| Year |
Citation |
Score |
| 2023 |
Martinez-Lomeli J, Deol P, Deans JR, Jiang T, Ruegger P, Borneman J, Sladek FM. Impact of various high fat diets on gene expression and the microbiome across the mouse intestines. Scientific Reports. 13: 22758. PMID 38151490 DOI: 10.1038/s41598-023-49555-7 |
0.691 |
|
| 2023 |
Martinez-Lomeli J, Deol P, Deans JR, Jiang T, Ruegger P, Borneman J, Sladek FM. Impact of Various High Fat Diets on Gene Expression and the Microbiome Across the Mouse Intestines. Research Square. PMID 37886485 DOI: 10.21203/rs.3.rs-3401763/v1 |
0.691 |
|
| 2023 |
Smith Becker J, Ruegger PM, Borneman J, Becker JO. Indigenous populations of a biological control agent in agricultural field soils predicted suppression of a plant pathogen. Phytopathology. PMID 37698487 DOI: 10.1094/PHYTO-07-23-0221-R |
0.664 |
|
| 2023 |
Deol P, Ruegger P, Logan GD, Shawki A, Li J, Mitchell JD, Yu J, Piamthai V, Radi SH, Hasnain S, Borkowski K, Newman JW, McCole DF, Nair MG, Hsiao A, ... Borneman J, et al. Diet high in linoleic acid dysregulates the intestinal endocannabinoid system and increases susceptibility to colitis in Mice. Gut Microbes. 15: 2229945. PMID 37400966 DOI: 10.1080/19490976.2023.2229945 |
0.685 |
|
| 2022 |
Jacobs JP, Goudarzi M, Lagishetty V, Li D, Mak T, Tong M, Ruegger P, Haritunians T, Landers C, Fleshner P, Vasiliauskas E, Ippoliti A, Melmed G, Shih D, Targan S, ... Borneman J, et al. Crohn's disease in endoscopic remission, obesity, and cases of high genetic risk demonstrates overlapping shifts in the colonic mucosal-luminal interface microbiome. Genome Medicine. 14: 91. PMID 35971134 DOI: 10.1186/s13073-022-01099-7 |
0.685 |
|
| 2022 |
Hale AR, Ruegger PM, Rolshausen P, Borneman J, Yang JI. Fungi associated with the potato taste defect in coffee beans from Rwanda. Botanical Studies. 63: 17. PMID 35604510 DOI: 10.1186/s40529-022-00346-9 |
0.751 |
|
| 2022 |
Maier I, Ruegger PM, Deutschmann J, Helbich TH, Pietschmann P, Schiestl RH, Borneman J. Particle Radiation Side-Effects: Intestinal Microbiota Composition Shapes Interferon-γ-Induced Osteo-Immunogenicity. Radiation Research. 197: 184-192. PMID 35130347 DOI: 10.1667/RADE-21-00065.1 |
0.668 |
|
| 2021 |
McNamara MP, Singleton JM, Cadney MD, Ruegger PM, Borneman J, Garland T. Early-life effects of juvenile Western diet and exercise on adult gut microbiome composition in mice. The Journal of Experimental Biology. PMID 33431595 DOI: 10.1242/jeb.239699 |
0.664 |
|
| 2020 |
Ramakrishna C, Mendonca S, Ruegger PM, Kim JH, Borneman J, Cantin EM. Herpes simplex virus infection, Acyclovir and IVIG treatment all independently cause gut dysbiosis. Plos One. 15: e0237189. PMID 32760124 DOI: 10.1371/Journal.Pone.0237189 |
0.702 |
|
| 2020 |
Shawki A, Ramirez R, Spalinger MR, Ruegger PM, Sayoc-Becerra A, Santos AN, Chatterjee P, Canale V, Mitchell JD, Macbeth JC, Gries CM, Tremblay ML, Hsiao A, Borneman J, McCole DF. The autoimmune susceptibility gene, , restricts expansion of a novel mouse adherent-invasive . Gut Microbes. 1-20. PMID 32586195 DOI: 10.1080/19490976.2020.1775538 |
0.75 |
|
| 2020 |
Kim JH, Ruegger PR, Lebig EG, VanSchalkwyk S, Jeske DR, Hsiao A, Borneman J, Martins-Green M. High Levels of Oxidative Stress Create a Microenvironment That Significantly Decreases the Diversity of the Microbiota in Diabetic Chronic Wounds and Promotes Biofilm Formation. Frontiers in Cellular and Infection Microbiology. 10: 259. PMID 32582564 DOI: 10.3389/Fcimb.2020.00259 |
