Paul M. Ruegger, Ph.D. - Publications

Affiliations: 
2011 Genetics, Genomics and Bioinformatics University of California, Riverside, Riverside, CA, United States 
Area:
Microbiology Biology, Bioinformatics Biology, Genetics

23 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 McNamara MP, Singleton JM, Cadney MD, Ruegger PM, Borneman J, Garland T. Early-life effects of juvenile Western diet and exercise on adult gut microbiome composition in mice. The Journal of Experimental Biology. PMID 33431595 DOI: 10.1242/jeb.239699  0.68
2020 Ramakrishna C, Mendonca S, Ruegger PM, Kim JH, Borneman J, Cantin EM. Herpes simplex virus infection, Acyclovir and IVIG treatment all independently cause gut dysbiosis. Plos One. 15: e0237189. PMID 32760124 DOI: 10.1371/Journal.Pone.0237189  0.68
2020 Shawki A, Ramirez R, Spalinger MR, Ruegger PM, Sayoc-Becerra A, Santos AN, Chatterjee P, Canale V, Mitchell JD, Macbeth JC, Gries CM, Tremblay ML, Hsiao A, Borneman J, McCole DF. The autoimmune susceptibility gene, , restricts expansion of a novel mouse adherent-invasive . Gut Microbes. 1-20. PMID 32586195 DOI: 10.1080/19490976.2020.1775538  0.68
2020 Blacutt A, Ginnan N, Dang T, Bodaghi S, Vidalakis G, Ruegger P, Peacock B, Viravathana P, Campos Vieira F, Drozd C, Jablonska B, Borneman J, McCollum G, Cordoza J, Meloch J, et al. An pipeline to screen and select citrus-associated microbiota with potential anti- Liberibacter asiaticus properties. Applied and Environmental Microbiology. PMID 32086307 DOI: 10.1128/Aem.02883-19  0.68
2019 Ramakrishna C, Corleto J, Ruegger PM, Logan GD, Peacock BB, Mendonca S, Yamaki S, Adamson T, Ermel R, McKemy D, Borneman J, Cantin EM. Dominant Role of the Gut Microbiota in Chemotherapy Induced Neuropathic Pain. Scientific Reports. 9: 20324. PMID 31889131 DOI: 10.1038/S41598-019-56832-X  0.68
2019 Kim JH, Yang B, Tedesco A, Lebig EGD, Ruegger PM, Xu K, Borneman J, Martins-Green M. High Levels of Oxidative Stress and Skin Microbiome are Critical for Initiation and Development of Chronic Wounds in Diabetic Mice. Scientific Reports. 9: 19318. PMID 31848388 DOI: 10.1038/S41598-019-55644-3  0.68
2019 Maier I, Liu J, Ruegger PM, Deutschmann J, Patsch JM, Helbich TH, Borneman J, Schiestl RH. Intestinal bacterial indicator phylotypes associate with impaired DNA double-stranded break sensors but augmented skeletal bone micro-structure. Carcinogenesis. PMID 31840161 DOI: 10.1093/Carcin/Bgz204  0.68
2018 Cheng Z, Zhao L, Dhall D, Ruegger PM, Borneman J, Frykman PK. Bacterial Microbiome Dynamics in Post Pull-Through Hirschsprung-Associated Enterocolitis (HAEC): An Experimental Study Employing the Endothelin Receptor B-Null Mouse Model. Frontiers in Surgery. 5: 30. PMID 29682507 DOI: 10.3389/Fsurg.2018.00030  0.68
2018 Barr T, Sureshchandra S, Ruegger P, Zhang J, Ma W, Borneman J, Grant K, Messaoudi I. Concurrent gut transcriptome and microbiota profiling following chronic ethanol consumption in nonhuman primates. Gut Microbes. 1-44. PMID 29517944 DOI: 10.1080/19490976.2018.1441663  0.68
2016 Jacobs JP, Goudarzi M, Singh N, Tong M, McHardy IH, Ruegger P, Asadourian M, Moon BH, Ayson A, Borneman J, McGovern DP, Fornace AJ, Braun J, Dubinsky M. A Disease-Associated Microbial and Metabolomics State in Relatives of Pediatric Inflammatory Bowel Disease Patients. Cellular and Molecular Gastroenterology and Hepatology. 2: 750-766. PMID 28174747 DOI: 10.1016/J.Jcmgh.2016.06.004  0.68
2016 Jacobs JP, Lin L, Goudarzi M, Ruegger P, McGovern DP, Fornace AJ, Borneman J, Xia L, Braun J. Microbial, metabolomic, and immunologic dynamics in a relapsing genetic mouse model of colitis induced by T-synthase deficiency. Gut Microbes. 0. PMID 27874308 DOI: 10.1080/19490976.2016.1257469  0.68
