipation of excess absorbed light energy. Planta. 231: 923-37. PMID 20087601 DOI: 10.1007/s00425-010-1098-9  1
2009 Cohu CM, Abdel-Ghany SE, Gogolin Reynolds KA, Onofrio AM, Bodecker JR, Kimbrel JA, Niyogi KK, Pilon M. Copper delivery by the copper chaperone for chloroplast and cytosolic copper/zinc-superoxide dismutases: regulation and unexpected phenotypes in an Arabidopsis mutant. Molecular Plant. 2: 1336-50. PMID 19969519 DOI: 10.1093/mp/ssp084  1
2009 Peers G, Truong TB, Ostendorf E, Busch A, Elrad D, Grossman AR, Hippler M, Niyogi KK. An ancient light-harvesting protein is critical for the regulation of algal photosynthesis. Nature. 462: 518-21. PMID 19940928 DOI: 10.1038/nature08587  1
2009 Sirikhachornkit A, Shin JW, Baroli I, Niyogi KK. Replacement of alpha-tocopherol by beta-tocopherol enhances resistance to photooxidative stress in a xanthophyll-deficient strain of Chlamydomonas reinhardtii. Eukaryotic Cell. 8: 1648-57. PMID 19717743 DOI: 10.1128/EC.00124-09  1
2009 Li Z, Wakao S, Fischer BB, Niyogi KK. Sensing and responding to excess light. Annual Review of Plant Biology. 60: 239-60. PMID 19575582 DOI: 10.1146/annurev.arplant.58.032806.103844  1
2009 Li Z, Ahn TK, Avenson TJ, Ballottari M, Cruz JA, Kramer DM, Bassi R, Fleming GR, Keasling JD, Niyogi KK. Lutein accumulation in the absence of zeaxanthin restores nonphotochemical quenching in the Arabidopsis thaliana npq1 mutant. The Plant Cell. 21: 1798-812. PMID 19549928 DOI: 10.1105/tpc.109.066571  1
2009 Kim EH, Li XP, Razeghifard R, Anderson JM, Niyogi KK, Pogson BJ, Chow WS. The multiple roles of light-harvesting chlorophyll a/b-protein complexes define structure and optimize function of Arabidopsis chloroplasts: a study using two chlorophyll b-less mutants. Biochimica Et Biophysica Acta. 1787: 973-84. PMID 19406099 DOI: 10.1016/j.bbabio.2009.04.009  1
2009 Gutman BL, Niyogi KK. Evidence for base excision repair of oxidative DNA damage in chloroplasts of Arabidopsis thaliana. The Journal of Biological Chemistry. 284: 17006-12. PMID 19372224 DOI: 10.1074/jbc.M109.008342  1
2009 Jung HS, Niyogi KK. Quantitative genetic analysis of thermal dissipation in Arabidopsis. Plant Physiology. 150: 977-86. PMID 19339502 DOI: 10.1104/pp.109.137828  1
2009 Avenson TJ, Tae KA, Niyogi KK, Ballottari M, Bassi R, Fleming GR. Lutein can act as a switchable charge transfer quencher in the CP26 light-harvesting complex Journal of Biological Chemistry. 284: 2830-2835. PMID 18990705 DOI: 10.1074/jbc.M807192200  1
2009 Ahn TK, Avenson TJ, Peers G, Li Z, Dall'Osto L, Bassi R, Niyogi KK, Fleming GR. Investigating energy partitioning during photosynthesis using an expanded quantum yield convention Chemical Physics. 357: 151-158. DOI: 10.1016/j.chemphys.2008.12.003  1
2009 Niyogi KK. Photoprotection and High Light Responses The Chlamydomonas Sourcebook 3-Vol Set. 2: 847-870. DOI: 10.1016/B978-0-12-370873-1.00031-9  1
2008 Cheng YC, Ahn TK, Avenson TJ, Zigmantas D, Niyogi KK, Ballottari M, Bassi R, Fleming GR. Kinetic modeling of charge-transfer quenching in the CP29 minor complex. The Journal of Physical Chemistry. B. 112: 13418-23. PMID 18826191 DOI: 10.1021/jp802730c  0.44
2008 Ahn TK, Avenson TJ, Ballottari M, Cheng YC, Niyogi KK, Bassi R, Fleming GR. Architecture of a charge-transfer state regulating light harvesting in a plant antenna protein Science. 320: 794-797. PMID 18467588 DOI: 10.1126/science.1154800  1
2008 Peers G, Niyogi KK. Pond scum genomics: the genomes of Chlamydomonas and Ostreococcus. The Plant Cell. 20: 502-7. PMID 18359853 DOI: 10.1105/tpc.107.056556  1