0.311 |
|
| 2020 |
Blacutt A, Ginnan N, Dang T, Bodaghi S, Vidalakis G, Ruegger P, Peacock B, Viravathana P, Campos Vieira F, Drozd C, Jablonska B, Borneman J, McCollum G, Cordoza J, Meloch J, et al. An pipeline to screen and select citrus-associated microbiota with potential anti- Liberibacter asiaticus properties. Applied and Environmental Microbiology. PMID 32086307 DOI: 10.1128/Aem.02883-19 |
0.698 |
|
| 2020 |
Chatterjee P, Spalinger M, Gries C, Shawki A, Borneman J, McCole D. The IBD candidate gene,
PTPN2
, Restricts Epithelial and Macrophage Invasion of a Novel Reporter Adherent‐Invasive
Escherichia coli The Faseb Journal. 34: 1-1. DOI: 10.1096/Fasebj.2020.34.S1.07148 |
0.321 |
|
| 2020 |
Shawki A, Spalinger MR, Santos AN, Canale V, Sayoc-Becerra A, Mitchell J, Macbeth J, Ruegger PM, Borneman J, Hsiao A, McCole DF. A Novel IBD‐Associated Mouse Pathobiont
E. coli
Causes Disease and Prevents Recovery from Colitis The Faseb Journal. 34: 1-1. DOI: 10.1096/Fasebj.2020.34.S1.06961 |
0.683 |
|
| 2020 |
McNamara MP, Cadney MD, Singleton JM, Ruegger PM, Borneman J, Garland T. Long‐lasting Effects of Early‐life Western Diet and Exercise on Adult Gut Microbiome Composition in Mice The Faseb Journal. 34: 1-1. DOI: 10.1096/Fasebj.2020.34.S1.02523 |
0.666 |
|
| 2019 |
Ramakrishna C, Corleto J, Ruegger PM, Logan GD, Peacock BB, Mendonca S, Yamaki S, Adamson T, Ermel R, McKemy D, Borneman J, Cantin EM. Dominant Role of the Gut Microbiota in Chemotherapy Induced Neuropathic Pain. Scientific Reports. 9: 20324. PMID 31889131 DOI: 10.1038/S41598-019-56832-X |
0.681 |
|
| 2019 |
Kim JH, Yang B, Tedesco A, Lebig EGD, Ruegger PM, Xu K, Borneman J, Martins-Green M. High Levels of Oxidative Stress and Skin Microbiome are Critical for Initiation and Development of Chronic Wounds in Diabetic Mice. Scientific Reports. 9: 19318. PMID 31848388 DOI: 10.1038/S41598-019-55644-3 |
0.653 |
|
| 2019 |
Maier I, Liu J, Ruegger PM, Deutschmann J, Patsch JM, Helbich TH, Borneman J, Schiestl RH. Intestinal bacterial indicator phylotypes associate with impaired DNA double-stranded break sensors but augmented skeletal bone micro-structure. Carcinogenesis. PMID 31840161 DOI: 10.1093/Carcin/Bgz204 |
0.698 |
|
| 2019 |
Limon JJ, Tang J, Li D, Wolf AJ, Michelsen KS, Funari V, Gargus M, Nguyen C, Sharma P, Maymi VI, Iliev ID, Skalski JH, Brown J, Landers C, Borneman J, et al. Malassezia Is Associated with Crohn's Disease and Exacerbates Colitis in Mouse Models. Cell Host & Microbe. PMID 30850233 DOI: 10.1016/J.Chom.2019.01.007 |
0.413 |
|
| 2019 |
Shawki A, Alvarez R, Krishnan M, Ruegger P, Li J, Spalinger MR, Nair MG, Borneman J, McCole DF. 694 – The IBD Candidate Gene, Ptpn2, Regulates Segmented Filamentous Bacteria Mediated Th17 Response and Intestinal Barrier Protection Against Adherent-Invasive E. Coli Gastroenterology. 156: S-151-S-152. DOI: 10.1016/S0016-5085(19)37168-9 |
0.694 |
|
| 2018 |
Chang YL, Rossetti M, Vlamakis H, Casero D, Sunga G, Harre N, Miller S, Humphries R, Stappenbeck T, Simpson KW, Sartor RB, Wu G, Lewis J, Bushman F, McGovern DPB, ... ... Borneman J, et al. A screen of Crohn's disease-associated microbial metabolites identifies ascorbate as a novel metabolic inhibitor of activated human T cells. Mucosal Immunology. PMID 29695840 DOI: 10.1038/S41385-018-0022-7 |
