Kurt Fredrick - Publications

Affiliations: 
Ohio State University, Columbus, Columbus, OH 
Area:
Microbiology Biology

52 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Jha V, Roy B, Jahagirdar D, McNutt ZA, Shatoff EA, Boleratz BL, Watkins DE, Bundschuh R, Basu K, Ortega J, Fredrick K. Structural basis of sequestration of the anti-Shine-Dalgarno sequence in the Bacteroidetes ribosome. Nucleic Acids Research. PMID 33330920 DOI: 10.1093/nar/gkaa1195  0.56
2020 Gibbs MR, Moon KM, Warner BR, Chen M, Bundschuh R, Foster LJ, Fredrick K. Functional Analysis of BipA in E. coli Reveals the Natural Plasticity of 50S Subunit Assembly. Journal of Molecular Biology. PMID 32710983 DOI: 10.1016/j.jmb.2020.07.013  0.56
2020 Ying L, Zhu H, Fosso MY, Garneau-Tsodikova S, Fredrick K. Modified Aminoglycosides Bind Nucleic Acids in High-Molecular-Weight Complexes. Antibiotics (Basel, Switzerland). 9. PMID 32098020 DOI: 10.3390/antibiotics9020093  0.32
2019 Baez WD, Roy B, McNutt ZA, Shatoff EA, Chen S, Bundschuh R, Fredrick K. Global analysis of protein synthesis in Flavobacterium johnsoniae reveals the use of Kozak-like sequences in diverse bacteria. Nucleic Acids Research. PMID 31602466 DOI: 10.1093/nar/gkz855  0.56
2018 Hoffer ED, Maehigashi T, Fredrick K, Dunham CM. Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding. Nucleic Acids Research. PMID 30476222 DOI: 10.1093/nar/gky1178  0.88
2018 Ying L, Zhu H, Shoji S, Fredrick K. Roles of specific aminoglycoside-ribosome interactions in the inhibition of translation. Rna (New York, N.Y.). PMID 30413565 DOI: 10.1261/rna.068460.118  1
2018 Zhao D, Baez W, Fredrick K, Bundschuh R. RiboProP: A Probabilistic Ribosome Positioning Algorithm for Ribosome Profiling. Bioinformatics (Oxford, England). PMID 30304369 DOI: 10.1093/bioinformatics/bty854  0.56
2018 Dai X, Zhu M, Warren M, Balakrishnan R, Okano H, Williamson JR, Fredrick K, Hwa T. Slowdown of Translational Elongation inunder Hyperosmotic Stress. Mbio. 9. PMID 29440576 DOI: 10.1128/mBio.02375-17  0.36
2017 Roy B, Liu Q, Shoji S, Fredrick K. IF2 and unique features of initiator tRNA(fMet) help establish the translational reading frame. Rna Biology. 0. PMID 28914580 DOI: 10.1080/15476286.2017.1379636  1
2017 Gibbs MR, Moon KM, Chen M, Balakrishnan R, Foster LJ, Fredrick K. Conserved GTPase LepA (Elongation Factor 4) functions in biogenesis of the 30S subunit of the 70S ribosome. Proceedings of the National Academy of Sciences of the United States of America. PMID 28096346 DOI: 10.1073/pnas.1613665114  0.36
2016 Dai X, Zhu M, Warren M, Balakrishnan R, Patsalo V, Okano H, Williamson JR, Fredrick K, Wang YP, Hwa T. Reduction of translating ribosomes enables Escherichia coli to maintain elongation rates during slow growth. Nature Microbiology. 2: 16231. PMID 27941827 DOI: 10.1038/nmicrobiol.2016.231  0.36
2016 Fleming IM, Paris Z, Gaston KW, Balakrishnan R, Fredrick K, Rubio MA, Alfonzo JD. A tRNA methyltransferase paralog is important for ribosome stability and cell division in Trypanosoma brucei. Scientific Reports. 6: 21438. PMID 26888608 DOI: 10.1038/srep21438  0.36
2016 Ying L, Fredrick K. Epistasis analysis of 16S rRNA ram mutations helps define the conformational dynamics of the ribosome that influence decoding. Rna (New York, N.Y.). 22: 499-505. PMID 26873598 DOI: 10.1261/rna.054486.115  1
2015 Fosso MY, Zhu H, Green KD, Garneau-Tsodikova S, Fredrick K. Tobramycin Variants with Enhanced Ribosome-Targeting Activity. Chembiochem : a European Journal of Chemical Biology. 16: 1565-70. PMID 26033429 DOI: 10.1002/cbic.201500256  1
2015 McGinnis JL, Liu Q, Lavender CA, Devaraj A, McClory SP, Fredrick K, Weeks KM. In-cell SHAPE reveals that free 30S ribosome subunits are in the inactive state. Proceedings of the National Academy of Sciences of the United States of America. 112: 2425-30. PMID 25675474 DOI: 10.1073/pnas.1411514112  1
2014 Balakrishnan R, Oman K, Shoji S, Bundschuh R, Fredrick K. The conserved GTPase LepA contributes mainly to translation initiation in Escherichia coli. Nucleic Acids Research. 42: 13370-83. PMID 25378333 DOI: 10.1093/nar/gku1098  0.36
