Eugene L. Madsen - Publications

Cornell University, Ithaca, NY, United States 
Microbiology Biology

25 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Posman KM, DeRito CM, Madsen EL. Benzene Degradation by Variovorax sp within a Coal-tar Contaminated Groundwater Microbial Community. Applied and Environmental Microbiology. PMID 27913419 DOI: 10.1128/AEM.02658-16  0.68
2015 Lee HJ, Jeong SE, Kim PJ, Madsen EL, Jeon CO. High resolution depth distribution of Bacteria, Archaea, methanotrophs, and methanogens in the bulk and rhizosphere soils of a flooded rice paddy. Frontiers in Microbiology. 6: 639. PMID 26161079 DOI: 10.3389/fmicb.2015.00639  1
2015 Hanson BT, Madsen EL. In situ expression of nitrite-dependent anaerobic methane oxidation proteins by Candidatus Methylomirabilis oxyfera co-occurring with expressed anammox proteins in a contaminated aquifer. Environmental Microbiology Reports. 7: 252-64. PMID 25403415 DOI: 10.1111/1758-2229.12239  1
2014 Werner JJ, Garcia ML, Perkins SD, Yarasheski KE, Smith SR, Muegge BD, Stadermann FJ, DeRito CM, Floss C, Madsen EL, Gordon JI, Angenent LT. Microbial community dynamics and stability during an ammonia-induced shift to syntrophic acetate oxidation. Applied and Environmental Microbiology. 80: 3375-83. PMID 24657858 DOI: 10.1128/AEM.00166-14  1
2014 Hanson BT, Hewson I, Madsen EL. Metaproteomic survey of six aquatic habitats: discovering the identities of microbial populations active in biogeochemical cycling. Microbial Ecology. 67: 520-39. PMID 24425229 DOI: 10.1007/s00248-013-0346-5  0.44
2013 Jeon CO, Madsen EL. In situ microbial metabolism of aromatic-hydrocarbon environmental pollutants. Current Opinion in Biotechnology. 24: 474-81. PMID 22999827 DOI: 10.1016/j.copbio.2012.09.001  1
2011 Madsen EL. Microorganisms and their roles in fundamental biogeochemical cycles. Current Opinion in Biotechnology. 22: 456-64. PMID 21333523 DOI: 10.1016/j.copbio.2011.01.008  1
2010 Yagi JM, Suflita JM, Gieg LM, DeRito CM, Jeon CO, Madsen EL. Subsurface cycling of nitrogen and anaerobic aromatic hydrocarbon biodegradation revealed by nucleic Acid and metabolic biomarkers. Applied and Environmental Microbiology. 76: 3124-34. PMID 20348302 DOI: 10.1128/AEM.00172-10  1
2010 Yagi JM, Neuhauser EF, Ripp JA, Mauro DM, Madsen EL. Subsurface ecosystem resilience: long-term attenuation of subsurface contaminants supports a dynamic microbial community. The Isme Journal. 4: 131-43. PMID 19776766 DOI: 10.1038/ismej.2009.101  1
2009 Yagi JM, Madsen EL. Diversity, abundance, and consistency of microbial oxygenase expression and biodegradation in a shallow contaminated aquifer. Applied and Environmental Microbiology. 75: 6478-87. PMID 19700556 DOI: 10.1128/AEM.01091-09  1
2009 Yagi JM, Sims D, Brettin T, Bruce D, Madsen EL. The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tar-contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer. Environmental Microbiology. 11: 2253-70. PMID 19453698 DOI: 10.1111/j.1462-2920.2009.01947.x  1
2009 Yeom J, Jeon CO, Madsen EL, Park W. In vitro and in vivo interactions of ferredoxin-NADP+ reductases in Pseudomonas putida. Journal of Biochemistry. 145: 481-91. PMID 19122206 DOI: 10.1093/jb/mvn185  1
2009 Yeom J, Jeon CO, Madsen EL, Park W. Ferredoxin-NADP+ reductase from Pseudomonas putida functions as a ferric reductase. Journal of Bacteriology. 191: 1472-9. PMID 19114475 DOI: 10.1128/JB.01473-08  1
