Eugene L. Madsen - Publications

Cornell University, Ithaca, NY, United States 
Microbiology Biology

43 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Wilhelm RC, Hanson BT, Chandra S, Madsen E. Community dynamics and functional characteristics of naphthalene-degrading populations in contaminated surface sediments and hypoxic/anoxic groundwater. Environmental Microbiology. PMID 30051558 DOI: 10.1111/1462-2920.14309  0.8
2016 Posman KM, DeRito CM, Madsen EL. Benzene Degradation by Variovorax sp within a Coal-tar Contaminated Groundwater Microbial Community. Applied and Environmental Microbiology. PMID 27913419 DOI: 10.1128/AEM.02658-16  0.68
2015 Lee HJ, Jeong SE, Kim PJ, Madsen EL, Jeon CO. High resolution depth distribution of Bacteria, Archaea, methanotrophs, and methanogens in the bulk and rhizosphere soils of a flooded rice paddy. Frontiers in Microbiology. 6: 639. PMID 26161079 DOI: 10.3389/fmicb.2015.00639  1
2015 Hanson BT, Madsen EL. In situ expression of nitrite-dependent anaerobic methane oxidation proteins by Candidatus Methylomirabilis oxyfera co-occurring with expressed anammox proteins in a contaminated aquifer. Environmental Microbiology Reports. 7: 252-64. PMID 25403415 DOI: 10.1111/1758-2229.12239  1
2014 Werner JJ, Garcia ML, Perkins SD, Yarasheski KE, Smith SR, Muegge BD, Stadermann FJ, DeRito CM, Floss C, Madsen EL, Gordon JI, Angenent LT. Microbial community dynamics and stability during an ammonia-induced shift to syntrophic acetate oxidation. Applied and Environmental Microbiology. 80: 3375-83. PMID 24657858 DOI: 10.1128/AEM.00166-14  1
2014 Hanson BT, Hewson I, Madsen EL. Metaproteomic survey of six aquatic habitats: discovering the identities of microbial populations active in biogeochemical cycling. Microbial Ecology. 67: 520-39. PMID 24425229 DOI: 10.1007/s00248-013-0346-5  0.44
2013 Jeon CO, Madsen EL. In situ microbial metabolism of aromatic-hydrocarbon environmental pollutants. Current Opinion in Biotechnology. 24: 474-81. PMID 22999827 DOI: 10.1016/j.copbio.2012.09.001  1
2011 Madsen EL. Microorganisms and their roles in fundamental biogeochemical cycles. Current Opinion in Biotechnology. 22: 456-64. PMID 21333523 DOI: 10.1016/j.copbio.2011.01.008  1
2010 Liou JS, Szostek B, DeRito CM, Madsen EL. Investigating the biodegradability of perfluorooctanoic acid. Chemosphere. 80: 176-83. PMID 20363490 DOI: 10.1016/j.chemosphere.2010.03.009  0.68
2010 Yagi JM, Suflita JM, Gieg LM, DeRito CM, Jeon CO, Madsen EL. Subsurface cycling of nitrogen and anaerobic aromatic hydrocarbon biodegradation revealed by nucleic Acid and metabolic biomarkers. Applied and Environmental Microbiology. 76: 3124-34. PMID 20348302 DOI: 10.1128/AEM.00172-10  1
2010 Yagi JM, Neuhauser EF, Ripp JA, Mauro DM, Madsen EL. Subsurface ecosystem resilience: long-term attenuation of subsurface contaminants supports a dynamic microbial community. The Isme Journal. 4: 131-43. PMID 19776766 DOI: 10.1038/ismej.2009.101  1
2009 Yagi JM, Madsen EL. Diversity, abundance, and consistency of microbial oxygenase expression and biodegradation in a shallow contaminated aquifer. Applied and Environmental Microbiology. 75: 6478-87. PMID 19700556 DOI: 10.1128/AEM.01091-09  1
2009 Yagi JM, Sims D, Brettin T, Bruce D, Madsen EL. The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tar-contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer. Environmental Microbiology. 11: 2253-70. PMID 19453698 DOI: 10.1111/j.1462-2920.2009.01947.x  1
2009 Yeom J, Jeon CO, Madsen EL, Park W. In vitro and in vivo interactions of ferredoxin-NADP+ reductases in Pseudomonas putida. Journal of Biochemistry. 145: 481-91. PMID 19122206 DOI: 10.1093/jb/mvn185  1