2014 McClory SP, Devaraj A, Fredrick K. Distinct functional classes of ram mutations in 16S rRNA. Rna (New York, N.Y.). 20: 496-504. PMID 24572811 DOI: 10.1261/rna.043331.113  1
2014 Fredrick K, Ibba M. The ABCs of the ribosome. Nature Structural & Molecular Biology. 21: 115-6. PMID 24500425 DOI: 10.1038/nsmb.2765  1
2014 Xia X, Piao X, Fredrick K, Bong D. Bifacial PNA complexation inhibits enzymatic access to DNA and RNA. Chembiochem : a European Journal of Chemical Biology. 15: 31-6. PMID 24259287 DOI: 10.1002/cbic.201300536  1
2014 Liu T, Kaplan A, Alexander L, Yan S, Wen JD, Lancaster L, Wickersham CE, Fredrick K, Noller H, Tinoco I, Bustamante CJ. Direct measurement of the mechanical work during translocation by the ribosome Elife. 3: 1-12. DOI: 10.7554/eLife.03406  1
2013 Qin D, Fredrick K. Analysis of polysomes from bacteria. Methods in Enzymology. 530: 159-72. PMID 24034320 DOI: 10.1016/B978-0-12-420037-1.00008-7  1
2013 Fagan CE, Dunkle JA, Maehigashi T, Dang MN, Devaraj A, Miles SJ, Qin D, Fredrick K, Dunham CM. Reorganization of an intersubunit bridge induced by disparate 16S ribosomal ambiguity mutations mimics an EF-Tu-bound state. Proceedings of the National Academy of Sciences of the United States of America. 110: 9716-21. PMID 23630274 DOI: 10.1073/pnas.1301585110  1
2012 Qin D, Liu Q, Devaraj A, Fredrick K. Role of helix 44 of 16S rRNA in the fidelity of translation initiation. Rna (New York, N.Y.). 18: 485-95. PMID 22279149 DOI: 10.1261/rna.031203.111  1
2010 Devaraj A, Fredrick K. Short spacing between the Shine-Dalgarno sequence and P codon destabilizes codon-anticodon pairing in the P site to promote +1 programmed frameshifting. Molecular Microbiology. 78: 1500-9. PMID 21143320 DOI: 10.1111/j.1365-2958.2010.07421.x  1
2010 McClory SP, Leisring JM, Qin D, Fredrick K. Missense suppressor mutations in 16S rRNA reveal the importance of helices h8 and h14 in aminoacyl-tRNA selection. Rna (New York, N.Y.). 16: 1925-34. PMID 20699303 DOI: 10.1261/rna.2228510  0.8
2010 Fredrick K, Ibba M. How the sequence of a gene can tune its translation. Cell. 141: 227-9. PMID 20403320 DOI: 10.1016/j.cell.2010.03.033  1
2010 Shoji S, Janssen BD, Hayes CS, Fredrick K. Translation factor LepA contributes to tellurite resistance in Escherichia coli but plays no apparent role in the fidelity of protein synthesis. Biochimie. 92: 157-63. PMID 19925844 DOI: 10.1016/j.biochi.2009.11.002  1
2009 Garza-Sánchez F, Shoji S, Fredrick K, Hayes CS. RNase II is important for A-site mRNA cleavage during ribosome pausing. Molecular Microbiology. 73: 882-97. PMID 19627501 DOI: 10.1111/j.1365-2958.2009.06813.x  1
2009 Shoji S, Abdi NM, Bundschuh R, Fredrick K. Contribution of ribosomal residues to P-site tRNA binding. Nucleic Acids Research. 37: 4033-42. PMID 19417061 DOI: 10.1093/nar/gkp296  1
2009 Ling J, So BR, Yadavalli SS, Roy H, Shoji S, Fredrick K, Musier-Forsyth K, Ibba M. Resampling and editing of mischarged tRNA prior to translation elongation. Molecular Cell. 33: 654-60. PMID 19285947 DOI: 10.1016/j.molcel.2009.01.031  1
2009 Shoji S, Walker SE, Fredrick K. Ribosomal translocation: one step closer to the molecular mechanism. Acs Chemical Biology. 4: 93-107. PMID 19173642 DOI: 10.1021/cb8002946  1
2009 Qin D, Fredrick K. Control of translation initiation involves a factor-induced rearrangement of helix 44 of 16S ribosomal RNA. Molecular Microbiology. 71: 1239-49. PMID 19154330 DOI: 10.1111/j.1365-2958.2009.06598.x  1
2009 Fredrick K, Ibba M. Protein synthesis: Errors rectified in retrospect. Nature. 457: 157-8. PMID 19129838 DOI: 10.1038/457157a  1
2009 Devaraj A, Shoji S, Holbrook ED, Fredrick K. A role for the 30S subunit E site in maintenance of the translational reading frame. Rna (New York, N.Y.). 15: 255-65. PMID 19095617 DOI: 10.1261/rna.1320109  1