2008 Avenson TJ, Tae KA, Zigmantas D, Niyogi KK, Li Z, Ballottari M, Bassi R, Fleming GR. Zeaxanthin radical cation formation in minor light-harvesting complexes of higher plant antenna Journal of Biological Chemistry. 283: 3550-3558. PMID 17991753 DOI: 10.1074/jbc.M705645200  1
2008 Cheng YC, Ahn TK, Avenson TJ, Zigmantas D, Niyogi KK, Ballottari M, Bassi R, Fleming GR. Kinetic modeling of charge-transfer quenching in the CP29 minor complex Journal of Physical Chemistry B. 112: 13418-13423. DOI: 10.1021/jp802730c  1
2007 Merchant SS, Prochnik SE, Vallon O, Harris EH, Karpowicz SJ, Witman GB, Terry A, Salamov A, Fritz-Laylin LK, Maréchal-Drouard L, Marshall WF, Qu LH, Nelson DR, Sanderfoot AA, Spalding MH, ... ... Niyogi K, et al. The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science (New York, N.Y.). 318: 245-50. PMID 17932292 DOI: 10.1126/science.1143609  1
2007 Ledford HK, Chin BL, Niyogi KK. Acclimation to singlet oxygen stress in Chlamydomonas reinhardtii. Eukaryotic Cell. 6: 919-30. PMID 17435007 DOI: 10.1128/EC.00207-06  1
2006 Golan T, Müller-Moulé P, Niyogi KK. Photoprotection mutants of Arabidopsis thaliana acclimate to high light by increasing photosynthesis and specific antioxidants. Plant, Cell & Environment. 29: 879-87. PMID 17087471 DOI: 10.1111/j.1365-3040.2005.01467.x  1
2006 Shao N, Vallon O, Dent R, Niyogi KK, Beck CF. Defects in the cytochrome b6/f complex prevent light-induced expression of nuclear genes involved in chlorophyll biosynthesis. Plant Physiology. 141: 1128-37. PMID 16679422 DOI: 10.1104/pp.106.081059  1
2005 Abdel-Ghany SE, Müller-Moulé P, Niyogi KK, Pilon M, Shikanai T. Two P-type ATPases are required for copper delivery in Arabidopsis thaliana chloroplasts. The Plant Cell. 17: 1233-51. PMID 15772282 DOI: 10.1105/tpc.104.030452  1
2005 Holt NE, Zigmantas D, Valkunas L, Li XP, Niyogi KK, Fleming GR. Carotenoid cation formation and the regulation of photosynthetic light harvesting. Science (New York, N.Y.). 307: 433-6. PMID 15662017 DOI: 10.1126/science.1105833  1
2005 Dent RM, Haglund CM, Chin BL, Kobayashi MC, Niyogi KK. Functional genomics of eukaryotic photosynthesis using insertional mutagenesis of Chlamydomonas reinhardtii. Plant Physiology. 137: 545-56. PMID 15653810 DOI: 10.1104/pp.104.055244  1
2005 Niyogi KK, Li XP, Rosenberg V, Jung HS. Is PsbS the site of non-photochemical quenching in photosynthesis? Journal of Experimental Botany. 56: 375-82. PMID 15611143 DOI: 10.1093/jxb/eri056  1
2005 Ledford HK, Niyogi KK. Singlet oxygen and photo-oxidative stress management in plants and algae Plant, Cell and Environment. 28: 1037-1045. DOI: 10.1111/j.1365-3040.2005.01374.x  1
2004 Anwaruzzaman M, Chin BL, Li XP, Lohr M, Martinez DA, Niyogi KK. Genomic analysis of mutants affecting xanthophyll biosynthesis and regulation of photosynthetic light harvesting in Chlamydomonas reinhardtii. Photosynthesis Research. 82: 265-76. PMID 16143839 DOI: 10.1007/s11120-004-2439-y  1
2004 McCarthy SS, Kobayashi MC, Niyogi KK. White mutants of Chlamydomonas reinhardtii are defective in phytoene synthase. Genetics. 168: 1249-57. PMID 15579683 DOI: 10.1534/genetics.104.030635  1
2004 Ledford HK, Baroli I, Shin JW, Fischer BB, Eggen RI, Niyogi KK. Comparative profiling of lipid-soluble antioxidants and transcripts reveals two phases of photo-oxidative stress in a xanthophyll-deficient mutant of Chlamydomonas reinhardtii. Molecular Genetics and Genomics : Mgg. 272: 470-9. PMID 15517390 DOI: 10.1007/s00438-004-1078-5  1
2004 Holt NE, Fleming GR, Niyogi KK. Toward an understanding of the mechanism of nonphotochemical quenching in green plants. Biochemistry. 43: 8281-9. PMID 15222740 DOI: 10.1021/bi0494020  1
2004 Gutman BL, Niyogi KK. Chlamydomonas and Arabidopsis. A dynamic duo. Plant Physiology. 135: 607-10. PMID 15208408 DOI: 10.1104/pp.104.041491  1