2009 Yeom J, Jeon CO, Madsen EL, Park W. Ferredoxin-NADP+ reductase from Pseudomonas putida functions as a ferric reductase. Journal of Bacteriology. 191: 1472-9. PMID 19114475 DOI: 10.1128/JB.01473-08  1
2009 DeRito CM, Madsen EL. Stable isotope probing reveals Trichosporon yeast to be active in situ in soil phenol metabolism. The Isme Journal. 3: 477-85. PMID 19092862 DOI: 10.1038/ismej.2008.122  0.68
2009 Pumphrey GM, Hanson BT, Chandra S, Madsen EL. Dynamic secondary ion mass spectrometry imaging of microbial populations utilizing C-labelled substrates in pure culture and in soil. Environmental Microbiology. 11: 220-9. PMID 18811644 DOI: 10.1111/j.1462-2920.2008.01757.x  1
2008 Pumphrey GM, Madsen EL. Field-based stable isotope probing reveals the identities of benzoic acid-metabolizing microorganisms and their in situ growth in agricultural soil. Applied and Environmental Microbiology. 74: 4111-8. PMID 18469130 DOI: 10.1128/AEM.00464-08  1
2008 Liou JS, Derito CM, Madsen EL. Field-based and laboratory stable isotope probing surveys of the identities of both aerobic and anaerobic benzene-metabolizing microorganisms in freshwater sediment. Environmental Microbiology. 10: 1964-77. PMID 18430012 DOI: 10.1111/j.1462-2920.2008.01612.x  0.68
2008 Chandra S, Pumphrey G, Abraham JM, Madsen EL. Dynamic SIMS ion microscopy imaging of individual bacterial cells for studies of isotopically labeled molecules Applied Surface Science. 255: 847-851. DOI: 10.1016/j.apsusc.2008.05.129  1
2007 Pumphrey GM, Madsen EL. Naphthalene metabolism and growth inhibition by naphthalene in Polaromonas naphthalenivorans strain CJ2. Microbiology (Reading, England). 153: 3730-8. PMID 17975081 DOI: 10.1099/mic.0.2007/010728-0  1
2006 Madsen EL. The use of stable isotope probing techniques in bioreactor and field studies on bioremediation. Current Opinion in Biotechnology. 17: 92-7. PMID 16378724 DOI: 10.1016/j.copbio.2005.12.004  1
2006 Lee Y, Peña-Llopis S, Kang YS, Shin HD, Demple B, Madsen EL, Jeon CO, Park W. Expression analysis of the fpr (ferredoxin-NADP+ reductase) gene in Pseudomonas putida KT2440. Biochemical and Biophysical Research Communications. 339: 1246-54. PMID 16360643 DOI: 10.1016/j.bbrc.2005.11.135  1
2005 DeRito CM, Pumphrey GM, Madsen EL. Use of field-based stable isotope probing to identify adapted populations and track carbon flow through a phenol-degrading soil microbial community. Applied and Environmental Microbiology. 71: 7858-65. PMID 16332760 DOI: 10.1128/AEM.71.12.7858-7865.2005  1
2005 Madsen EL. Identifying microorganisms responsible for ecologically significant biogeochemical processes. Nature Reviews. Microbiology. 3: 439-46. PMID 15864265 DOI: 10.1038/nrmicro1151  1
2004 Weiss JM, McKay AJ, Derito C, Watanabe C, Thorn KA, Madsen EL. Development and application of pyrolysis gas chromatography/mass spectrometry for the analysis of bound trinitrotoluene residues in soil. Environmental Science & Technology. 38: 2167-74. PMID 15112821 DOI: 10.1021/es034911v  1
2004 Jeon CO, Park W, Ghiorse WC, Madsen EL. Polaromonas naphthalenivorans sp. nov., a naphthalene-degrading bacterium from naphthalene-contaminated sediment. International Journal of Systematic and Evolutionary Microbiology. 54: 93-7. PMID 14742464 DOI: 10.1099/ijs.0.02636-0  1
2004 Miller DN, Yavitt JB, Madsen EL, Ghiorse WC. Methanotrophic activity, abundance, and diversity in forested swamp pools: Spatiotemporal dynamics and influences on methane fluxes Geomicrobiology Journal. 21: 257-271. DOI: 10.1080/01490450490438766  1
2003 Park W, Jeon CO, Hohnstock-Ashe AM, Winans SC, Zylstra GJ, Madsen EL. Identification and characterization of the conjugal transfer region of the pCg1 plasmid from naphthalene-degrading Pseudomonas putida Cg1. Applied and Environmental Microbiology. 69: 3263-71. PMID 12788725 DOI: 10.1128/AEM.69.6.3263-3271.2003  1