2008 Walker SE, Shoji S, Pan D, Cooperman BS, Fredrick K. Role of hybrid tRNA-binding states in ribosomal translocation. Proceedings of the National Academy of Sciences of the United States of America. 105: 9192-7. PMID 18591673 DOI: 10.1073/pnas.0710146105  1
2008 Borovinskaya MA, Shoji S, Fredrick K, Cate JH. Structural basis for hygromycin B inhibition of protein biosynthesis. Rna (New York, N.Y.). 14: 1590-9. PMID 18567815 DOI: 10.1261/rna.1076908  1
2008 Walker SE, Fredrick K. Preparation and evaluation of acylated tRNAs. Methods (San Diego, Calif.). 44: 81-6. PMID 18241790 DOI: 10.1016/j.ymeth.2007.09.003  1
2007 Qin D, Abdi NM, Fredrick K. Characterization of 16S rRNA mutations that decrease the fidelity of translation initiation. Rna (New York, N.Y.). 13: 2348-55. PMID 17942743 DOI: 10.1261/rna.715307  0.76
2007 Ling J, Roy H, Qin D, Rubio MA, Alfonzo JD, Fredrick K, Ibba M. Pathogenic mechanism of a human mitochondrial tRNAPhe mutation associated with myoclonic epilepsy with ragged red fibers syndrome. Proceedings of the National Academy of Sciences of the United States of America. 104: 15299-304. PMID 17878308 DOI: 10.1073/pnas.0704441104  1
2007 Borovinskaya MA, Shoji S, Holton JM, Fredrick K, Cate JH. A steric block in translation caused by the antibiotic spectinomycin. Acs Chemical Biology. 2: 545-52. PMID 17696316 DOI: 10.1021/cb700100n  1
2006 Shoji S, Walker SE, Fredrick K. Reverse translocation of tRNA in the ribosome. Molecular Cell. 24: 931-42. PMID 17189194 DOI: 10.1016/j.molcel.2006.11.025  1
2006 Tram U, Fredrick K, Werren JH, Sullivan W. Paternal chromosome segregation during the first mitotic division determines Wolbachia-induced cytoplasmic incompatibility phenotype. Journal of Cell Science. 119: 3655-63. PMID 16912076 DOI: 10.1242/jcs.03095  1
2006 Walker SE, Fredrick K. Recognition and positioning of mRNA in the ribosome by tRNAs with expanded anticodons. Journal of Molecular Biology. 360: 599-609. PMID 16730356 DOI: 10.1016/j.jmb.2006.05.006  1
2005 McGarry KG, Walker SE, Wang H, Fredrick K. Destabilization of the P site codon-anticodon helix results from movement of tRNA into the P/E hybrid state within the ribosome. Molecular Cell. 20: 613-22. PMID 16307924 DOI: 10.1016/j.molcel.2005.10.007  1
2005 Yassin A, Fredrick K, Mankin AS. Deleterious mutations in small subunit ribosomal RNA identify functional sites and potential targets for antibiotics. Proceedings of the National Academy of Sciences of the United States of America. 102: 16620-5. PMID 16269538 DOI: 10.1073/pnas.0508444102  1
2005 Abdi NM, Fredrick K. Contribution of 16S rRNA nucleotides forming the 30S subunit A and P sites to translation in Escherichia coli. Rna (New York, N.Y.). 11: 1624-32. PMID 16177132 DOI: 10.1261/rna.2118105  0.56
2005 Noller HF, Hoang L, Fredrick K. The 30S ribosomal P site: A function of 16S rRNA Febs Letters. 579: 855-858. PMID 15680962 DOI: 10.1016/j.febslet.2004.11.026  1
2004 Hoang L, Fredrick K, Noller HF. Creating ribosomes with an all-RNA 30S subunit P site Proceedings of the National Academy of Sciences of the United States of America. 101: 12439-12443. PMID 15308780 DOI: 10.1073/pnas.0405227101  1
2003 Fredrick K, Noller HF. Catalysis of ribosomal translocation by sparsomycin Science. 300: 1159-1162. PMID 12750524 DOI: 10.1126/science.1084571  1
2002 Fredrick K, Noller HF. Accurate translocation of mRNA by the ribosome requires a peptidyl group or its analog on the tRNA moving into the 30S P site Molecular Cell. 9: 1125-1131. PMID 12049747 DOI: 10.1016/S1097-2765(02)00523-3  1
2001 Noller HF, Yusupov MM, Yusupova GZ, Baucom A, Lieberman K, Lancaster L, Dallas A, Fredrick K, Earnest TN, Cate JHD. Structure of the ribosome at 5.5 Å resolution and its interactions with functional ligands Cold Spring Harbor Symposia On Quantitative Biology. 66: 57-66. PMID 12762008  1
2000 Fredrick K, Dunny GM, Noller HF. Tagging ribosomal protein S7 allows rapid identification of mutants defective in assembly and function of 30 S subunits Journal of Molecular Biology. 298: 379-394. PMID 10772857 DOI: 10.1006/jmbi.2000.3563  1
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