Kurt Fredrick - Related publications

Affiliations: 
Ohio State University, Columbus, Columbus, OH 
Area:
Microbiology Biology
NOTE: We are testing a new system for identifying relevant work based on semantic analysis that identifies similarities between recently published papers and the current author's publications. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches.
50 most relevant papers in past 60 days:
Year Citation  Score
2021 Masuda I, Hwang JY, Christian T, Maharjan S, Mohammad F, Gamper H, Buskirk AR, Hou YM. Loss of -methylation of G37 in tRNA induces ribosome stalling and reprograms gene expression. Elife. 10. PMID 34382933 DOI: 10.7554/eLife.70619   
2021 Rundlet EJ, Holm M, Schacherl M, Natchiar SK, Altman RB, Spahn CMT, Myasnikov AG, Blanchard SC. Structural basis of early translocation events on the ribosome. Nature. PMID 34234344 DOI: 10.1038/s41586-021-03713-x   
2021 Kulkarni S, Rubio MAT, Hegedűsová E, Ross RL, Limbach PA, Alfonzo JD, Paris Z. Preferential import of queuosine-modified tRNAs into Trypanosoma brucei mitochondrion is critical for organellar protein synthesis. Nucleic Acids Research. PMID 34244755 DOI: 10.1093/nar/gkab567   
2021 Warren JM, Salinas-Giegé T, Triant DA, Taylor DR, Drouard L, Sloan DB. Rapid shifts in mitochondrial tRNA import in a plant lineage with extensive mitochondrial tRNA gene loss. Molecular Biology and Evolution. PMID 34436590 DOI: 10.1093/molbev/msab255   
2021 Xu D, Wang Y. smFRET study of rRNA dimerization at the peptidyl transfer center. Biophysical Chemistry. 277: 106657. PMID 34303893 DOI: 10.1016/j.bpc.2021.106657   
2021 Chan PP, Lin BY, Mak AJ, Lowe TM. tRNAscan-SE 2.0: improved detection and functional classification of transfer RNA genes. Nucleic Acids Research. PMID 34417604 DOI: 10.1093/nar/gkab688   
2021 Demo G, Gamper HB, Loveland AB, Masuda I, Carbone CE, Svidritskiy E, Hou YM, Korostelev AA. Structural basis for +1 ribosomal frameshifting during EF-G-catalyzed translocation. Nature Communications. 12: 4644. PMID 34330903 DOI: 10.1038/s41467-021-24911-1   
2021 Gamper H, Mao Y, Masuda I, McGuigan H, Blaha G, Wang Y, Xu S, Hou YM. Twice exploration of tRNA +1 frameshifting in an elongation cycle of protein synthesis. Nucleic Acids Research. PMID 34417618 DOI: 10.1093/nar/gkab734   
2021 Ma J, Han H, Huang Y, Yang C, Zheng S, Cai T, Bi J, Huang X, Liu R, Huang L, Luo Y, Li W, Lin S. METTL1/WDR4 mediated mG tRNA modifications and mG codon usage promote mRNA translation and lung cancer progression. Molecular Therapy : the Journal of the American Society of Gene Therapy. PMID 34371184 DOI: 10.1016/j.ymthe.2021.08.005   
2021 Wang Y. Single Molecule Fluorescence Energy Transfer Study of Ribosome Protein Synthesis. Journal of Visualized Experiments : Jove. PMID 34309604 DOI: 10.3791/62664   
2021 Wang Y. Single Molecule Fluorescence Energy Transfer Study of Ribosome Protein Synthesis. Journal of Visualized Experiments : Jove. PMID 34309604 DOI: 10.3791/62664   
2021 Aslam M, Huang X, Yan M, She Z, Lu X, Fakher B, Chen Y, Li G, Qin Y. TRM61 is essential for Arabidopsis embryo and endosperm development. Plant Reproduction. PMID 34406456 DOI: 10.1007/s00497-021-00428-x   
