| Year |
Citation |
Score |
| 2020 |
Jeon S, Bhak Y, Choi Y, Jeon Y, Kim S, Jang J, Jang J, Blazyte A, Kim C, Kim Y, Shim J, Kim N, Kim YJ, Park SG, Kim J, ... ... Edwards JS, et al. Korean Genome Project: 1094 Korean personal genomes with clinical information. Science Advances. 6: eaaz7835. PMID 32766443 DOI: 10.1126/Sciadv.Aaz7835 |
0.355 |
|
| 2020 |
Weber JA, Park SG, Luria V, Jeon S, Kim HM, Jeon Y, Bhak Y, Jun JH, Kim SW, Hong WH, Lee S, Cho YS, Karger A, Cain JW, Manica A, ... ... Edwards JS, et al. The whale shark genome reveals how genomic and physiological properties scale with body size. Proceedings of the National Academy of Sciences of the United States of America. PMID 32753383 DOI: 10.1073/Pnas.1922576117 |
0.4 |
|
| 2020 |
Lee H, Kim J, Weber JA, Chung O, Cho YS, Jho S, Jun J, Kim HM, Lim J, Choi JP, Jeon S, Blazyte A, Edwards JS, Paek WK, Bhak J. Whole Genome Analysis of the Red-Crowned Crane Provides Insight into Avian Longevity. Molecules and Cells. PMID 31940721 DOI: 10.14348/Molcells.2019.0190 |
0.413 |
|
| 2018 |
Chen S, Huang T, Xu M, Melançon CE, Edwards J. Surveying the genomic landscape of somatic short insertions and deletions in over 2,000 cancer patients. Journal of Clinical Oncology. 36: e24083-e24083. DOI: 10.1200/Jco.2018.36.15_Suppl.E24083 |
0.308 |
|
| 2017 |
Cho YS, Kim H, Kim HM, Jho S, Jun J, Lee YJ, Chae KS, Kim CG, Kim S, Eriksson A, Edwards JS, Lee S, Kim BC, Manica A, Oh TK, et al. Corrigendum: An ethnically relevant consensus Korean reference genome is a step towards personal reference genomes. Nature Communications. 8: 16168. PMID 28991236 DOI: 10.1038/Ncomms16168 |
0.325 |
|
| 2015 |
Chung O, Jin S, Cho YS, Lim J, Kim H, Jho S, Kim HM, Jun J, Lee H, Chon A, Ko J, Edwards J, Weber JA, Han K, O'Brien SJ, et al. The first whole genome and transcriptome of the cinereous vulture reveals adaptation in the gastric and immune defense systems and possible convergent evolution between the Old and New World vultures. Genome Biology. 16: 215. PMID 26486310 DOI: 10.1186/S13059-015-0780-4 |
0.358 |
|
| 2015 |
Ogasawara Y, Torrez-Martinez N, Aragon AD, Yackley BJ, Weber JA, Sundararajan A, Ramaraj T, Edwards JS, Melançon CE. High-Quality Draft Genome Sequence of Actinobacterium Kibdelosporangium sp. MJ126-NF4, Producer of Type II Polyketide Azicemicins, Using Illumina and PacBio Technologies. Genome Announcements. 3. PMID 25838474 DOI: 10.1128/Genomea.00114-15 |
0.301 |
|
| 2014 |
Jun J, Cho YS, Hu H, Kim HM, Jho S, Gadhvi P, Park KM, Lim J, Paek WK, Han K, Manica A, Edwards JS, Bhak J. Whole genome sequence and analysis of the Marwari horse breed and its genetic origin. Bmc Genomics. 15: S4. PMID 25521865 DOI: 10.1186/1471-2164-15-S9-S4 |
0.363 |
|
| 2014 |
Yim HS, Cho YS, Guang X, Kang SG, Jeong JY, Cha SS, Oh HM, Lee JH, Yang EC, Kwon KK, Kim YJ, Kim TW, Kim W, Jeon JH, Kim SJ, ... ... Edwards J, et al. Minke whale genome and aquatic adaptation in cetaceans. Nature Genetics. 46: 88-92. PMID 24270359 DOI: 10.1038/Ng.2835 |
0.376 |
|
| 2013 |
Kroll E, Coyle S, Dunn B, Koniges G, Aragon A, Edwards J, Rosenzweig F. Starvation-associated genome restructuring can lead to reproductive isolation in yeast. Plos One. 8: e66414. PMID 23894280 DOI: 10.1371/Journal.Pone.0066414 |
0.31 |
|
| 2012 |
Aragon AD, Torrez-Martinez N, Edwards JS. Genomic analysis of Saccharomyces cerevisiae isolates that grow optimally with glucose as the sole carbon source. Electrophoresis. 33: 3514-20. PMID 23135695 DOI: 10.1002/Elps.201200172 |
0.353 |
|
| 2012 |
Singh AP, Andries E, Edwards JS, Steinberg S. The shuttling scaffold model for prevention of yeast pheromone pathway misactivation. Bulletin of Mathematical Biology. 74: 2861-74. PMID 23104201 DOI: 10.1007/S11538-012-9785-2 |