2003 Padmanabhan P, Padmanabhan S, DeRito C, Gray A, Gannon D, Snape JR, Tsai CS, Park W, Jeon C, Madsen EL. Respiration of 13C-labeled substrates added to soil in the field and subsequent 16S rRNA gene analysis of 13C-labeled soil DNA. Applied and Environmental Microbiology. 69: 1614-22. PMID 12620850 DOI: 10.1128/AEM.69.3.1614-1622.2003  1
2002 Park W, Padmanabhan P, Padmanabhan S, Zylstra GJ, Madsen EL. nahR, encoding a LysR-type transcriptional regulator, is highly conserved among naphthalene-degrading bacteria isolated from a coal tar waste-contaminated site and in extracted community DNA. Microbiology (Reading, England). 148: 2319-29. PMID 12177326 DOI: 10.1099/00221287-148-8-2319  1
2002 Bakermans C, Hohnstock-Ashe AM, Padmanabhan S, Padmanabhan P, Madsen EL. Geochemical and physiological evidence for mixed aerobic and anaerobic field biodegradation of coal tar waste by subsurface microbial communities Microbial Ecology. 44: 107-117. PMID 12087424 DOI: 10.1007/s00248-002-3011-y  1
1999 Kalogeraki VS, Zhu J, Eberhard A, Madsen EL, Winans SC. The phenolic vir gene inducer ferulic acid is O-demethylated by the VirH2 protein of an Agrobacterium tumefaciens Ti plasmid Molecular Microbiology. 34: 512-522. PMID 10564493 DOI: 10.1046/j.1365-2958.1999.01617.x  1
1999 Miller DN, Bryant JE, Madsen EL, Ghiorse WC. Evaluation and optimization of DNA extraction and purification procedures for soil and sediment samples. Applied and Environmental Microbiology. 65: 4715-24. PMID 10543776 DOI: 10.1128/aem.65.11.4715-4724.1999  1
1998 Madsen EL. Epistemology of environmental microbiology Environmental Science and Technology. 32: 429-439. DOI: 10.1021/es970551y  1
1997 Herrick JB, Stuart-Keil KG, Ghiorse WC, Madsen EL. Natural horizontal transfer of a naphthalene dioxygenase gene between bacteria native to a coal tar-contaminated field site Applied and Environmental Microbiology. 63: 2330-2337. PMID 9172352 DOI: 10.1128/aem.63.6.2330-2337.1997  1
1995 Madsen EL. Impacts of Agricultural Practices on Subsurface Microbial Ecology Advances in Agronomy. 54: 1-67. DOI: 10.1016/S0065-2113(08)60897-4  1
1995 Madsen EL, Bilotta-Best SE, Ghiorse WC. Development of a rapid 14C-based field method for assessing potential biodegradation of organic compounds in soil and sediment samples Journal of Microbiological Methods. 21: 317-327. DOI: 10.1016/0167-7012(94)00058-F  1
1994 More MI, Herrick JB, Silva MC, Ghiorse WC, Madsen EL. Quantitative cell lysis of indigenous microorganisms and rapid extraction of microbial DNA from sediment Applied and Environmental Microbiology. 60: 1572-1580. PMID 8017936 DOI: 10.1128/aem.60.5.1572-1580.1994  1
1993 Herrick JB, Madsen EL, Batt CA, Ghiorse WC. Polymerase chain reaction amplification of naphthalene-catabolic and 16S rRNA gene sequences from indigenous sediment bacteria Applied and Environmental Microbiology. 59: 687-694. PMID 7683182  1
1992 Madsen EL, Winding A, Malachowsky K, Thomas CT, Ghiorse WC. Contrasts between subsurface microbial communities and their metabolic adaptation to polycyclic aromatic hydrocarbons at a forested and an urban coal-tar disposal site Microbial Ecology. 24: 199-213. DOI: 10.1007/BF00174455  1
1991 Madsen EL, Sinclair JL, Ghiorse WC. In situ biodegradation: Microbiological patterns in a contaminated aquifer Science. 252: 830-833. PMID 2028258 DOI: 10.1126/science.2028258  1
1988 Madsen EL, Francis AJ, Bollag JM. Environmental factors affecting indole metabolism under anaerobic conditions. Applied and Environmental Microbiology. 54: 74-8. PMID 3345080  1
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