0.326 |
|
| 2018 |
Cheng Z, Zhao L, Dhall D, Ruegger PM, Borneman J, Frykman PK. Bacterial Microbiome Dynamics in Post Pull-Through Hirschsprung-Associated Enterocolitis (HAEC): An Experimental Study Employing the Endothelin Receptor B-Null Mouse Model. Frontiers in Surgery. 5: 30. PMID 29682507 DOI: 10.3389/Fsurg.2018.00030 |
0.707 |
|
| 2018 |
Barr T, Sureshchandra S, Ruegger P, Zhang J, Ma W, Borneman J, Grant K, Messaoudi I. Concurrent gut transcriptome and microbiota profiling following chronic ethanol consumption in nonhuman primates. Gut Microbes. 1-44. PMID 29517944 DOI: 10.1080/19490976.2018.1441663 |
0.698 |
|
| 2018 |
Ginnan NA, Dang T, Bodaghi S, Ruegger PM, Peacock BB, McCollum G, England G, Vidalakis G, Roper C, Rolshausen P, Borneman J. Bacterial and Fungal Next Generation Sequencing Datasets and Metadata from Citrus Infected with ‘Candidatus Liberibacter asiaticus’ Phytobiomes Journal. 2: 64-70. DOI: 10.1094/PBIOMES-08-17-0032-A |
0.69 |
|
| 2018 |
Shawki A, Alvarez R, Krishnan M, Ruegger P, Borneman J, McCole DF. Mo1950 - Increased Abundance of a Novel Adherent-Invasive E. Coli in PTPN2 -Deficient Mice Causes Altered Barrier Function and Tight Junction Remodeling Gastroenterology. 154: S-862. DOI: 10.1016/S0016-5085(18)32914-7 |
0.677 |
|
| 2017 |
Deyett E, Roper MC, Ruegger P, Yang J, Borneman J, Rolshausen PE. Microbial Landscape of the Grapevine Endosphere in the Context of Pierce’s Disease Phytobiomes Journal. 1: 138-149. DOI: 10.1094/PBIOMES-08-17-0033-R |
0.764 |
|
| 2017 |
Jacobs J, Tong M, Ruegger P, Li D, Haritunians T, Fleshner P, Vasiliauskas E, Ippoliti A, Melmed G, Shih DQ, Targan SR, Borneman J, McGovern D, Braun J. Crohn's Disease, Obesity, and High Crohn's Disease Genetic Risk are Associated with Parallel Changes in the Microbiome of the Cecal and Sigmoid Mucosal-Luminal Interface Gastroenterology. 152: S111. DOI: 10.1016/S0016-5085(17)30712-6 |
0.68 |
|
| 2017 |
Barr T, Sureshchandra S, Ruegger P, Borneman J, Grant K, Messaoudi I. Chronic ethanol consumption disrupts intestinal microbiota and mucosal gene expression Alcohol. 59: 70. DOI: 10.1016/J.Alcohol.2016.10.015 |
0.68 |
|
| 2016 |
Jacobs JP, Goudarzi M, Singh N, Tong M, McHardy IH, Ruegger P, Asadourian M, Moon BH, Ayson A, Borneman J, McGovern DP, Fornace AJ, Braun J, Dubinsky M. A Disease-Associated Microbial and Metabolomics State in Relatives of Pediatric Inflammatory Bowel Disease Patients. Cellular and Molecular Gastroenterology and Hepatology. 2: 750-766. PMID 28174747 DOI: 10.1016/J.Jcmgh.2016.06.004 |
0.719 |
|
| 2016 |
Jacobs JP, Lin L, Goudarzi M, Ruegger P, McGovern DP, Fornace AJ, Borneman J, Xia L, Braun J. Microbial, metabolomic, and immunologic dynamics in a relapsing genetic mouse model of colitis induced by T-synthase deficiency. Gut Microbes. 0. PMID 27874308 DOI: 10.1080/19490976.2016.1257469 |
0.723 |
|
| 2016 |
Li D, Achkar JP, Haritunians T, Jacobs JP, Hui KY, D'Amato M, Brand S, Radford-Smith G, Halfvarson J, Niess JH, Kugathasan S, Büning C, Schumm LP, Klei L, Ananthakrishnan A, ... ... Borneman J, et al. A pleiotropic missense variant in SLC39A8 is associated with Crohn's disease and human gut microbiome composition. Gastroenterology. PMID 27492617 DOI: 10.1053/J.Gastro.2016.06.051 |
