Phoebe Stewart - Publications

Affiliations: 
Vanderbilt University, Nashville, TN 
Area:
General Biophysics, Microbiology Biology

56 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Nemerow GR, Stewart PL. Insights into Adenovirus Uncoating from Interactions with Integrins and Mediators of Host Immunity. Viruses. 8. PMID 28009821 DOI: 10.3390/v8120337  0.44
2015 Bruckman MA, Randolph LN, Gulati NM, Stewart PL, Steinmetz NF. Silica-coated Gd(DOTA)-loaded protein nanoparticles enable magnetic resonance imaging of macrophages. Journal of Materials Chemistry. B, Materials For Biology and Medicine. 3: 7503-7510. PMID 26659591 DOI: 10.1039/C5TB01014D  0.44
2015 Fox TL, Tang S, Horton JM, Holdaway HA, Zhao B, Zhu L, Stewart PL. In Situ Characterization of Binary Mixed Polymer Brush-Grafted Silica Nanoparticles in Aqueous and Organic Solvents by Cryo-Electron Tomography. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 26174179 DOI: 10.1021/acs.langmuir.5b01739  0.44
2015 Tang S, Fox TL, Lo TY, Horton JM, Ho RM, Zhao B, Stewart PL, Zhu L. Environmentally responsive self-assembly of mixed poly(tert-butyl acrylate)-polystyrene brush-grafted silica nanoparticles in selective polymer matrices. Soft Matter. 11: 5501-12. PMID 26061172 DOI: 10.1039/c5sm00193e  0.44
2015 Baker BY, Gulati S, Shi W, Wang B, Stewart PL, Palczewski K. Crystallization of proteins from crude bovine rod outer segments. Methods in Enzymology. 557: 439-58. PMID 25950977 DOI: 10.1016/bs.mie.2014.11.045  0.44
2015 Chariou PL, Lee KL, Wen AM, Gulati NM, Stewart PL, Steinmetz NF. Detection and imaging of aggressive cancer cells using an epidermal growth factor receptor (EGFR)-targeted filamentous plant virus-based nanoparticle. Bioconjugate Chemistry. 26: 262-9. PMID 25611133 DOI: 10.1021/bc500545z  0.44
2014 Huynh KW, Cohen MR, Chakrapani S, Holdaway HA, Stewart PL, Moiseenkova-Bell VY. Structural insight into the assembly of TRPV channels. Structure (London, England : 1993). 22: 260-8. PMID 24373766 DOI: 10.1016/j.str.2013.11.008  0.44
2014 Villarreal SA, Stewart PL. CryoEM and image sorting for flexible protein/DNA complexes. Journal of Structural Biology. 187: 76-83. PMID 24333094 DOI: 10.1016/j.jsb.2013.12.002  0.44
2014 Aiyegbo MS, Eli IM, Spiller BW, Williams DR, Kim R, Lee DE, Liu T, Li S, Stewart PL, Crowe JE. Differential accessibility of a rotavirus VP6 epitope in trimers comprising type I, II, or III channels as revealed by binding of a human rotavirus VP6-specific antibody. Journal of Virology. 88: 469-76. PMID 24155406 DOI: 10.1128/JVI.01665-13  0.44
2013 Irons EE, Flatt JW, Doronin K, Fox TL, Acchione M, Stewart PL, Shayakhmetov DM. Coagulation factor binding orientation and dimerization may influence infectivity of adenovirus-coagulation factor complexes. Journal of Virology. 87: 9610-9. PMID 23804638 DOI: 10.1128/JVI.01070-13  0.44
2013 Villarreal SA, Pattanayek R, Williams DR, Mori T, Qin X, Johnson CH, Egli M, Stewart PL. CryoEM and molecular dynamics of the circadian KaiB-KaiC complex indicates that KaiB monomers interact with KaiC and block ATP binding clefts. Journal of Molecular Biology. 425: 3311-24. PMID 23796516 DOI: 10.1016/j.jmb.2013.06.018  0.44
2013 Kendall A, Williams D, Bian W, Stewart PL, Stubbs G. Barley stripe mosaic virus: structure and relationship to the tobamoviruses. Virology. 443: 265-70. PMID 23725818 DOI: 10.1016/j.virol.2013.05.010  0.44
2013 Aiyegbo MS, Sapparapu G, Spiller BW, Eli IM, Williams DR, Kim R, Lee DE, Liu T, Li S, Woods VL, Nannemann DP, Meiler J, Stewart PL, Crowe JE. Human rotavirus VP6-specific antibodies mediate intracellular neutralization by binding to a quaternary structure in the transcriptional pore. Plos One. 8: e61101. PMID 23671563 DOI: 10.1371/journal.pone.0061101  0.44
