James Borneman - Publications

University of California, Riverside, Riverside, CA, United States 
Microbiology Biology

87 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 McNamara MP, Singleton JM, Cadney MD, Ruegger PM, Borneman J, Garland T. Early-life effects of juvenile Western diet and exercise on adult gut microbiome composition in mice. The Journal of Experimental Biology. PMID 33431595 DOI: 10.1242/jeb.239699  0.52
2020 Becker JS, Borneman J, Becker JO. Effect of Heterodera schachtii female age on susceptibility to three fungal hyperparasites in the genus Hyalorbilia Journal of Nematology. 52: 1-12. PMID 33829185 DOI: 10.21307/Jofnem-2020-093  0.52
2020 Ramakrishna C, Mendonca S, Ruegger PM, Kim JH, Borneman J, Cantin EM. Herpes simplex virus infection, Acyclovir and IVIG treatment all independently cause gut dysbiosis. Plos One. 15: e0237189. PMID 32760124 DOI: 10.1371/Journal.Pone.0237189  0.52
2020 Shawki A, Ramirez R, Spalinger MR, Ruegger PM, Sayoc-Becerra A, Santos AN, Chatterjee P, Canale V, Mitchell JD, Macbeth JC, Gries CM, Tremblay ML, Hsiao A, Borneman J, McCole DF. The autoimmune susceptibility gene, , restricts expansion of a novel mouse adherent-invasive . Gut Microbes. 1-20. PMID 32586195 DOI: 10.1080/19490976.2020.1775538  0.52
2020 Kim JH, Ruegger PR, Lebig EG, VanSchalkwyk S, Jeske DR, Hsiao A, Borneman J, Martins-Green M. High Levels of Oxidative Stress Create a Microenvironment That Significantly Decreases the Diversity of the Microbiota in Diabetic Chronic Wounds and Promotes Biofilm Formation. Frontiers in Cellular and Infection Microbiology. 10: 259. PMID 32582564 DOI: 10.3389/Fcimb.2020.00259  0.52
2020 Blacutt A, Ginnan N, Dang T, Bodaghi S, Vidalakis G, Ruegger P, Peacock B, Viravathana P, Campos Vieira F, Drozd C, Jablonska B, Borneman J, McCollum G, Cordoza J, Meloch J, et al. An pipeline to screen and select citrus-associated microbiota with potential anti- Liberibacter asiaticus properties. Applied and Environmental Microbiology. PMID 32086307 DOI: 10.1128/Aem.02883-19  0.44
2019 Ramakrishna C, Corleto J, Ruegger PM, Logan GD, Peacock BB, Mendonca S, Yamaki S, Adamson T, Ermel R, McKemy D, Borneman J, Cantin EM. Dominant Role of the Gut Microbiota in Chemotherapy Induced Neuropathic Pain. Scientific Reports. 9: 20324. PMID 31889131 DOI: 10.1038/S41598-019-56832-X  0.52
2019 Kim JH, Yang B, Tedesco A, Lebig EGD, Ruegger PM, Xu K, Borneman J, Martins-Green M. High Levels of Oxidative Stress and Skin Microbiome are Critical for Initiation and Development of Chronic Wounds in Diabetic Mice. Scientific Reports. 9: 19318. PMID 31848388 DOI: 10.1038/S41598-019-55644-3  0.52
2019 Maier I, Liu J, Ruegger PM, Deutschmann J, Patsch JM, Helbich TH, Borneman J, Schiestl RH. Intestinal bacterial indicator phylotypes associate with impaired DNA double-stranded break sensors but augmented skeletal bone micro-structure. Carcinogenesis. PMID 31840161 DOI: 10.1093/Carcin/Bgz204  0.52
2019 Li J, Wu R, Wang M, Borneman J, Yang J, Zhang KQ. The pH sensing receptor AopalH plays important roles in the nematophagous fungus Arthrobotrys oligospora. Fungal Biology. 123: 547-554. PMID 31196524 DOI: 10.1016/J.Funbio.2019.05.008  0.4
2019 Limon JJ, Tang J, Li D, Wolf AJ, Michelsen KS, Funari V, Gargus M, Nguyen C, Sharma P, Maymi VI, Iliev ID, Skalski JH, Brown J, Landers C, Borneman J, et al. Malassezia Is Associated with Crohn's Disease and Exacerbates Colitis in Mouse Models. Cell Host & Microbe. PMID 30850233 DOI: 10.1016/J.Chom.2019.01.007  0.44