0.353 |
|
| 2016 |
Cheema AK, Maier I, Dowdy T, Wang Y, Singh R, Ruegger PM, Borneman J, Fornace AJ, Schiestl RH. Chemopreventive Metabolites Are Correlated with a Change in Intestinal Microbiota Measured in A-T Mice and Decreased Carcinogenesis. Plos One. 11: e0151190. PMID 27073845 DOI: 10.1371/Journal.Pone.0151190 |
0.716 |
|
| 2016 |
Volkmann ER, Chang YL, Barroso N, Furst DE, Clements PP, Gorn AH, Roth BE, Conklin JL, Getzug T, Borneman J, McGovern DP, Tong M, Jacobs JP, Braun J. Systemic sclerosis is associated with a unique colonic microbial consortium. Arthritis & Rheumatology (Hoboken, N.J.). PMID 26749064 DOI: 10.1002/Art.39572 |
0.33 |
|
| 2016 |
Jacobs J, Lin L, Lagishetty V, Ruegger P, Borneman J, Braun J. Su1880 RORγt-Dependent CD4+ T Cells Garden the Mucosa-Associated Microbiome of the Small Intestine and Colon Gastroenterology. 150: S578. DOI: 10.1016/S0016-5085(16)31979-5 |
0.686 |
|
| 2015 |
Jacobs JP, Tong M, McHardy I, Goudarzi M, Ruegger P, McGovern D, Borneman J, Fornace AJ, Dubinsky M, Braun J. 1010 Disease-Associated Enterotypes and Metabotypes in Families With Pediatric Inflammatory Bowel Disease Gastroenterology. 148: S-190. DOI: 10.1016/S0016-5085(15)30633-8 |
0.652 |
|
| 2014 |
Huang YT, Yang JI, Chrobak M, Borneman J. PRISE2: software for designing sequence-selective PCR primers and probes. Bmc Bioinformatics. 15: 317. PMID 25252611 DOI: 10.1186/1471-2105-15-317 |
0.589 |
|
| 2014 |
Ruegger PM, Clark RT, Weger JR, Braun J, Borneman J. Improved resolution of bacteria by high throughput sequence analysis of the rRNA internal transcribed spacer. Journal of Microbiological Methods. 105: 82-7. PMID 25034229 DOI: 10.1016/J.Mimet.2014.07.001 |
0.69 |
|
| 2014 |
Tong M, McHardy I, Ruegger P, Goudarzi M, Kashyap PC, Haritunians T, Li X, Graeber TG, Schwager E, Huttenhower C, Fornace AJ, Sonnenburg JL, McGovern DP, Borneman J, Braun J. Reprograming of gut microbiome energy metabolism by the FUT2 Crohn's disease risk polymorphism. The Isme Journal. 8: 2193-206. PMID 24781901 DOI: 10.1038/Ismej.2014.64 |
0.713 |
|
| 2014 |
Tanaseichuk O, Borneman J, Jiang T. Phylogeny-based classification of microbial communities. Bioinformatics (Oxford, England). 30: 449-56. PMID 24369151 DOI: 10.1093/Bioinformatics/Btt700 |
0.332 |
|
| 2014 |
Jacobs JP, Tong M, Goudarzi M, McHardy I, Lin L, Ruegger P, Liu Z, Xia L, Fornace AJ, Borneman J, Braun J. Tu1750 Microbial, Metabolomic, and Immunologic Dynamics During Disease Onset, Remission, and Relapse in a Mouse Model of Colitis Involving a Genetically Impaired Mucus Barrier Gastroenterology. 146: S-833. DOI: 10.1016/S0016-5085(14)63026-2 |
0.704 |
|
| 2013 |
McHardy IH, Li X, Tong M, Ruegger P, Jacobs J, Borneman J, Anton P, Braun J. HIV Infection is associated with compositional and functional shifts in the rectal mucosal microbiota. Microbiome. 1: 26. PMID 24451087 DOI: 10.1186/2049-2618-1-26 |
0.661 |
|
| 2013 |
McHardy IH, Goudarzi M, Tong M, Ruegger PM, Schwager E, Weger JR, Graeber TG, Sonnenburg JL, Horvath S, Huttenhower C, McGovern DP, Fornace AJ, Borneman J, Braun J. Integrative analysis of the microbiome and metabolome of the human intestinal mucosal surface reveals exquisite inter-relationships. Microbiome. 1: 17. PMID 24450808 DOI: 10.1186/2049-2618-1-17 |