2004 Li XP, Gilmore AM, Caffarri S, Bassi R, Golan T, Kramer D, Niyogi KK. Regulation of photosynthetic light harvesting involves intrathylakoid lumen pH sensing by the PsbS protein. The Journal of Biological Chemistry. 279: 22866-74. PMID 15033974 DOI: 10.1074/jbc.M402461200  1
2004 Müller-Moulé P, Golan T, Niyogi KK. Ascorbate-deficient mutants of Arabidopsis grow in high light despite chronic photooxidative stress. Plant Physiology. 134: 1163-72. PMID 14963245 DOI: 10.1104/pp.103.032375  1
2004 Baroli I, Gutman BL, Ledford HK, Shin JW, Chin BL, Havaux M, Niyogi KK. Photo-oxidative stress in a xanthophyll-deficient mutant of Chlamydomonas. The Journal of Biological Chemistry. 279: 6337-44. PMID 14665619 DOI: 10.1074/jbc.M312919200  1
2003 Müller-Moulé P, Havaux M, Niyogi KK. Zeaxanthin deficiency enhances the high light sensitivity of an ascorbate-deficient mutant of Arabidopsis. Plant Physiology. 133: 748-60. PMID 12972657 DOI: 10.1104/pp.103.026252  1
2003 Shikanai T, Müller-Moulé P, Munekage Y, Niyogi KK, Pilon M. PAA1, a P-type ATPase of Arabidopsis, functions in copper transport in chloroplasts. The Plant Cell. 15: 1333-46. PMID 12782727 DOI: 10.1105/tpc.011817  1
2003 Ma YZ, Holt NE, Li XP, Niyogi KK, Fleming GR. Evidence for direct carotenoid involvement in the regulation of photosynthetic light harvesting. Proceedings of the National Academy of Sciences of the United States of America. 100: 4377-82. PMID 12676997 DOI: 10.1073/pnas.0736959100  1
2003 Baroli I, Do AD, Yamane T, Niyogi KK. Zeaxanthin accumulation in the absence of a functional xanthophyll cycle protects Chlamydomonas reinhardtii from photooxidative stress. The Plant Cell. 15: 992-1008. PMID 12671093 DOI: 10.1105/tpc.010405  1
2002 Li XP, Phippard A, Pasari J, Niyogi KK. Structure-function analysis of photosystem II subunit S (PsbS) in vivo. Functional Plant Biology : Fpb. 29: 1131-1139. PMID 32689566 DOI: 10.1071/FP02065  0.36
2002 Li XP, Muller-Moule P, Gilmore AM, Niyogi KK. PsbS-dependent enhancement of feedback de-excitation protects photosystem II from photoinhibition. Proceedings of the National Academy of Sciences of the United States of America. 99: 15222-7. PMID 12417767 DOI: 10.1073/pnas.232447699  1
2002 Elrad D, Niyogi KK, Grossman AR. A major light-harvesting polypeptide of photosystem II functions in thermal dissipation. The Plant Cell. 14: 1801-16. PMID 12172023 DOI: 10.1105/tpc.002154  1
2002 Li XP, Gilmore AM, Niyogi KK. Molecular and global time-resolved analysis of a psbS gene dosage effect on pH- and xanthophyll cycle-dependent nonphotochemical quenching in photosystem II. The Journal of Biological Chemistry. 277: 33590-7. PMID 12110676 DOI: 10.1074/jbc.M204797200  1
2002 Soupene E, King N, Feild E, Liu P, Niyogi KK, Huang CH, Kustu S. Rhesus expression in a green alga is regulated by CO(2). Proceedings of the National Academy of Sciences of the United States of America. 99: 7769-73. PMID 12032358 DOI: 10.1073/pnas.112225599  1
2002 Müller-Moulé P, Conklin PL, Niyogi KK. Ascorbate deficiency can limit violaxanthin de-epoxidase activity in vivo. Plant Physiology. 128: 970-7. PMID 11891252 DOI: 10.1104/pp.010924  1
2002 Li XP, Phippard A, Pasari J, Niyogi KK. Structure-function analysis of photosystem II subunit S (PsbS) in vivo Functional Plant Biology. 29: 1131-1139. DOI: 10.1071/FP02065  1
2001 Dent RM, Han M, Niyogi KK. Functional genomics of plant photosynthesis in the fast lane using Chlamydomonas reinhardtii Trends in Plant Science. 6: 364-371. PMID 11495790 DOI: 10.1016/S1360-1385(01)02018-0  1
2001 Polle JEW, Niyogi KK, Melis A. Absence of lutein, violaxanthin and neoxanthin affects the functional chlorophyll antenna size of photosystem-II but not that of photosystem-I in the green alga Chlamydomonas reinhardtii Plant and Cell Physiology. 42: 482-491. PMID 11382814  1