2009 DeRito CM, Madsen EL. Stable isotope probing reveals Trichosporon yeast to be active in situ in soil phenol metabolism. The Isme Journal. 3: 477-85. PMID 19092862 DOI: 10.1038/ismej.2008.122  0.68
2009 Pumphrey GM, Hanson BT, Chandra S, Madsen EL. Dynamic secondary ion mass spectrometry imaging of microbial populations utilizing C-labelled substrates in pure culture and in soil. Environmental Microbiology. 11: 220-9. PMID 18811644 DOI: 10.1111/j.1462-2920.2008.01757.x  1
2008 Pumphrey GM, Madsen EL. Field-based stable isotope probing reveals the identities of benzoic acid-metabolizing microorganisms and their in situ growth in agricultural soil. Applied and Environmental Microbiology. 74: 4111-8. PMID 18469130 DOI: 10.1128/AEM.00464-08  1
2007 Pumphrey GM, Madsen EL. Naphthalene metabolism and growth inhibition by naphthalene in Polaromonas naphthalenivorans strain CJ2. Microbiology (Reading, England). 153: 3730-8. PMID 17975081 DOI: 10.1099/mic.0.2007/010728-0  1
2006 Madsen EL. The use of stable isotope probing techniques in bioreactor and field studies on bioremediation. Current Opinion in Biotechnology. 17: 92-7. PMID 16378724 DOI: 10.1016/j.copbio.2005.12.004  1
2006 Lee Y, Peña-Llopis S, Kang YS, Shin HD, Demple B, Madsen EL, Jeon CO, Park W. Expression analysis of the fpr (ferredoxin-NADP+ reductase) gene in Pseudomonas putida KT2440. Biochemical and Biophysical Research Communications. 339: 1246-54. PMID 16360643 DOI: 10.1016/j.bbrc.2005.11.135  1
2005 DeRito CM, Pumphrey GM, Madsen EL. Use of field-based stable isotope probing to identify adapted populations and track carbon flow through a phenol-degrading soil microbial community. Applied and Environmental Microbiology. 71: 7858-65. PMID 16332760 DOI: 10.1128/AEM.71.12.7858-7865.2005  1
2005 Madsen EL. Identifying microorganisms responsible for ecologically significant biogeochemical processes. Nature Reviews. Microbiology. 3: 439-46. PMID 15864265 DOI: 10.1038/nrmicro1151  1
2004 Weiss JM, McKay AJ, Derito C, Watanabe C, Thorn KA, Madsen EL. Development and application of pyrolysis gas chromatography/mass spectrometry for the analysis of bound trinitrotoluene residues in soil. Environmental Science & Technology. 38: 2167-74. PMID 15112821 DOI: 10.1021/es034911v  1
2004 Jeon CO, Park W, Ghiorse WC, Madsen EL. Polaromonas naphthalenivorans sp. nov., a naphthalene-degrading bacterium from naphthalene-contaminated sediment. International Journal of Systematic and Evolutionary Microbiology. 54: 93-7. PMID 14742464 DOI: 10.1099/ijs.0.02636-0  1
2003 Park W, Jeon CO, Hohnstock-Ashe AM, Winans SC, Zylstra GJ, Madsen EL. Identification and characterization of the conjugal transfer region of the pCg1 plasmid from naphthalene-degrading Pseudomonas putida Cg1. Applied and Environmental Microbiology. 69: 3263-71. PMID 12788725  1
2002 Park W, Padmanabhan P, Padmanabhan S, Zylstra GJ, Madsen EL. nahR, encoding a LysR-type transcriptional regulator, is highly conserved among naphthalene-degrading bacteria isolated from a coal tar waste-contaminated site and in extracted community DNA. Microbiology (Reading, England). 148: 2319-29. PMID 12177326 DOI: 10.1099/00221287-148-8-2319  1
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