0.729 |
|
| 2013 |
Tong M, Li X, Wegener Parfrey L, Roth B, Ippoliti A, Wei B, Borneman J, McGovern DP, Frank DN, Li E, Horvath S, Knight R, Braun J. A modular organization of the human intestinal mucosal microbiota and its association with inflammatory bowel disease. Plos One. 8: e80702. PMID 24260458 DOI: 10.1371/Journal.Pone.0080702 |
0.446 |
|
| 2013 |
Yamamoto ML, Maier I, Dang AT, Berry D, Liu J, Ruegger PM, Yang JI, Soto PA, Presley LL, Reliene R, Westbrook AM, Wei B, Loy A, Chang C, Braun J, ... Borneman J, et al. Intestinal bacteria modify lymphoma incidence and latency by affecting systemic inflammatory state, oxidative stress, and leukocyte genotoxicity. Cancer Research. 73: 4222-32. PMID 23860718 DOI: 10.1158/0008-5472.Can-13-0022 |
0.782 |
|
| 2013 |
McHardy I, Goudarzi M, Tong M, Ruegger P, Horvath S, Sonnenburg J, Graeber T, Huttenhower C, Borneman J, McGovern DP, Fornace A, Braun J. Tu1983 Comprehensive Inter-Omic Analysis Reveals Exquisite Metabolite-Driven Microbial Relationships Gastroenterology. 144: S-896-S-897. DOI: 10.1016/S0016-5085(13)63339-9 |
0.692 |
|
| 2013 |
Tong M, McHardy I, Ruegger P, Schwager E, Fleshner P, Li X, McGovern DP, Huttenhower C, Borneman J, Braun J. Sa1800 The Crohn's Disease Risk Locus FUT2 Selects for Microbial Functional Specialization in Normal Individuals That Predisposes to IBD Susceptibility Gastroenterology. 144: S-309. DOI: 10.1016/S0016-5085(13)61111-7 |
0.7 |
|
| 2012 |
Yang JI, Loffredo A, Borneman J, Becker JO. Biocontrol Efficacy Among Strains of Pochonia chlamydosporia Obtained from a Root-Knot Nematode Suppressive Soil. Journal of Nematology. 44: 67-71. PMID 23483846 |
0.546 |
|
| 2012 |
Yang JI, Benecke S, Jeske DR, Rocha FS, Smith Becker J, Timper P, Ole Becker J, Borneman J. Population Dynamics of Dactylella oviparasitica and Heterodera schachtii: Toward a Decision Model for Sugar Beet Planting. Journal of Nematology. 44: 237-44. PMID 23481664 |
0.539 |
|
| 2012 |
Yang JI, Ruegger PM, McKenry MV, Becker JO, Borneman J. Correlations between root-associated microorganisms and peach replant disease symptoms in a California soil. Plos One. 7: e46420. PMID 23071565 DOI: 10.1371/Journal.Pone.0046420 |
0.77 |
|
| 2012 |
Godwin S, Bent E, Borneman J, Pereg L. The role of coral-associated bacterial communities in Australian Subtropical White Syndrome of Turbinaria mesenterina. Plos One. 7: e44243. PMID 22970188 DOI: 10.1371/Journal.Pone.0044243 |
0.364 |
|
| 2012 |
Ruegger PM, Bent E, Li W, Jeske DR, Cui X, Braun J, Jiang T, Borneman J. Improving oligonucleotide fingerprinting of rRNA genes by implementation of polony microarray technology. Journal of Microbiological Methods. 90: 235-40. PMID 22640891 DOI: 10.1016/J.Mimet.2012.05.013 |
0.695 |
|
| 2012 |
Presley LL, Ye J, Li X, Leblanc J, Zhang Z, Ruegger PM, Allard J, McGovern D, Ippoliti A, Roth B, Cui X, Jeske DR, Elashoff D, Goodglick L, Braun J, ... Borneman J, et al. Host-microbe relationships in inflammatory bowel disease detected by bacterial and metaproteomic analysis of the mucosal-luminal interface. Inflammatory Bowel Diseases. 18: 409-17. PMID 21698720 DOI: 10.1002/Ibd.21793 |
0.763 |
|
| 2011 |