2001 Müller P, Li XP, Niyogi KK. Non-photochemical quenching. A response to excess light energy Plant Physiology. 125: 1558-1566. PMID 11299337 DOI: 10.1104/pp.125.4.1558  1
2000 Baroli I, Niyogi KK, Barber J, Heifetz P. Molecular genetics of xanthophyll-dependent photoprotection in green algae and plants Philosophical Transactions of the Royal Society B: Biological Sciences. 355: 1385-1394. PMID 11127993  1
2000 Niyogi KK. Safety valves for photosynthesis Current Opinion in Plant Biology. 3: 455-460. PMID 11074375 DOI: 10.1016/S1369-5266(00)00113-8  1
2000 Havaux M, Bonfils JP, Lütz C, Niyogi KK. Photodamage of the photosynthetic apparatus and its dependence on the leaf developmental stage in the npq1 Arabidopsis mutant deficient in the xanthophyll cycle enzyme violaxanthin de-epoxidase. Plant Physiology. 124: 273-84. PMID 10982442  1
2000 Li XP, Björkman O, Shih C, Grossman AR, Rosenquist M, Jansson S, Niyogi KK. A pigment-binding protein essential for regulation of photosynthetic light harvesting Nature. 403: 391-395. PMID 10667783 DOI: 10.1038/35000131  1
1999 Havaux M, Niyogi KK. The violaxanthin cycle protects plants from photooxidative damage by more than one mechanism Proceedings of the National Academy of Sciences of the United States of America. 96: 8762-8767. PMID 10411949 DOI: 10.1073/pnas.96.15.8762  1
1999 Niyogi KK. Photoprotection revisited: Genetic and molecular approaches Annual Review of Plant Biology. 50: 333-359.  1
1998 Pogson BJ, Niyogi KK, Björkman O, DellaPenna D. Altered xanthophyll compositions adversely affect chlorophyll accumulation and nonphotochemical quenching in Arabidopsis mutants Proceedings of the National Academy of Sciences of the United States of America. 95: 13324-13329. PMID 9789087 DOI: 10.1073/pnas.95.22.13324  1
1998 Niyogi KK, Grossman AR, Björkman O. Arabidopsis mutants define a central role for the xanthophyll cycle in the regulation of photosynthetic energy conversion Plant Cell. 10: 1121-1134. PMID 9668132 DOI: 10.1105/tpc.10.7.1121  1
1997 Niyogi KK, Björkman O, Grossman AR. Chlamydomonas xanthophyll cycle mutants identified by video imaging of chlorophyll fluorescence quenching Plant Cell. 9: 1369-1380. DOI: 10.1105/tpc.9.8.1369  1
1997 Niyogi KK, Björkman O, Grossman AR. The roles of specific xanthophylls in photoprotection Proceedings of the National Academy of Sciences of the United States of America. 94: 14162-14167. DOI: 10.1073/pnas.94.25.14162  1
1997 Zhang L, Niyogi KK, Baroli I, Nemson JA, Grossman AR, Melis A. DNA insertional mutagenesis for the elucidation of a Photosystem II repair process in the green alga Chlamydomonas reinhardtii Photosynthesis Research. 53: 173-184.  1
1993 Niyogi KK, Last RL, Fink GR, Keith B. Suppressors of trp1 fluorescence identify a new arabidopsis gene, TRP4, encoding the anthranilate synthase beta subunit. The Plant Cell. 5: 1011-27. PMID 8400875 DOI: 10.1105/tpc.5.9.1011  1
1992 Niyogi KK, Fink GR. Two anthranilate synthase genes in arabidopsis: Defense-related regulation of the tryptophan pathway Plant Cell. 4: 721-733. PMID 1392592  1
1987 Niyogi K, Kennel SJ, Terzaghi-Howe M. Analysis of differentiation antigens on normal and carcinogen-altered rat epithelial cells in vivo and in culture Differentiation. 34: 40-49. PMID 3301487 DOI: 10.1111/j.1432-0436.1987.tb00049.x  1
1986 Beer M, Varkey J, Brantley J, Niyogi K. Electron microscopic studies of chromosomal proteins Annals of the New York Academy of Sciences. 140-148. PMID 3471121 DOI: 10.1111/j.1749-6632.1986.tb34508.x  1
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