2018 Chang YL, Rossetti M, Vlamakis H, Casero D, Sunga G, Harre N, Miller S, Humphries R, Stappenbeck T, Simpson KW, Sartor RB, Wu G, Lewis J, Bushman F, McGovern DPB, ... ... Borneman J, et al. A screen of Crohn's disease-associated microbial metabolites identifies ascorbate as a novel metabolic inhibitor of activated human T cells. Mucosal Immunology. PMID 29695840 DOI: 10.1038/S41385-018-0022-7  0.44
2018 Cheng Z, Zhao L, Dhall D, Ruegger PM, Borneman J, Frykman PK. Bacterial Microbiome Dynamics in Post Pull-Through Hirschsprung-Associated Enterocolitis (HAEC): An Experimental Study Employing the Endothelin Receptor B-Null Mouse Model. Frontiers in Surgery. 5: 30. PMID 29682507 DOI: 10.3389/Fsurg.2018.00030  0.52
2018 Barr T, Sureshchandra S, Ruegger P, Zhang J, Ma W, Borneman J, Grant K, Messaoudi I. Concurrent gut transcriptome and microbiota profiling following chronic ethanol consumption in nonhuman primates. Gut Microbes. 1-44. PMID 29517944 DOI: 10.1080/19490976.2018.1441663  0.44
2016 Jacobs JP, Goudarzi M, Singh N, Tong M, McHardy IH, Ruegger P, Asadourian M, Moon BH, Ayson A, Borneman J, McGovern DP, Fornace AJ, Braun J, Dubinsky M. A Disease-Associated Microbial and Metabolomics State in Relatives of Pediatric Inflammatory Bowel Disease Patients. Cellular and Molecular Gastroenterology and Hepatology. 2: 750-766. PMID 28174747 DOI: 10.1016/J.Jcmgh.2016.06.004  0.44
2016 Jacobs JP, Lin L, Goudarzi M, Ruegger P, McGovern DP, Fornace AJ, Borneman J, Xia L, Braun J. Microbial, metabolomic, and immunologic dynamics in a relapsing genetic mouse model of colitis induced by T-synthase deficiency. Gut Microbes. 0. PMID 27874308 DOI: 10.1080/19490976.2016.1257469  0.44
2016 Li D, Achkar JP, Haritunians T, Jacobs JP, Hui KY, D'Amato M, Brand S, Radford-Smith G, Halfvarson J, Niess JH, Kugathasan S, Büning C, Schumm LP, Klei L, Ananthakrishnan A, ... ... Borneman J, et al. A pleiotropic missense variant in SLC39A8 is associated with Crohn's disease and human gut microbiome composition. Gastroenterology. PMID 27492617 DOI: 10.1053/J.Gastro.2016.06.051  0.68
2016 Cheema AK, Maier I, Dowdy T, Wang Y, Singh R, Ruegger PM, Borneman J, Fornace AJ, Schiestl RH. Chemopreventive Metabolites Are Correlated with a Change in Intestinal Microbiota Measured in A-T Mice and Decreased Carcinogenesis. Plos One. 11: e0151190. PMID 27073845 DOI: 10.1371/Journal.Pone.0151190  0.68
2016 Volkmann ER, Chang YL, Barroso N, Furst DE, Clements PP, Gorn AH, Roth BE, Conklin JL, Getzug T, Borneman J, McGovern DP, Tong M, Jacobs JP, Braun J. Systemic sclerosis is associated with a unique colonic microbial consortium. Arthritis & Rheumatology (Hoboken, N.J.). PMID 26749064 DOI: 10.1002/Art.39572  0.44
2014 Huang YT, Yang JI, Chrobak M, Borneman J. PRISE2: software for designing sequence-selective PCR primers and probes. Bmc Bioinformatics. 15: 317. PMID 25252611 DOI: 10.1186/1471-2105-15-317  0.68
2014 Ruegger PM, Clark RT, Weger JR, Braun J, Borneman J. Improved resolution of bacteria by high throughput sequence analysis of the rRNA internal transcribed spacer. Journal of Microbiological Methods. 105: 82-7. PMID 25034229 DOI: 10.1016/J.Mimet.2014.07.001  0.68