2013 Flatt JW, Kim R, Smith JG, Nemerow GR, Stewart PL. An intrinsically disordered region of the adenovirus capsid is implicated in neutralization by human alpha defensin 5. Plos One. 8: e61571. PMID 23620768 DOI: 10.1371/journal.pone.0061571  0.44
2013 Shi J, Koteiche HA, McDonald ET, Fox TL, Stewart PL, McHaourab HS. Cryoelectron microscopy analysis of small heat shock protein 16.5 (Hsp16.5) complexes with T4 lysozyme reveals the structural basis of multimode binding. The Journal of Biological Chemistry. 288: 4819-30. PMID 23277356 DOI: 10.1074/jbc.M112.388132  0.44
2013 Lindert S, Stewart PL, Meiler J. Computational determination of the orientation of a heat repeat-like domain of DNA-PKcs. Computational Biology and Chemistry. 42: 1-4. PMID 23246775 DOI: 10.1016/j.compbiolchem.2012.11.001  0.44
2013 Kendall A, Bian W, Maris A, Azzo C, Groom J, Williams D, Shi J, Stewart PL, Wall JS, Stubbs G. A common structure for the potexviruses. Virology. 436: 173-8. PMID 23245732 DOI: 10.1016/j.virol.2012.11.008  0.44
2012 Flatt JW, Fox TL, Makarova N, Blackwell JL, Dmitriev IP, Kashentseva EA, Curiel DT, Stewart PL. CryoEM visualization of an adenovirus capsid-incorporated HIV antigen. Plos One. 7: e49607. PMID 23166728 DOI: 10.1371/journal.pone.0049607  0.44
2012 Doronin K, Flatt JW, Di Paolo NC, Khare R, Kalyuzhniy O, Acchione M, Sumida JP, Ohto U, Shimizu T, Akashi-Takamura S, Miyake K, MacDonald JW, Bammler TK, Beyer RP, Farin FM, ... Stewart PL, et al. Coagulation factor X activates innate immunity to human species C adenovirus. Science (New York, N.Y.). 338: 795-8. PMID 23019612 DOI: 10.1126/science.1226625  0.44
2012 Nemerow GR, Stewart PL, Reddy VS. Structure of human adenovirus. Current Opinion in Virology. 2: 115-21. PMID 22482707 DOI: 10.1016/j.coviro.2011.12.008  0.44
2012 Lindert S, Alexander N, Wötzel N, Karaka? M, Stewart PL, Meiler J. EM-fold: de novo atomic-detail protein structure determination from medium-resolution density maps. Structure (London, England : 1993). 20: 464-78. PMID 22405005 DOI: 10.1016/j.str.2012.01.023  0.44
2012 Lindert S, Hofmann T, Wötzel N, Karaka? M, Stewart PL, Meiler J. Ab initio protein modeling into CryoEM density maps using EM-Fold. Biopolymers. 97: 669-77. PMID 22302372 DOI: 10.1002/bip.22027  0.44
2011 Henderson R, Chen S, Chen JZ, Grigorieff N, Passmore LA, Ciccarelli L, Rubinstein JL, Crowther RA, Stewart PL, Rosenthal PB. Tilt-pair analysis of images from a range of different specimens in single-particle electron cryomicroscopy. Journal of Molecular Biology. 413: 1028-46. PMID 21939668 DOI: 10.1016/j.jmb.2011.09.008  0.44
2011 Pattanayek R, Williams DR, Rossi G, Weigand S, Mori T, Johnson CH, Stewart PL, Egli M. Combined SAXS/EM based models of the S. elongatus post-translational circadian oscillator and its interactions with the output His-kinase SasA. Plos One. 6: e23697. PMID 21887298 DOI: 10.1371/journal.pone.0023697  0.44
2011 Woetzel N, Lindert S, Stewart PL, Meiler J. BCL::EM-Fit: rigid body fitting of atomic structures into density maps using geometric hashing and real space refinement. Journal of Structural Biology. 175: 264-76. PMID 21565271 DOI: 10.1016/j.jsb.2011.04.016  0.44
2011 Johnson CH, Stewart PL, Egli M. The cyanobacterial circadian system: from biophysics to bioevolution. Annual Review of Biophysics. 40: 143-67. PMID 21332358 DOI: 10.1146/annurev-biophys-042910-155317  0.44
2010 Reddy VS, Natchiar SK, Stewart PL, Nemerow GR. Crystal structure of human adenovirus at 3.5 A resolution. Science (New York, N.Y.). 329: 1071-5. PMID 20798318 DOI: 10.1126/science.1187292  0.44