2021 Vargas-Rodriguez O, Badran AH, Hoffman KS, Chen M, Crnković A, Ding Y, Krieger JR, Westhof E, Söll D, Melnikov S. Bacterial translation machinery for deliberate mistranslation of the genetic code. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34413202 DOI: 10.1073/pnas.2110797118   
2021 Santamaría-Gómez J, Rubio MÁ, López-Igual R, Romero-Losada AB, Delgado-Chaves FM, Bru-Martínez R, Romero-Campero FJ, Herrero A, Ibba M, Ochoa de Alda JAG, Luque I. Role of a cryptic tRNA gene operon in survival under translational stress. Nucleic Acids Research. PMID 34379789 DOI: 10.1093/nar/gkab661   
2021 Ju Y, Han L, Chen B, Luo Z, Gu Q, Xu J, Yang XL, Schimmel P, Zhou H. X-shaped structure of bacterial heterotetrameric tRNA synthetase suggests cryptic prokaryote functions and a rationale for synthetase classifications. Nucleic Acids Research. PMID 34390350 DOI: 10.1093/nar/gkab707   
2021 Yan S, Lyu B, Tang X, Lu H, Tang J, Meng R, Cai B, Yang F. Complete mitochondrial genome of nipa palm hispid beetle Maulik (Coleoptera: Chrysomelidae: Cassidinae). Mitochondrial Dna. Part B, Resources. 6: 2652-2653. PMID 34435108 DOI: 10.1080/23802359.2021.1934172   
2021 Paris Z, Svobodová M, Kachale A, Horáková E, Nenarokova A, Lukeš J. A mitochondrial cytidine deaminase is responsible for C to U editing of tRNA to decode the UGA codon in . Rna Biology. 1-9. PMID 34224320 DOI: 10.1080/15476286.2021.1940445   
2021 Nagai R, Xu Y, Liu C, Shimabukuro A, Takeuchi-Tomita N. In Vitro Reconstitution of Yeast Translation System Capable of Synthesizing Long Polypeptide and Recapitulating Programmed Ribosome Stalling. Methods and Protocols. 4. PMID 34287320 DOI: 10.3390/mps4030045   
2021 Nagai R, Xu Y, Liu C, Shimabukuro A, Takeuchi-Tomita N. In Vitro Reconstitution of Yeast Translation System Capable of Synthesizing Long Polypeptide and Recapitulating Programmed Ribosome Stalling. Methods and Protocols. 4. PMID 34287320 DOI: 10.3390/mps4030045   
2021 Bou-Nader C, Muecksch F, Brown JB, Gordon JM, York A, Peng C, Ghirlando R, Summers MF, Bieniasz PD, Zhang J. HIV-1 matrix-tRNA complex structure reveals basis for host control of Gag localization. Cell Host & Microbe. PMID 34384537 DOI: 10.1016/j.chom.2021.07.006   
2021 Tharp JM, Walker JA, Söll D, Schepartz A. Initiating protein synthesis with noncanonical monomers in vitro and in vivo. Methods in Enzymology. 656: 495-519. PMID 34325796 DOI: 10.1016/bs.mie.2021.05.002   
2021 Liu Z, Kim HK, Xu J, Jing Y, Kay MA. The 3'tsRNAs are aminoacylated: Implications for their biogenesis. Plos Genetics. 17: e1009675. PMID 34324497 DOI: 10.1371/journal.pgen.1009675   
2021 Orellana EA, Liu Q, Yankova E, Pirouz M, De Braekeleer E, Zhang W, Lim J, Aspris D, Sendinc E, Garyfallos DA, Gu M, Ali R, Gutierrez A, Mikutis S, Bernardes GJL, et al. METTL1-mediated mG modification of Arg-TCT tRNA drives oncogenic transformation. Molecular Cell. PMID 34352207 DOI: 10.1016/j.molcel.2021.06.031   
2021 Teramoto T, Koyasu T, Adachi N, Kawasaki M, Moriya T, Numata T, Senda T, Kakuta Y. Minimal protein-only RNase P structure reveals insights into tRNA precursor recognition and catalysis. The Journal of Biological Chemistry. 101028. PMID 34339732 DOI: 10.1016/j.jbc.2021.101028   