Li X, LeBlanc J, Truong A, Vuthoori R, Chen SS, Lustgarten JL, Roth B, Allard J, Ippoliti A, Presley LL, Borneman J, Bigbee WL, Gopalakrishnan V, Graeber TG, Elashoff D, et al. A metaproteomic approach to study human-microbial ecosystems at the mucosal luminal interface. Plos One. 6: e26542. PMID 22132074 DOI: 10.1371/Journal.Pone.0026542 |
0.789 |
|
| 2011 |
Ruegger PM, Della Vedova G, Jiang T, Borneman J. Improving probe set selection for microbial community analysis by leveraging taxonomic information of training sequences. Bmc Bioinformatics. 12: 394. PMID 21985453 DOI: 10.1186/1471-2105-12-394 |
0.683 |
|
| 2010 |
Yu H, Jeske DR, Ruegger P, Borneman J. Neutral Zone Classifiers Using a Decision-Theoretic Approach With Application to DNA Array Analyses. Journal of Agricultural, Biological, and Environmental Statistics. 15: 474-490. PMID 21769245 DOI: 10.1007/S13253-010-0034-6 |
0.658 |
|
| 2010 |
McGuire KL, Bent E, Borneman J, Majumder A, Allison SD, Tresederi KK. Functional diversity in resource use by fungi. Ecology. 91: 2324-32. PMID 20836454 DOI: 10.1890/09-0654.1 |
0.339 |
|
| 2010 |
Wei B, Wingender G, Fujiwara D, Chen DY, McPherson M, Brewer S, Borneman J, Kronenberg M, Braun J. Commensal microbiota and CD8+ T cells shape the formation of invariant NKT cells. Journal of Immunology (Baltimore, Md. : 1950). 184: 1218-26. PMID 20048124 DOI: 10.4049/Jimmunol.0902620 |
0.355 |
|
| 2010 |
Presley LL, Wei B, Braun J, Borneman J. Bacteria associated with immunoregulatory cells in mice. Applied and Environmental Microbiology. 76: 936-41. PMID 20008175 DOI: 10.1128/Aem.01561-09 |
0.788 |
|
| 2010 |
Li W, Ruegger PM, Borneman J, Jiang T. Polony identification using the EM algorithm based on a Gaussian mixture model 10th Ieee International Conference On Bioinformatics and Bioengineering 2010, Bibe 2010. 220-225. DOI: 10.1109/BIBE.2010.43 |
0.626 |
|
| 2010 |
Li X, LeBlanc JF, Elashoff D, Borneman J, Goodglick L, Braun J. 65 Detecting Disease-Related Biological Neighborhoods by Human Mucosal Interface Metaproteome Analysis Gastroenterology. 138: S-13. DOI: 10.1016/S0016-5085(10)60060-1 |
0.315 |
|
| 2010 |
Li X, LeBlanc J, Elashoff D, Borneman J, Goodglick L, Braun J. Detecting Disease-related Biological Neighborhoods by Human Mucosal Interface Metaproteome Analysis Clinical Immunology. 135: S75. DOI: 10.1016/J.Clim.2010.03.226 |
0.315 |
|
| 2009 |
Bent E, Loffredo A, Yang JI, McKenry MV, Becker JO, Borneman J. Investigations into peach seedling stunting caused by a replant soil. Fems Microbiology Ecology. 68: 192-200. PMID 19573200 DOI: 10.1111/J.1574-6941.2009.00668.X |
0.629 |
|
| 2009 |
Li X, LeBlanc J, Elashoff D, Presley L, Borneman J, Goodglick L, Braun J. S.17. Identifying Diagnostic Markers and Studying Etiologic Factors of Inflammatory Bowel Diseases Using a High-throughput Proteomic Approach Clinical Immunology. 131: S137-S138. DOI: 10.1016/J.Clim.2009.03.404 |
0.779 |
|
| 2008 |
Gao X, Yin B, Borneman J, Becker JO. Assessment of Parasitic Activity of Fusarium Strains Obtained from a Heterodera schachtii-Suppressive Soil. Journal of Nematology. 40: 1-6. PMID 19259511 |
0.689 |
|
| 2008 |
Wei B, Su TT, Dalwadi H, Stephan RP, Fujiwara D, Huang TT, Brewer S, Chen L, Arditi M, Borneman J, Rawlings DJ, Braun J. Resident enteric microbiota and CD8+ T cells shape the abundance of marginal zone B cells. European Journal of Immunology. 38: 3411-25. PMID 19009526 DOI: 10.1002/Eji.200838432 |
0.323 |
|
| 2008 |