2014 Tong M, McHardy I, Ruegger P, Goudarzi M, Kashyap PC, Haritunians T, Li X, Graeber TG, Schwager E, Huttenhower C, Fornace AJ, Sonnenburg JL, McGovern DP, Borneman J, Braun J. Reprograming of gut microbiome energy metabolism by the FUT2 Crohn's disease risk polymorphism. The Isme Journal. 8: 2193-206. PMID 24781901 DOI: 10.1038/Ismej.2014.64  0.68
2014 Tanaseichuk O, Borneman J, Jiang T. Phylogeny-based classification of microbial communities. Bioinformatics (Oxford, England). 30: 449-56. PMID 24369151 DOI: 10.1093/Bioinformatics/Btt700  0.68
2014 Treseder KK, Bent E, Borneman J, McGuire KL. Shifts in fungal communities during decomposition of boreal forest litter Fungal Ecology. 10: 58-69. DOI: 10.1016/J.Funeco.2013.02.002  0.68
2013 McHardy IH, Li X, Tong M, Ruegger P, Jacobs J, Borneman J, Anton P, Braun J. HIV Infection is associated with compositional and functional shifts in the rectal mucosal microbiota. Microbiome. 1: 26. PMID 24451087 DOI: 10.1186/2049-2618-1-26  0.68
2013 McHardy IH, Goudarzi M, Tong M, Ruegger PM, Schwager E, Weger JR, Graeber TG, Sonnenburg JL, Horvath S, Huttenhower C, McGovern DP, Fornace AJ, Borneman J, Braun J. Integrative analysis of the microbiome and metabolome of the human intestinal mucosal surface reveals exquisite inter-relationships. Microbiome. 1: 17. PMID 24450808 DOI: 10.1186/2049-2618-1-17  0.68
2013 Tong M, Li X, Wegener Parfrey L, Roth B, Ippoliti A, Wei B, Borneman J, McGovern DP, Frank DN, Li E, Horvath S, Knight R, Braun J. A modular organization of the human intestinal mucosal microbiota and its association with inflammatory bowel disease. Plos One. 8: e80702. PMID 24260458 DOI: 10.1371/Journal.Pone.0080702  0.68
2013 Yamamoto ML, Maier I, Dang AT, Berry D, Liu J, Ruegger PM, Yang JI, Soto PA, Presley LL, Reliene R, Westbrook AM, Wei B, Loy A, Chang C, Braun J, ... Borneman J, et al. Intestinal bacteria modify lymphoma incidence and latency by affecting systemic inflammatory state, oxidative stress, and leukocyte genotoxicity. Cancer Research. 73: 4222-32. PMID 23860718 DOI: 10.1158/0008-5472.Can-13-0022  0.68
2013 Becker JS, Borneman J, Becker JO. Dactylella oviparasitica parasitism of the sugar beet cyst nematode observed in trixenic culture plates Biological Control. 64: 51-56. DOI: 10.1016/J.Biocontrol.2012.10.007  0.68
2013 Benecke S, Jeske DR, Reugger P, Borneman J. Bayes Neutral Zone Classifiers With Applications to Nonparametric Unsupervised Settings Journal of Agricultural, Biological, and Environmental Statistics. 18: 39-52. DOI: 10.1007/S13253-012-0116-8  0.68
2013 Zhang Z, Cui X, Jeske DR, Borneman J. Biclustering scatter plots using data depth measures Statistical Analysis and Data Mining. 6: 102-115. DOI: 10.1002/Sam.11166  0.68
2012 Yang JI, Loffredo A, Borneman J, Becker JO. Biocontrol Efficacy Among Strains of Pochonia chlamydosporia Obtained from a Root-Knot Nematode Suppressive Soil. Journal of Nematology. 44: 67-71. PMID 23483846  0.52
2012 Yang JI, Benecke S, Jeske DR, Rocha FS, Smith Becker J, Timper P, Ole Becker J, Borneman J. Population Dynamics of Dactylella oviparasitica and Heterodera schachtii: Toward a Decision Model for Sugar Beet Planting. Journal of Nematology. 44: 237-44. PMID 23481664  0.52
2012 Yang JI, Ruegger PM, McKenry MV, Becker JO, Borneman J. Correlations between root-associated microorganisms and peach replant disease symptoms in a California soil. Plos One. 7: e46420. PMID 23071565 DOI: 10.1371/Journal.Pone.0046420  0.68
