Debashish Bhattacharya - Publications

Genetics University of Iowa, Iowa City, IA 
Genetics, Bioinformatics Biology, Microbiology Biology

96 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Lee J, Cho CH, Park SI, Choi JW, Song HS, West JA, Bhattacharya D, Yoon HS. Parallel evolution of highly conserved plastid genome architecture in red seaweeds and seed plants. Bmc Biology. 14: 75. PMID 27589960 DOI: 10.1186/s12915-016-0299-5  0.56
2016 Ball SG, Bhattacharya D, Weber AP. Infection and the first eukaryotes--Response. Science (New York, N.Y.). 352: 1065-6. PMID 27230371 DOI: 10.1126/science.aaf6733  0.56
2016 Bhattacharya D, Agrawal S, Aranda M, Baumgarten S, Belcaid M, Drake JL, Erwin D, Foret S, Gates RD, Gruber DF, Kamel B, Lesser MP, Levy O, Liew YJ, MacManes M, et al. Comparative genomics explains the evolutionary success of reef-forming corals. Elife. 5. PMID 27218454 DOI: 10.7554/eLife.13288  0.56
2016 Qiu H, Cai G, Luo J, Bhattacharya D, Zhang N. Extensive horizontal gene transfers between plant pathogenic fungi. Bmc Biology. 14: 41. PMID 27215567 DOI: 10.1186/s12915-016-0264-3  0.56
2016 Stephens TG, Bhattacharya D, Ragan MA, Chan CX. PhySortR: a fast, flexible tool for sorting phylogenetic trees in R. Peerj. 4: e2038. PMID 27190724 DOI: 10.7717/peerj.2038  0.56
2016 Leliaert F, Tronholm A, Lemieux C, Turmel M, DePriest MS, Bhattacharya D, Karol KG, Fredericq S, Zechman FW, Lopez-Bautista JM. Chloroplast phylogenomic analyses reveal the deepest-branching lineage of the Chlorophyta, Palmophyllophyceae class. nov. Scientific Reports. 6: 25367. PMID 27157793 DOI: 10.1038/srep25367  0.56
2016 Song HJ, Lee JM, Graf L, Rho M, Qiu H, Bhattacharya D, Yoon HS. A novice’s guide to analyzing NGS-derived organelle and metagenome data Algae. 31: 137-154. DOI: 10.4490/algae.2016.31.6.5  0.56
2014 DePriest MS, Bhattacharya D, López-Bautista JM. The mitochondrial genome of Grateloupia taiwanensis (Halymeniaceae, Rhodophyta) and comparative mitochondrial genomics of red algae. The Biological Bulletin. 227: 191-200. PMID 25411376  0.56
2014 Cheng S, Price DC, Karkar S, Bhattacharya D. Exploring biotic interactions within protist cell populations using network methods. The Journal of Eukaryotic Microbiology. 61: 399-403. PMID 24628693 DOI: 10.1111/jeu.12113  0.56
2014 Rockwell NC, Duanmu D, Martin SS, Bachy C, Price DC, Bhattacharya D, Worden AZ, Lagarias JC. Eukaryotic algal phytochromes span the visible spectrum. Proceedings of the National Academy of Sciences of the United States of America. 111: 3871-6. PMID 24567382 DOI: 10.1073/pnas.1401871111  0.56
2014 Kim KM, Park JH, Bhattacharya D, Yoon HS. Applications of next-generation sequencing to unravelling the evolutionary history of algae. International Journal of Systematic and Evolutionary Microbiology. 64: 333-45. PMID 24505071 DOI: 10.1099/ijs.0.054221-0  0.56
2013 Bhattacharya D, Price DC, Bicep C, Bapteste E, Sarwade M, Rajah VD, Yoon HS. Identification of a Marine Cyanophage in a Protist Single-cell Metagenome Assembly. Journal of Phycology. 49: 207-212. PMID 27008402 DOI: 10.1111/jpy.12028  0.56