Fujiwara D, Wei B, Presley LL, Brewer S, McPherson M, Lewinski MA, Borneman J, Braun J. Systemic control of plasmacytoid dendritic cells by CD8+ T cells and commensal microbiota. Journal of Immunology (Baltimore, Md. : 1950). 180: 5843-52. PMID 18424703 DOI: 10.4049/Jimmunol.180.9.5843 |
0.796 |
|
| 2008 |
Ye J, Lee JW, Presley LL, Bent E, Wei B, Braun J, Schiller NL, Straus DS, Borneman J. Bacteria and bacterial rRNA genes associated with the development of colitis in IL-10(-/-) mice. Inflammatory Bowel Diseases. 14: 1041-50. PMID 18381614 DOI: 10.1002/Ibd.20442 |
0.791 |
|
| 2008 |
Bruns TD, Blackwell M, Edwards I, Taylor AFS, Horton T, Zhang N, Kõljalg U, May G, Kuyper TW, Bever JD, Gilbert G, Taylor JW, DeSantis TZ, Pringle A, Borneman J, et al. Preserving accuracy in GenBank Science. 319: 1616. PMID 18356505 DOI: 10.1126/Science.319.5870.1616A |
0.497 |
|
| 2008 |
Fu Q, Ruegger P, Bent E, Chrobak M, Borneman J. PRISE (PRImer SElector): software for designing sequence-selective PCR primers. Journal of Microbiological Methods. 72: 263-7. PMID 18221808 DOI: 10.1016/J.Mimet.2007.12.004 |
0.674 |
|
| 2008 |
Fujiwara D, Wei B, Presley LL, Brewer SN, McPherson M, Borneman J, Braun J. 303 Systemic Control of Plasmacytoid Dendritic Cells By CD8+ T Cells and Commensal Microbiota Gastroenterology. 134. DOI: 10.1016/S0016-5085(08)60206-1 |
0.758 |
|
| 2007 |
Borneman J, Becker JO. Identifying microorganisms involved in specific pathogen suppression in soil. Annual Review of Phytopathology. 45: 153-72. PMID 17506652 DOI: 10.1146/Annurev.Phyto.45.062806.094354 |
0.33 |
|
| 2006 |
Olatinwo R, Yin B, Becker JO, Borneman J. Suppression of the Plant-Parasitic Nematode Heterodera schachtii by the Fungus Dactylella oviparasitica. Phytopathology. 96: 111-4. PMID 18944211 DOI: 10.1094/Phyto-96-0111 |
0.714 |
|
| 2006 |
Bent E, Yin B, Figueroa A, Ye J, Fu Q, Liu Z, McDonald V, Jeske D, Jiang T, Borneman J. Development of a 9600-clone procedure for oligonucleotide fingerprinting of rRNA genes: utilization to identify soil bacterial rRNA genes that correlate in abundance with the development of avocado root rot. Journal of Microbiological Methods. 67: 171-80. PMID 16712989 DOI: 10.1016/J.Mimet.2006.03.023 |
0.781 |
|
| 2006 |
Scupham AJ, Presley LL, Wei B, Bent E, Griffith N, McPherson M, Zhu F, Oluwadara O, Rao N, Braun J, Borneman J. Abundant and diverse fungal microbiota in the murine intestine. Applied and Environmental Microbiology. 72: 793-801. PMID 16391120 DOI: 10.1128/Aem.72.1.793-801.2006 |
0.818 |
|
| 2005 |
Fu Q, Borneman J, Ye J, Chrobak M. Improved probe selection for DNA arrays using nonparametric kernel density estimation. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 1: 902-5. PMID 17282330 DOI: 10.1109/IEMBS.2005.1616561 |
0.758 |
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| 2005 |
Huang T, Wei B, Velazquez P, Borneman J, Braun J. Commensal microbiota alter the abundance and TCR responsiveness of splenic naïve CD4+ T lymphocytes. Clinical Immunology (Orlando, Fla.). 117: 221-30. PMID 16290233 DOI: 10.1016/J.Clim.2005.09.012 |
0.313 |
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| 2004 |
Borneman J, Olatinwo R, Yin B, Becker JO. An experimental approach for identifying microorganisms involved in specified functions: Utilisation for understanding a nematode suppressive soil Australasian Plant Pathology. 33: 151-155. DOI: 10.1071/Ap04007 |