2012 Tanaseichuk O, Borneman J, Jiang T. Separating metagenomic short reads into genomes via clustering. Algorithms For Molecular Biology : Amb. 7: 27. PMID 23009059 DOI: 10.1186/1748-7188-7-27  0.68
2012 Godwin S, Bent E, Borneman J, Pereg L. The role of coral-associated bacterial communities in Australian Subtropical White Syndrome of Turbinaria mesenterina. Plos One. 7: e44243. PMID 22970188 DOI: 10.1371/Journal.Pone.0044243  0.68
2012 Ruegger PM, Bent E, Li W, Jeske DR, Cui X, Braun J, Jiang T, Borneman J. Improving oligonucleotide fingerprinting of rRNA genes by implementation of polony microarray technology. Journal of Microbiological Methods. 90: 235-40. PMID 22640891 DOI: 10.1016/J.Mimet.2012.05.013  0.68
2012 Presley LL, Ye J, Li X, Leblanc J, Zhang Z, Ruegger PM, Allard J, McGovern D, Ippoliti A, Roth B, Cui X, Jeske DR, Elashoff D, Goodglick L, Braun J, ... Borneman J, et al. Host-microbe relationships in inflammatory bowel disease detected by bacterial and metaproteomic analysis of the mucosal-luminal interface. Inflammatory Bowel Diseases. 18: 409-17. PMID 21698720 DOI: 10.1002/Ibd.21793  0.68
2012 Tanaseichuk O, Borneman J, Jiang T. A probabilistic approach to accurate abundance-based binning of metagenomic reads Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7534: 404-416. DOI: 10.1007/978-3-642-33122-0_32  0.68
2011 Zhang Z, Cui X, Jeske DR, Li X, Braun J, Borneman J. Clustering Scatter Plots Using Data Depth Measures. Journal of Biometrics & Biostatistics. 001. PMID 24883225 DOI: 10.4172/2155-6180.S5-001  0.52
2011 Li X, LeBlanc J, Truong A, Vuthoori R, Chen SS, Lustgarten JL, Roth B, Allard J, Ippoliti A, Presley LL, Borneman J, Bigbee WL, Gopalakrishnan V, Graeber TG, Elashoff D, et al. A metaproteomic approach to study human-microbial ecosystems at the mucosal luminal interface. Plos One. 6: e26542. PMID 22132074 DOI: 10.1371/Journal.Pone.0026542  0.68
2011 Ruegger PM, Della Vedova G, Jiang T, Borneman J. Improving probe set selection for microbial community analysis by leveraging taxonomic information of training sequences. Bmc Bioinformatics. 12: 394. PMID 21985453 DOI: 10.1186/1471-2105-12-394  0.68
2010 Yu H, Jeske DR, Ruegger P, Borneman J. Neutral Zone Classifiers Using a Decision-Theoretic Approach With Application to DNA Array Analyses. Journal of Agricultural, Biological, and Environmental Statistics. 15: 474-490. PMID 21769245 DOI: 10.1007/S13253-010-0034-6  0.52
2010 McGuire KL, Bent E, Borneman J, Majumder A, Allison SD, Tresederi KK. Functional diversity in resource use by fungi. Ecology. 91: 2324-32. PMID 20836454 DOI: 10.1890/09-0654.1  0.68
2010 Wei B, Wingender G, Fujiwara D, Chen DY, McPherson M, Brewer S, Borneman J, Kronenberg M, Braun J. Commensal microbiota and CD8+ T cells shape the formation of invariant NKT cells. Journal of Immunology (Baltimore, Md. : 1950). 184: 1218-26. PMID 20048124 DOI: 10.4049/Jimmunol.0902620  0.68
2010 Presley LL, Wei B, Braun J, Borneman J. Bacteria associated with immunoregulatory cells in mice. Applied and Environmental Microbiology. 76: 936-41. PMID 20008175 DOI: 10.1128/Aem.01561-09  0.68
2010 Li W, Ruegger PM, Borneman J, Jiang T. Polony identification using the EM algorithm based on a Gaussian mixture model 10th Ieee International Conference On Bioinformatics and Bioengineering 2010, Bibe 2010. 220-225. DOI: 10.1109/BIBE.2010.43  0.68