2010 Matthews QL, Fatima A, Tang Y, Perry BA, Tsuruta Y, Komarova S, Timares L, Zhao C, Makarova N, Borovjagin AV, Stewart PL, Wu H, Blackwell JL, Curiel DT. HIV antigen incorporation within adenovirus hexon hypervariable 2 for a novel HIV vaccine approach. Plos One. 5: e11815. PMID 20676400 DOI: 10.1371/journal.pone.0011815  0.44
2010 Smith JG, Silvestry M, Lindert S, Lu W, Nemerow GR, Stewart PL. Insight into the mechanisms of adenovirus capsid disassembly from studies of defensin neutralization. Plos Pathogens. 6: e1000959. PMID 20585634 DOI: 10.1371/journal.ppat.1000959  0.44
2010 Smith JG, Wiethoff CM, Stewart PL, Nemerow GR. Adenovirus. Current Topics in Microbiology and Immunology. 343: 195-224. PMID 20376613 DOI: 10.1007/82_2010_16  0.44
2009 Lindert S, Silvestry M, Mullen TM, Nemerow GR, Stewart PL. Cryo-electron microscopy structure of an adenovirus-integrin complex indicates conformational changes in both penton base and integrin. Journal of Virology. 83: 11491-501. PMID 19726496 DOI: 10.1128/JVI.01214-09  0.44
2009 Lindert S, Staritzbichler R, Wötzel N, Karaka? M, Stewart PL, Meiler J. EM-fold: De novo folding of alpha-helical proteins guided by intermediate-resolution electron microscopy density maps. Structure (London, England : 1993). 17: 990-1003. PMID 19604479 DOI: 10.1016/j.str.2009.06.001  0.44
2009 Silvestry M, Lindert S, Smith JG, Maier O, Wiethoff CM, Nemerow GR, Stewart PL. Cryo-electron microscopy structure of adenovirus type 2 temperature-sensitive mutant 1 reveals insight into the cell entry defect. Journal of Virology. 83: 7375-83. PMID 19458007 DOI: 10.1128/JVI.00331-09  0.44
2009 Lindert S, Stewart PL, Meiler J. Hybrid approaches: applying computational methods in cryo-electron microscopy. Current Opinion in Structural Biology. 19: 218-25. PMID 19339173 DOI: 10.1016/j.sbi.2009.02.010  0.44
2009 McHaourab HS, Godar JA, Stewart PL. Structure and mechanism of protein stability sensors: chaperone activity of small heat shock proteins. Biochemistry. 48: 3828-37. PMID 19323523 DOI: 10.1021/bi900212j  0.44
2009 Kickhoefer VA, Han M, Raval-Fernandes S, Poderycki MJ, Moniz RJ, Vaccari D, Silvestry M, Stewart PL, Kelly KA, Rome LH. Targeting vault nanoparticles to specific cell surface receptors. Acs Nano. 3: 27-36. PMID 19206245 DOI: 10.1021/nn800638x  0.44
2008 Johnson CH, Egli M, Stewart PL. Structural insights into a circadian oscillator. Science (New York, N.Y.). 322: 697-701. PMID 18974343 DOI: 10.1126/science.1150451  0.44
2008 Kendall A, McDonald M, Bian W, Bowles T, Baumgarten SC, Shi J, Stewart PL, Bullitt E, Gore D, Irving TC, Havens WM, Ghabrial SA, Wall JS, Stubbs G. Structure of flexible filamentous plant viruses. Journal of Virology. 82: 9546-54. PMID 18667514 DOI: 10.1128/JVI.00895-08  0.44
2008 Shi J, Williams DR, Stewart PL. A Script-Assisted Microscopy (SAM) package to improve data acquisition rates on FEI Tecnai electron microscopes equipped with Gatan CCD cameras. Journal of Structural Biology. 164: 166-9. PMID 18621546 DOI: 10.1016/j.jsb.2008.05.011  0.44
2008 Pattanayek R, Williams DR, Pattanayek S, Mori T, Johnson CH, Stewart PL, Egli M. Structural model of the circadian clock KaiB-KaiC complex and mechanism for modulation of KaiC phosphorylation. The Embo Journal. 27: 1767-78. PMID 18497745 DOI: 10.1038/emboj.2008.104  0.44
2008 Williams DR, Lee KJ, Shi J, Chen DJ, Stewart PL. Cryo-EM structure of the DNA-dependent protein kinase catalytic subunit at subnanometer resolution reveals alpha helices and insight into DNA binding. Structure (London, England : 1993). 16: 468-77. PMID 18334221 DOI: 10.1016/j.str.2007.12.014  0.44
2007 Stewart PL, Nemerow GR. Cell integrins: commonly used receptors for diverse viral pathogens. Trends in Microbiology. 15: 500-7. PMID 17988871 DOI: 10.1016/j.tim.2007.10.001  0.44