0.739 |
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| 2004 |
Yin B, Scupham AJ, Menge JA, Borneman J. Identifying microorganisms which fill a niche similar to that of the pathogen: A new investigative approach for discovering biological control organisms Plant and Soil. 259: 19-27. DOI: 10.1023/B:Plso.0000020944.45798.56 |
0.739 |
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| 2003 |
Yin B, Valinsky L, Gao X, Becker JO, Borneman J. Identification of Fungal rDNA Associated with Soil Suppressiveness Against Heterodera schachtii Using Oligonucleotide Fingerprinting. Phytopathology. 93: 1006-13. PMID 18943867 DOI: 10.1094/Phyto.2003.93.8.1006 |
0.721 |
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| 2003 |
Yin B, Valinsky L, Gao X, Becker JO, Borneman J. Bacterial rRNA genes associated with soil suppressiveness against the plant-parasitic nematode Heterodera schachtii. Applied and Environmental Microbiology. 69: 1573-80. PMID 12620845 DOI: 10.1128/Aem.69.3.1573-1580.2003 |
0.736 |
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| 2002 |
Valinsky L, Della Vedova G, Jiang T, Borneman J. Oligonucleotide fingerprinting of rRNA genes for analysis of fungal community composition. Applied and Environmental Microbiology. 68: 5999-6004. PMID 12450821 DOI: 10.1128/Aem.68.12.5999-6004.2002 |
0.339 |
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| 2002 |
Valinsky L, Della Vedova G, Scupham AJ, Alvey S, Figueroa A, Yin B, Hartin RJ, Chrobak M, Crowley DE, Jiang T, Borneman J. Analysis of bacterial community composition by oligonucleotide fingerprinting of rRNA genes. Applied and Environmental Microbiology. 68: 3243-50. PMID 12089000 DOI: 10.1128/Aem.68.7.3243-3250.2002 |
0.743 |
|
| 2002 |
Steddom K, Menge JA, Crowley D, Borneman J. Effect of repetitive applications of the biocontrol bacterium Pseudomonas putida 06909-rif/nal on citrus soil microbial communities Phytopathology. 92: 857-862. DOI: 10.1094/Phyto.2002.92.8.857 |
0.333 |
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| 2001 |
Borneman J, Chrobak M, Vedova GD, Figueroa A, Jiang T. Probe selection algorithms with applications in the analysis of microbial communities Bioinformatics. 17: S39-S48. PMID 11472991 DOI: 10.1093/Bioinformatics/17.Suppl_1.S39 |
0.31 |
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| 2001 |
Yang CH, Crowley DE, Borneman J, Keen NT. Microbial phyllosphere populations are more complex than previously realized Proceedings of the National Academy of Sciences of the United States of America. 98: 3889-3894. PMID 11274410 DOI: 10.1073/Pnas.051633898 |
0.341 |
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| 2000 |
Yin B, Crowley D, Sparovek G, De Melo WJ, Borneman J. Bacterial functional redundancy along a soil reclamation gradient. Applied and Environmental Microbiology. 66: 4361-5. PMID 11010883 DOI: 10.1128/Aem.66.10.4361-4365.2000 |
0.72 |
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| 2000 |
Borneman J, Hartin RJ. PCR primers that amplify fungal rRNA genes from environmental samples Applied and Environmental Microbiology. 66: 4356-4360. PMID 11010882 DOI: 10.1128/Aem.66.10.4356-4360.2000 |
0.387 |
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