2009 Bent E, Loffredo A, Yang JI, McKenry MV, Becker JO, Borneman J. Investigations into peach seedling stunting caused by a replant soil. Fems Microbiology Ecology. 68: 192-200. PMID 19573200 DOI: 10.1111/J.1574-6941.2009.00668.X  0.68
2008 Gao X, Yin B, Borneman J, Becker JO. Assessment of Parasitic Activity of Fusarium Strains Obtained from a Heterodera schachtii-Suppressive Soil. Journal of Nematology. 40: 1-6. PMID 19259511  0.68
2008 Wei B, Su TT, Dalwadi H, Stephan RP, Fujiwara D, Huang TT, Brewer S, Chen L, Arditi M, Borneman J, Rawlings DJ, Braun J. Resident enteric microbiota and CD8+ T cells shape the abundance of marginal zone B cells. European Journal of Immunology. 38: 3411-25. PMID 19009526 DOI: 10.1002/Eji.200838432  0.68
2008 Fujiwara D, Wei B, Presley LL, Brewer S, McPherson M, Lewinski MA, Borneman J, Braun J. Systemic control of plasmacytoid dendritic cells by CD8+ T cells and commensal microbiota. Journal of Immunology (Baltimore, Md. : 1950). 180: 5843-52. PMID 18424703 DOI: 10.4049/Jimmunol.180.9.5843  0.68
2008 Ye J, Lee JW, Presley LL, Bent E, Wei B, Braun J, Schiller NL, Straus DS, Borneman J. Bacteria and bacterial rRNA genes associated with the development of colitis in IL-10(-/-) mice. Inflammatory Bowel Diseases. 14: 1041-50. PMID 18381614 DOI: 10.1002/Ibd.20442  0.68
2008 Bruns TD, Blackwell M, Edwards I, Taylor AFS, Horton T, Zhang N, Kõljalg U, May G, Kuyper TW, Bever JD, Gilbert G, Taylor JW, DeSantis TZ, Pringle A, Borneman J, et al. Preserving accuracy in GenBank Science. 319: 1616. PMID 18356505 DOI: 10.1126/Science.319.5870.1616A  0.68
2008 Fu Q, Ruegger P, Bent E, Chrobak M, Borneman J. PRISE (PRImer SElector): software for designing sequence-selective PCR primers. Journal of Microbiological Methods. 72: 263-7. PMID 18221808 DOI: 10.1016/J.Mimet.2007.12.004  0.68
2008 Fujiwara D, Wei B, Presley LL, Brewer SN, McPherson M, Borneman J, Braun J. 303 Systemic Control of Plasmacytoid Dendritic Cells By CD8+ T Cells and Commensal Microbiota Gastroenterology. 134. DOI: 10.1016/S0016-5085(08)60206-1  0.44
2007 Fu Q, Bent E, Borneman J, Chrobak M, Young NE. Algorithmic approaches to selecting control clones in DNA array hybridization experiments. Journal of Bioinformatics and Computational Biology. 5: 937-61. PMID 17787064 DOI: 10.1142/S0219720007002977  0.68
2007 Borneman J, Becker JO. Identifying microorganisms involved in specific pathogen suppression in soil. Annual Review of Phytopathology. 45: 153-72. PMID 17506652 DOI: 10.1146/Annurev.Phyto.45.062806.094354  0.68
2007 Jeske DR, Liu Z, Bent E, Borneman J. Classification rules that include neutral zones and their application to microbial community profiling Communications in Statistics - Theory and Methods. 36: 1965-1980. DOI: 10.1080/03610920601126514  0.68
2006 Olatinwo R, Becker JO, Borneman J. Suppression of Heterodera schachtii Populations by Dactylella oviparasitica in Four Soils. Journal of Nematology. 38: 345-8. PMID 19259539  0.52
2006 Olatinwo R, Yin B, Becker JO, Borneman J. Suppression of the Plant-Parasitic Nematode Heterodera schachtii by the Fungus Dactylella oviparasitica. Phytopathology. 96: 111-4. PMID 18944211 DOI: 10.1094/Phyto-96-0111  0.68
2006 Olatinwo R, Borneman J, Becker JO. Induction of Beet-Cyst Nematode Suppressiveness by the Fungi Dactylella oviparasitica and Fusarium oxysporum in Field Microplots. Phytopathology. 96: 855-9. PMID 18943750 DOI: 10.1094/Phyto-96-0855  0.68