2021 Dunkelmann DL, Oehm SB, Beattie AT, Chin JW. A 68-codon genetic code to incorporate four distinct non-canonical amino acids enabled by automated orthogonal mRNA design. Nature Chemistry. PMID 34426682 DOI: 10.1038/s41557-021-00764-5   
2021 Lipońska A, Yap MF. Hibernation-Promoting Factor Sequesters Staphylococcus aureus Ribosomes to Antagonize RNase R-Mediated Nucleolytic Degradation. Mbio. e0033421. PMID 34253058 DOI: 10.1128/mBio.00334-21   
2021 Gay DM, Lund AH, Jansson MD. Translational control through ribosome heterogeneity and functional specialization. Trends in Biochemical Sciences. PMID 34312084 DOI: 10.1016/j.tibs.2021.07.001   
2021 Bao C, Ermolenko DN. Ribosome as a Translocase and Helicase. Biochemistry. Biokhimiia. 86: 992-1002. PMID 34488575 DOI: 10.1134/S0006297921080095   
2021 Dai Z, Liu H, Liao J, Huang C, Ren X, Zhu W, Zhu S, Peng B, Li S, Lai J, Liang L, Xu L, Peng S, Lin S, Kuang M. N-Methylguanosine tRNA modification enhances oncogenic mRNA translation and promotes intrahepatic cholangiocarcinoma progression. Molecular Cell. PMID 34352206 DOI: 10.1016/j.molcel.2021.07.003   
2021 Takada H, Crowe-McAuliffe C, Polte C, Sidorova ZY, Murina V, Atkinson GC, Konevega AL, Ignatova Z, Wilson DN, Hauryliuk V. RqcH and RqcP catalyze processive poly-alanine synthesis in a reconstituted ribosome-associated quality control system. Nucleic Acids Research. PMID 34255840 DOI: 10.1093/nar/gkab589   
2021 He Q, Song X, Ma H, Yin Y. The complete mitochondrial genome of (Motschulsky) (Coleoptera: Chrysomelidae). Mitochondrial Dna. Part B, Resources. 6: 2363-2365. PMID 34345697 DOI: 10.1080/23802359.2021.1951138   
2021 GeZi G, Liu R, Du D, Wu N, Bao N, Fan L, Morigen M. YfiF, an unknown protein, affects initiation timing of chromosome replication in Escherichia coli. Journal of Basic Microbiology. PMID 34486756 DOI: 10.1002/jobm.202100265   
2021 Auparakkitanon S, Wilairat P. Universal scanning-free initiation of eukaryote protein translation-a new normal. Biomolecular Concepts. 12: 129-131. PMID 34496168 DOI: 10.1515/bmc-2021-0014   
2021 La Fay C, Hoebeke C, Juzaud M, Spraul A, Heux P, Dubus JC, Hadchouel A, Fabre A. Deep phenotyping of MARS1 (interstitial lung and liver disease) and LARS1 (infantile liver failure syndrome 1) recessive multisystemic disease using Human Phenotype Ontology annotation: Overlap and differences. Case report and review of literature. European Journal of Medical Genetics. 104334. PMID 34496286 DOI: 10.1016/j.ejmg.2021.104334   
2021 Horikoshi T, Noguchi H, Umehara T, Mutsuro-Aoki H, Kurihara R, Noguchi R, Hashimoto T, Watanabe Y, Ando T, Kamata K, Park SY, Tamura K. Crystal structure of Nanoarchaeum equitans tyrosyl-tRNA synthetase and its aminoacylation activity toward tRNA with an extra guanosine residue at the 5'-terminus. Biochemical and Biophysical Research Communications. 575: 90-95. PMID 34461441 DOI: 10.1016/j.bbrc.2021.08.070   
2021 Jeong H, Kim J. Unique anticodon loop conformation with the flipped-out wobble nucleotide in the crystal structure of unbound tRNAVal. Rna (New York, N.Y.). PMID 34315814 DOI: 10.1261/rna.078863.121   
2021 Jeong H, Kim J. Unique anticodon loop conformation with the flipped-out wobble nucleotide in the crystal structure of unbound tRNAVal. Rna (New York, N.Y.). PMID 34315814 DOI: 10.1261/rna.078863.121   