0.343 |
|
| 2010 |
Radhakrishnan K, Halász A, Vlachos D, Edwards JS. Quantitative understanding of cell signaling: the importance of membrane organization. Current Opinion in Biotechnology. 21: 677-82. PMID 20829029 DOI: 10.1016/J.Copbio.2010.08.006 |
0.313 |
|
| 2010 |
Ogunnaike BA, Gelmi CA, Edwards JS. A probabilistic framework for microarray data analysis: fundamental probability models and statistical inference. Journal of Theoretical Biology. 264: 211-22. PMID 20170665 DOI: 10.1016/J.Jtbi.2010.02.021 |
0.312 |
|
| 2006 |
Kauffman KJ, Ogunnaike BA, Edwards JS. Designing experiments that aid in the identification of regulatory networks. Briefings in Functional Genomics & Proteomics. 4: 331-42. PMID 17202124 DOI: 10.1093/Bfgp/Eli004 |
0.352 |
|
| 2006 |
Edwards J. Small genomes and big science. Genome Biology. 7: 308-308. PMID 16542497 DOI: 10.1186/Gb-2006-7-3-308 |
0.334 |
|
| 2005 |
Chatterjee A, Mayawala K, Edwards JS, Vlachos DG. Time accelerated Monte Carlo simulations of biological networks using the binomial tau-leap method. Bioinformatics (Oxford, England). 21: 2136-7. PMID 15699024 DOI: 10.1093/Bioinformatics/Bti308 |
0.305 |
|
| 2005 |
Gadkar KG, Doyle Iii FJ, Edwards JS, Mahadevan R. Estimating optimal profiles of genetic alterations using constraint-based models. Biotechnology and Bioengineering. 89: 243-51. PMID 15593263 DOI: 10.1002/Bit.20349 |
0.334 |
|
| 2004 |
Merritt J, Edwards JS. Assaying gene function by growth competition experiment. Metabolic Engineering. 6: 212-9. PMID 15256211 DOI: 10.1016/J.Ymben.2003.10.009 |
0.341 |
|
| 2004 |
Mikkilineni V, Mitra RD, Merritt J, DiTonno JR, Church GM, Ogunnaike B, Edwards JS. Digital quantitative measurements of gene expression. Biotechnology and Bioengineering. 86: 117-24. PMID 15052631 DOI: 10.1002/Bit.20048 |
0.339 |
|
| 2003 |
Ibarra RU, Fu P, Palsson BO, DiTonno JR, Edwards JS. Quantitative analysis of Escherichia coli metabolic phenotypes within the context of phenotypic phase planes. Journal of Molecular Microbiology and Biotechnology. 6: 101-8. PMID 15044828 DOI: 10.1159/000076740 |
0.597 |
|
| 2003 |
Lall R, Gao G, Dhurjati P, Edwards J. MRAD: Metabolic reaction analysis database--an entity-relationship approach. Journal of Molecular Microbiology and Biotechnology. 6: 12-8. PMID 14593249 DOI: 10.1159/000073404 |
0.444 |
|
| 2003 |
Kauffman KJ, Prakash P, Edwards JS. Advances in flux balance analysis. Current Opinion in Biotechnology. 14: 491-6. PMID 14580578 DOI: 10.1016/J.Copbio.2003.08.001 |
0.485 |
|
| 2003 |
Merritt J, DiTonno JR, Mitra RD, Church GM, Edwards JS. Parallel competition analysis of Saccharomyces cerevisiae strains differing by a single base using polymerase colonies. Nucleic Acids Research. 31: e84. PMID 12888536 DOI: 10.1093/Nar/Gng084 |
0.302 |
|
| 2002 |
Ibarra RU, Edwards JS, Palsson BO. Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth. Nature. 420: 186-9. PMID 12432395 DOI: 10.1038/Nature01149 |
0.558 |
|
| 2002 |
Mahadevan R, Edwards JS, Doyle FJ. Dynamic flux balance analysis of diauxic growth in Escherichia coli. Biophysical Journal. 83: 1331-40. PMID 12202358 DOI: 10.1016/S0006-3495(02)73903-9 |
0.464 |
|
| 2002 |
Schilling CH, Covert MW, Famili I, Church GM, Edwards JS, Palsson BO. Genome-scale metabolic model of Helicobacter pylori 26695. Journal of Bacteriology. 184: 4582-93. PMID 12142428 DOI: 10.1128/Jb.184.16.4582-4593.2002 |
0.753 |
|
| 2002 |
Kauffman KJ, Pajerowski JD, Jamshidi N, Palsson BO, Edwards JS. Description and analysis of metabolic connectivity and dynamics in the human red blood cell. Biophysical Journal. 83: 646-62. PMID 12124254 DOI: 10.1016/S0006-3495(02)75198-9 |
0.722 |
|
| 2002 |