2006 Bent E, Yin B, Figueroa A, Ye J, Fu Q, Liu Z, McDonald V, Jeske D, Jiang T, Borneman J. Development of a 9600-clone procedure for oligonucleotide fingerprinting of rRNA genes: utilization to identify soil bacterial rRNA genes that correlate in abundance with the development of avocado root rot. Journal of Microbiological Methods. 67: 171-80. PMID 16712989 DOI: 10.1016/J.Mimet.2006.03.023  0.68
2006 Scupham AJ, Presley LL, Wei B, Bent E, Griffith N, McPherson M, Zhu F, Oluwadara O, Rao N, Braun J, Borneman J. Abundant and diverse fungal microbiota in the murine intestine. Applied and Environmental Microbiology. 72: 793-801. PMID 16391120 DOI: 10.1128/Aem.72.1.793-801.2006  0.68
2005 Liu Z, Borneman J, Jiang T. A software system for gene sequence database construction based on fast approximate string matching. International Journal of Bioinformatics Research and Applications. 1: 273-91. PMID 18048136 DOI: 10.1504/Ijbra.2005.007906  0.44
2005 Fu Q, Borneman J, Ye J, Chrobak M. Improved probe selection for DNA arrays using nonparametric kernel density estimation. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 1: 902-5. PMID 17282330 DOI: 10.1109/IEMBS.2005.1616561  0.36
2005 Huang T, Wei B, Velazquez P, Borneman J, Braun J. Commensal microbiota alter the abundance and TCR responsiveness of splenic naïve CD4+ T lymphocytes. Clinical Immunology (Orlando, Fla.). 117: 221-30. PMID 16290233 DOI: 10.1016/J.Clim.2005.09.012  0.68
2005 Jampachaisri K, Valinsky L, Borneman J, Press SJ. Classification of oligonucleotide fingerprints: application for microbial community and gene expression analyses. Bioinformatics (Oxford, England). 21: 3122-30. PMID 15845655 DOI: 10.1093/Bioinformatics/Bti452  0.68
2004 Figueroa A, Borneman J, Jiang T. Clustering binary fingerprint vectors with missing values for DNA array data analysis. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 11: 887-901. PMID 15700408 DOI: 10.1089/Cmb.2004.11.887  0.68
2004 Borneman J, Olatinwo R, Yin B, Becker JO. An experimental approach for identifying microorganisms involved in specified functions: Utilisation for understanding a nematode suppressive soil Australasian Plant Pathology. 33: 151-155. DOI: 10.1071/Ap04007  0.68
2004 Yin B, Scupham AJ, Menge JA, Borneman J. Identifying microorganisms which fill a niche similar to that of the pathogen: A new investigative approach for discovering biological control organisms Plant and Soil. 259: 19-27. DOI: 10.1023/B:Plso.0000020944.45798.56  0.68
2003 Yin B, Valinsky L, Gao X, Becker JO, Borneman J. Identification of Fungal rDNA Associated with Soil Suppressiveness Against Heterodera schachtii Using Oligonucleotide Fingerprinting. Phytopathology. 93: 1006-13. PMID 18943867 DOI: 10.1094/Phyto.2003.93.8.1006  0.68
2003 Figueroa A, Borneman J, Jiang T. Clustering binary fingerprint vectors with missing values for DNA array data analysis. Proceedings / Ieee Computer Society Bioinformatics Conference. Ieee Computer Society Bioinformatics Conference. 2: 38-47. PMID 16452777  0.68
2003 Yin B, Valinsky L, Gao X, Becker JO, Borneman J. Bacterial rRNA genes associated with soil suppressiveness against the plant-parasitic nematode Heterodera schachtii. Applied and Environmental Microbiology. 69: 1573-80. PMID 12620845 DOI: 10.1128/Aem.69.3.1573-1580.2003  0.68
2002 Valinsky L, Della Vedova G, Jiang T, Borneman J. Oligonucleotide fingerprinting of rRNA genes for analysis of fungal community composition. Applied and Environmental Microbiology. 68: 5999-6004. PMID 12450821 DOI: 10.1128/Aem.68.12.5999-6004.2002  0.68