2021 Pellegrino S, Terrosu S, Yusupova G, Yusupov M. Inhibition of the Eukaryotic 80S Ribosome as a Potential Anticancer Therapy: A Structural Perspective. Cancers. 13. PMID 34503202 DOI: 10.3390/cancers13174392   
2021 Blaze J, Navickas A, Phillips HL, Heissel S, Plaza-Jennings A, Miglani S, Asgharian H, Foo M, Katanski CD, Watkins CP, Pennington ZT, Javidfar B, Espeso-Gil S, Rostandy B, Alwaseem H, et al. Neuronal Nsun2 deficiency produces tRNA epitranscriptomic alterations and proteomic shifts impacting synaptic signaling and behavior. Nature Communications. 12: 4913. PMID 34389722 DOI: 10.1038/s41467-021-24969-x   
2021 Cruz J, Lemos B. Post-transcriptional diversity in riboproteins and RNAs in aging and cancer. Seminars in Cancer Biology. PMID 34474152 DOI: 10.1016/j.semcancer.2021.08.012   
2021 Estève C, Roman C, DeLeusse C, Baravalle M, Bertaux K, Blanc F, Bourgeois P, Bresson V, Cano A, Coste ME, Delteil C, Lacoste C, Loosveld M, De Paula AM, Monnier AS, et al. Novel partial loss-of-function variants in the tyrosyl-tRNA synthetase 1 (YARS1) gene involved in multisystem disease. European Journal of Medical Genetics. 104294. PMID 34352414 DOI: 10.1016/j.ejmg.2021.104294   
2021 Yusupova G, Yusupov M. A Path to the Atomic-Resolution Structures of Prokaryotic and Eukaryotic Ribosomes. Biochemistry. Biokhimiia. 86: 926-941. PMID 34488570 DOI: 10.1134/S0006297921080046   
2021 Padmanabhan PK, Ferreira GR, Zghidi-Abouzid O, Oliveira C, Dumas C, Mariz FC, Papadopoulou B. Genetic depletion of the RNA helicase DDX3 leads to impaired elongation of translating ribosomes triggering co-translational quality control of newly synthesized polypeptides. Nucleic Acids Research. PMID 34358325 DOI: 10.1093/nar/gkab667   
2021 Kumar N, Sharma S, Kaushal PS. Protein synthesis in Mycobacterium tuberculosis as a potential target for therapeutic interventions. Molecular Aspects of Medicine. 101002. PMID 34344520 DOI: 10.1016/j.mam.2021.101002   
2021 Hartman MCT. Non-canonical amino acid substrates of E. coli aminoacyl-tRNA synthetases. Chembiochem : a European Journal of Chemical Biology. PMID 34416067 DOI: 10.1002/cbic.202100299   
2021 Ramos J, Fu D. Detection of tRNA-specific adenosine deaminase activity and wobble inosine modification in human cell lysates. Methods in Enzymology. 658: 311-334. PMID 34517952 DOI: 10.1016/bs.mie.2021.06.008   
2021 Cheng J, Berninghausen O, Beckmann R. A distinct assembly pathway of the human 39S late pre-mitoribosome. Nature Communications. 12: 4544. PMID 34315873 DOI: 10.1038/s41467-021-24818-x   
2021 Cheng J, Berninghausen O, Beckmann R. A distinct assembly pathway of the human 39S late pre-mitoribosome. Nature Communications. 12: 4544. PMID 34315873 DOI: 10.1038/s41467-021-24818-x   
2021 Zhou F, Zhang G, Yao L, Yu P, Chen L, Ning Y. The complete mitochondrial genome of (Hymenoptera: Apidae) and phylogenetic analysis. Mitochondrial Dna. Part B, Resources. 6: 2727-2729. PMID 34447884 DOI: 10.1080/23802359.2021.1966329   
2021 Wang Q, Zhan S, Han F, Liu Y, Wu H, Huang Z. The Possible Mechanism of Physiological Adaptation to the Low-Se Diet and Its Health Risk in the Traditional Endemic Areas of Keshan Diseases. Biological Trace Element Research. PMID 34365573 DOI: 10.1007/s12011-021-02851-7