2007 Mori T, Williams DR, Byrne MO, Qin X, Egli M, Mchaourab HS, Stewart PL, Johnson CH. Elucidating the ticking of an in vitro circadian clockwork. Plos Biology. 5: e93. PMID 17388688 DOI: 10.1371/journal.pbio.0050093  0.44
2006 Shi J, Koteiche HA, McHaourab HS, Stewart PL. Cryoelectron microscopy and EPR analysis of engineered symmetric and polydisperse Hsp16.5 assemblies reveals determinants of polydispersity and substrate binding. The Journal of Biological Chemistry. 281: 40420-8. PMID 17079234 DOI: 10.1074/jbc.M608322200  0.44
2006 Saban SD, Silvestry M, Nemerow GR, Stewart PL. Visualization of alpha-helices in a 6-angstrom resolution cryoelectron microscopy structure of adenovirus allows refinement of capsid protein assignments. Journal of Virology. 80: 12049-59. PMID 17005667 DOI: 10.1128/JVI.01652-06  0.44
2006 Mathis JM, Stewart PL, Zhu ZB, Curiel DT. Advanced generation adenoviral virotherapy agents embody enhanced potency based upon CAR-independent tropism. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 12: 2651-6. PMID 16675555 DOI: 10.1158/1078-0432.CCR-06-0497  0.44
2006 Pattanayek R, Williams DR, Pattanayek S, Xu Y, Mori T, Johnson CH, Stewart PL, Egli M. Analysis of KaiA-KaiC protein interactions in the cyano-bacterial circadian clock using hybrid structural methods. The Embo Journal. 25: 2017-28. PMID 16628225 DOI: 10.1038/sj.emboj.7601086  0.44
2005 Koteiche HA, Chiu S, Majdoch RL, Stewart PL, Mchaourab HS. Atomic models by cryo-EM and site-directed spin labeling: application to the N-terminal region of Hsp16.5. Structure (London, England : 1993). 13: 1165-71. PMID 16084388 DOI: 10.1016/j.str.2005.05.006  0.44
2005 Saban SD, Nepomuceno RR, Gritton LD, Nemerow GR, Stewart PL. CryoEM structure at 9A resolution of an adenovirus vector targeted to hematopoietic cells. Journal of Molecular Biology. 349: 526-37. PMID 15890367 DOI: 10.1016/j.jmb.2005.04.034  0.44
2005 Kickhoefer VA, Garcia Y, Mikyas Y, Johansson E, Zhou JC, Raval-Fernandes S, Minoofar P, Zink JI, Dunn B, Stewart PL, Rome LH. Engineering of vault nanocapsules with enzymatic and fluorescent properties. Proceedings of the National Academy of Sciences of the United States of America. 102: 4348-52. PMID 15753293 DOI: 10.1073/pnas.0500929102  0.44
2005 Stewart PL, Makabi M, Lang J, Dickey-Sims C, Robertson AJ, Coffman JA, Suprenant KA. Sea urchin vault structure, composition, and differential localization during development. Bmc Developmental Biology. 5: 3. PMID 15710043 DOI: 10.1186/1471-213X-5-3  0.44
2004 Varghese R, Mikyas Y, Stewart PL, Ralston R. Postentry neutralization of adenovirus type 5 by an antihexon antibody. Journal of Virology. 78: 12320-32. PMID 15507619 DOI: 10.1128/JVI.78.22.12320-12332.2004  0.44
2004 Mikyas Y, Makabi M, Raval-Fernandes S, Harrington L, Kickhoefer VA, Rome LH, Stewart PL. Cryoelectron microscopy imaging of recombinant and tissue derived vaults: localization of the MVP N termini and VPARP. Journal of Molecular Biology. 344: 91-105. PMID 15504404 DOI: 10.1016/j.jmb.2004.09.021  0.44
2003 Stewart PL, Dermody TS, Nemerow GR. Structural basis of nonenveloped virus cell entry. Advances in Protein Chemistry. 64: 455-91. PMID 13677056 DOI: 10.1016/S0065-3233(03)01013-1  0.44
2003 Wu E, Pache L, Von Seggern DJ, Mullen TM, Mikyas Y, Stewart PL, Nemerow GR. Flexibility of the adenovirus fiber is required for efficient receptor interaction. Journal of Virology. 77: 7225-35. PMID 12805421 DOI: 10.1128/JVI.77.13.7225-7235.2003  0.44
1994 Stewart PL. Integrating cryo-electron microscopy into drug-design strategies Trends in Biotechnology. 12: 429-431. DOI: 10.1016/0167-7799(94)90014-0  0.44
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