2002 Valinsky L, Della Vedova G, Scupham AJ, Alvey S, Figueroa A, Yin B, Hartin RJ, Chrobak M, Crowley DE, Jiang T, Borneman J. Analysis of bacterial community composition by oligonucleotide fingerprinting of rRNA genes. Applied and Environmental Microbiology. 68: 3243-50. PMID 12089000 DOI: 10.1128/Aem.68.7.3243-3250.2002  0.68
2002 Steddom K, Menge JA, Crowley D, Borneman J. Effect of repetitive applications of the biocontrol bacterium Pseudomonas putida 06909-rif/nal on citrus soil microbial communities Phytopathology. 92: 857-862. DOI: 10.1094/Phyto.2002.92.8.857  0.68
2001 Borneman J, Chrobak M, Vedova GD, Figueroa A, Jiang T. Probe selection algorithms with applications in the analysis of microbial communities Bioinformatics. 17: S39-S48. PMID 11472991 DOI: 10.1093/Bioinformatics/17.Suppl_1.S39  0.68
2001 Yang CH, Crowley DE, Borneman J, Keen NT. Microbial phyllosphere populations are more complex than previously realized Proceedings of the National Academy of Sciences of the United States of America. 98: 3889-3894. PMID 11274410 DOI: 10.1073/Pnas.051633898  0.68
2000 Yin B, Crowley D, Sparovek G, De Melo WJ, Borneman J. Bacterial functional redundancy along a soil reclamation gradient. Applied and Environmental Microbiology. 66: 4361-5. PMID 11010883 DOI: 10.1128/Aem.66.10.4361-4365.2000  0.68
2000 Borneman J, Hartin RJ. PCR primers that amplify fungal rRNA genes from environmental samples Applied and Environmental Microbiology. 66: 4356-4360. PMID 11010882 DOI: 10.1128/Aem.66.10.4356-4360.2000  0.68
1999 Borneman J. Culture-independent identification of microorganisms that respond to specified stimuli Applied and Environmental Microbiology. 65: 3398-3400. PMID 10427025 DOI: 10.1128/Aem.65.8.3398-3400.1999  0.68
1998 Galbraith MP, Feng SF, Borneman J, Triplett EW, de Bruijn FJ, Rossbach S. A functional myo-inositol catabolism pathway is essential for rhizopine utilization by Sinorhizobium meliloti. Microbiology (Reading, England). 144: 2915-24. PMID 9802033 DOI: 10.1099/00221287-144-10-2915  0.68
1997 Borneman J, Triplett EW. Molecular microbial diversity in soils from eastern Amazonia: Evidence for unusual microorganisms and microbial population shifts associated with deforestation Applied and Environmental Microbiology. 63: 2647-2653. PMID 9212415 DOI: 10.1128/Aem.63.7.2647-2653.1997  0.68
1997 Borneman J, Triplett EW. Rapid and direct method for extraction of RNA from soil Soil Biology and Biochemistry. 29: 1621-1624. DOI: 10.1016/S0038-0717(97)00084-9  0.68
1996 Borneman J, Skroch PW, O'Sullivan KM, Palus JA, Rumjanek NG, Jansen JL, Nienhuis J, Triplett EW. Molecular microbial diversity of an agricultural soil in Wisconsin. Applied and Environmental Microbiology. 62: 1935-43. PMID 8787391 DOI: 10.1128/Aem.62.6.1935-1943.1996  0.68
1996 Breil BT, Borneman J, Triplett EW. A newly discovered gene, tfuA, involved in the production of the ribosomally synthesized peptide antibiotic trifolitoxin Journal of Bacteriology. 178: 4150-4156. PMID 8763943 DOI: 10.1128/Jb.178.14.4150-4156.1996  0.68
1996 Palus JA, Borneman J, Ludden PW, Triplett EW. A diazotrophic bacterial endophyte isolated from stems of zea mays l. and Zea luxurians iltis and doebley Plant and Soil. 186: 135-142. DOI: 10.1007/978-94-011-5700-1_19  0.68
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