2016 Cheema AK, Maier I, Dowdy T, Wang Y, Singh R, Ruegger PM, Borneman J, Fornace AJ, Schiestl RH. Chemopreventive Metabolites Are Correlated with a Change in Intestinal Microbiota Measured in A-T Mice and Decreased Carcinogenesis. Plos One. 11: e0151190. PMID 27073845 DOI: 10.1371/Journal.Pone.0151190  0.68
2014 Ruegger PM, Clark RT, Weger JR, Braun J, Borneman J. Improved resolution of bacteria by high throughput sequence analysis of the rRNA internal transcribed spacer. Journal of Microbiological Methods. 105: 82-7. PMID 25034229 DOI: 10.1016/J.Mimet.2014.07.001  0.68
2014 Tong M, McHardy I, Ruegger P, Goudarzi M, Kashyap PC, Haritunians T, Li X, Graeber TG, Schwager E, Huttenhower C, Fornace AJ, Sonnenburg JL, McGovern DP, Borneman J, Braun J. Reprograming of gut microbiome energy metabolism by the FUT2 Crohn's disease risk polymorphism. The Isme Journal. 8: 2193-206. PMID 24781901 DOI: 10.1038/Ismej.2014.64  0.68
2013 McHardy IH, Li X, Tong M, Ruegger P, Jacobs J, Borneman J, Anton P, Braun J. HIV Infection is associated with compositional and functional shifts in the rectal mucosal microbiota. Microbiome. 1: 26. PMID 24451087 DOI: 10.1186/2049-2618-1-26  0.68
2013 McHardy IH, Goudarzi M, Tong M, Ruegger PM, Schwager E, Weger JR, Graeber TG, Sonnenburg JL, Horvath S, Huttenhower C, McGovern DP, Fornace AJ, Borneman J, Braun J. Integrative analysis of the microbiome and metabolome of the human intestinal mucosal surface reveals exquisite inter-relationships. Microbiome. 1: 17. PMID 24450808 DOI: 10.1186/2049-2618-1-17  0.68
2013 Yamamoto ML, Maier I, Dang AT, Berry D, Liu J, Ruegger PM, Yang JI, Soto PA, Presley LL, Reliene R, Westbrook AM, Wei B, Loy A, Chang C, Braun J, et al. Intestinal bacteria modify lymphoma incidence and latency by affecting systemic inflammatory state, oxidative stress, and leukocyte genotoxicity. Cancer Research. 73: 4222-32. PMID 23860718 DOI: 10.1158/0008-5472.Can-13-0022  0.68
2012 Yang JI, Ruegger PM, McKenry MV, Becker JO, Borneman J. Correlations between root-associated microorganisms and peach replant disease symptoms in a California soil. Plos One. 7: e46420. PMID 23071565 DOI: 10.1371/Journal.Pone.0046420  0.68
2012 Ruegger PM, Bent E, Li W, Jeske DR, Cui X, Braun J, Jiang T, Borneman J. Improving oligonucleotide fingerprinting of rRNA genes by implementation of polony microarray technology. Journal of Microbiological Methods. 90: 235-40. PMID 22640891 DOI: 10.1016/J.Mimet.2012.05.013  0.68
2012 Presley LL, Ye J, Li X, Leblanc J, Zhang Z, Ruegger PM, Allard J, McGovern D, Ippoliti A, Roth B, Cui X, Jeske DR, Elashoff D, Goodglick L, Braun J, et al. Host-microbe relationships in inflammatory bowel disease detected by bacterial and metaproteomic analysis of the mucosal-luminal interface. Inflammatory Bowel Diseases. 18: 409-17. PMID 21698720 DOI: 10.1002/Ibd.21793  0.68
2011 Ruegger PM, Della Vedova G, Jiang T, Borneman J. Improving probe set selection for microbial community analysis by leveraging taxonomic information of training sequences. Bmc Bioinformatics. 12: 394. PMID 21985453 DOI: 10.1186/1471-2105-12-394  0.68
2010 Li W, Ruegger PM, Borneman J, Jiang T. Polony identification using the EM algorithm based on a Gaussian mixture model 10th Ieee International Conference On Bioinformatics and Bioengineering 2010, Bibe 2010. 220-225. DOI: 10.1109/BIBE.2010.43  0.68
2008 Fu Q, Ruegger P, Bent E, Chrobak M, Borneman J. PRISE (PRImer SElector): software for designing sequence-selective PCR primers. Journal of Microbiological Methods. 72: 263-7. PMID 18221808 DOI: 10.1016/J.Mimet.2007.12.004  0.68
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