Papin JA, Price ND, Edwards JS, Palsson B BØ. The genome-scale metabolic extreme pathway structure in Haemophilus influenzae shows significant network redundancy. Journal of Theoretical Biology. 215: 67-82. PMID 12051985 DOI: 10.1006/Jtbi.2001.2499 |
0.72 |
|
| 2002 |
Edwards JS, Covert M, Palsson B. Metabolic modelling of microbes: the flux-balance approach. Environmental Microbiology. 4: 133-40. PMID 12000313 DOI: 10.1046/J.1462-2920.2002.00282.X |
0.725 |
|
| 2002 |
Edwards JS, Ramakrishna R, Palsson BO. Characterizing the metabolic phenotype: a phenotype phase plane analysis. Biotechnology and Bioengineering. 77: 27-36. PMID 11745171 DOI: 10.1002/Bit.10047 |
0.623 |
|
| 2001 |
Badarinarayana V, Estep PW, Shendure J, Edwards J, Tavazoie S, Lam F, Church GM. Selection analyses of insertional mutants using subgenic-resolution arrays. Nature Biotechnology. 19: 1060-5. PMID 11689852 DOI: 10.1038/Nbt1101-1060 |
0.342 |
|
| 2001 |
Jamshidi N, Edwards JS, Fahland T, Church GM, Palsson BO. Dynamic simulation of the human red blood cell metabolic network. Bioinformatics (Oxford, England). 17: 286-7. PMID 11294796 DOI: 10.1093/Bioinformatics/17.3.286 |
0.688 |
|
| 2001 |
Covert MW, Schilling CH, Famili I, Edwards JS, Goryanin II, Selkov E, Palsson BO. Metabolic modeling of microbial strains in silico. Trends in Biochemical Sciences. 26: 179-86. PMID 11246024 DOI: 10.1016/S0968-0004(00)01754-0 |
0.754 |
|
| 2001 |
Edwards JS, Ibarra RU, Palsson BO. In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data. Nature Biotechnology. 19: 125-30. PMID 11175725 DOI: 10.1038/84379 |
0.621 |
|
| 2001 |
Ramakrishna R, Edwards JS, McCulloch A, Palsson BO. Flux-balance analysis of mitochondrial energy metabolism: consequences of systemic stoichiometric constraints. American Journal of Physiology. Regulatory, Integrative and Comparative Physiology. 280: R695-704. PMID 11171647 DOI: 10.1152/Ajpregu.2001.280.3.R695 |
0.543 |
|
| 2000 |
Schilling CH, Edwards JS, Letscher D, Palsson BØ. Combining pathway analysis with flux balance analysis for the comprehensive study of metabolic systems. Biotechnology and Bioengineering. 71: 286-306. PMID 11291038 DOI: 10.1002/1097-0290(2000)71:4<286::Aid-Bit1018>3.0.Co;2-R |
0.713 |
|
| 2000 |
Edwards JS, Palsson BO. Robustness analysis of the Escherichia coli metabolic network. Biotechnology Progress. 16: 927-39. PMID 11101318 DOI: 10.1021/Bp0000712 |
0.613 |
|
| 2000 |
Edwards JS, Palsson BO. Multiple steady states in kinetic models of red cell metabolism. Journal of Theoretical Biology. 207: 125-7. PMID 11027485 DOI: 10.1006/Jtbi.2000.2165 |
0.541 |
|
| 2000 |
Edwards JS, Palsson BO. Metabolic flux balance analysis and the in silico analysis of Escherichia coli K-12 gene deletions. Bmc Bioinformatics. 1: 1. PMID 11001586 DOI: 10.1186/1471-2105-1-1 |
0.618 |
|
| 2000 |
Edwards JS, Palsson BO. The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilities. Proceedings of the National Academy of Sciences of the United States of America. 97: 5528-33. PMID 10805808 DOI: 10.1073/Pnas.97.10.5528 |
0.618 |
|
| 1999 |
Edwards JS, Palsson BO. Systems properties of the Haemophilus influenzae Rd metabolic genotype. The Journal of Biological Chemistry. 274: 17410-6. PMID 10364169 DOI: 10.1074/Jbc.274.25.17410 |
0.596 |
|
| 1999 |
Schilling CH, Edwards JS, Palsson BO. Toward metabolic phenomics: analysis of genomic data using flux balances. Biotechnology Progress. 15: 288-95. PMID 10356245 DOI: 10.1021/Bp9900357 |
0.724 |
|
| 1998 |
Edwards JS, Palsson BO. How will bioinformatics influence metabolic engineering? Biotechnology and Bioengineering. 58: 162-9. PMID 10191386 DOI: 10.1002/(Sici)1097-0290(19980420)58:2/3<162::Aid-Bit8>3.0.Co;2-J |
0.624 |
|
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