2013 Cenci U, Chabi M, Ducatez M, Tirtiaux C, Nirmal-Raj J, Utsumi Y, Kobayashi D, Sasaki S, Suzuki E, Nakamura Y, Putaux JL, Roussel X, Durand-Terrasson A, Bhattacharya D, Vercoutter-Edouart AS, et al. Convergent evolution of polysaccharide debranching defines a common mechanism for starch accumulation in cyanobacteria and plants. The Plant Cell. 25: 3961-75. PMID 24163312 DOI: 10.1105/tpc.113.118174  0.56
2013 Qiu H, Yoon HS, Bhattacharya D. Algal endosymbionts as vectors of horizontal gene transfer in photosynthetic eukaryotes. Frontiers in Plant Science. 4: 366. PMID 24065973 DOI: 10.3389/fpls.2013.00366  0.56
2013 Drake JL, Massa T, Haramaty L, Zelzion E, Bhattacharya D, Falkowski PG. Reply to Ramos-Silva et al.: Regarding coral skeletal proteome. Proceedings of the National Academy of Sciences of the United States of America. 110: E2147-8. PMID 23905183 DOI: 10.1073/pnas.1304591110  0.56
2013 Shoguchi E, Shinzato C, Kawashima T, Gyoja F, Mungpakdee S, Koyanagi R, Takeuchi T, Hisata K, Tanaka M, Fujiwara M, Hamada M, Seidi A, Fujie M, Usami T, Goto H, ... ... Bhattacharya D, et al. Draft assembly of the Symbiodinium minutum nuclear genome reveals dinoflagellate gene structure. Current Biology : Cb. 23: 1399-408. PMID 23850284 DOI: 10.1016/j.cub.2013.05.062  0.56
2013 Gross J, Wajid S, Price DC, Zelzion E, Li J, Chan CX, Bhattacharya D. Evidence for widespread exonic small RNAs in the glaucophyte alga Cyanophora paradoxa. Plos One. 8: e67669. PMID 23844054 DOI: 10.1371/journal.pone.0067669  0.56
2013 Bhattacharya D, Price DC, Chan CX, Qiu H, Rose N, Ball S, Weber AP, Arias MC, Henrissat B, Coutinho PM, Krishnan A, Zäuner S, Morath S, Hilliou F, Egizi A, et al. Genome of the red alga Porphyridium purpureum. Nature Communications. 4: 1941. PMID 23770768 DOI: 10.1038/ncomms2931  0.56
2013 Mass T, Drake JL, Haramaty L, Kim JD, Zelzion E, Bhattacharya D, Falkowski PG. Cloning and characterization of four novel coral acid-rich proteins that precipitate carbonates in vitro. Current Biology : Cb. 23: 1126-31. PMID 23746634 DOI: 10.1016/j.cub.2013.05.007  0.56
2013 Drake JL, Mass T, Haramaty L, Zelzion E, Bhattacharya D, Falkowski PG. Proteomic analysis of skeletal organic matrix from the stony coral Stylophora pistillata. Proceedings of the National Academy of Sciences of the United States of America. 110: 3788-93. PMID 23431140 DOI: 10.1073/pnas.1301419110  0.56
2013 Ball SG, Subtil A, Bhattacharya D, Moustafa A, Weber AP, Gehre L, Colleoni C, Arias MC, Cenci U, Dauvillée D. Metabolic effectors secreted by bacterial pathogens: essential facilitators of plastid endosymbiosis? The Plant Cell. 25: 7-21. PMID 23371946 DOI: 10.1105/tpc.112.101329  0.56
2013 Georgi L, Johnson-Cicalese J, Honig J, Das SP, Rajah VD, Bhattacharya D, Bassil N, Rowland LJ, Polashock J, Vorsa N. The first genetic map of the American cranberry: exploration of synteny conservation and quantitative trait loci. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 126: 673-92. PMID 23224333 DOI: 10.1007/s00122-012-2010-8  0.56
2013 Hackett JD, Wisecaver JH, Brosnahan ML, Kulis DM, Anderson DM, Bhattacharya D, Plumley FG, Erdner DL. Evolution of saxitoxin synthesis in cyanobacteria and dinoflagellates. Molecular Biology and Evolution. 30: 70-8. PMID 22628533 DOI: 10.1093/molbev/mss142  0.56
2012 Chan CX, Blouin NA, Zhuang Y, Zäuner S, Prochnik SE, Lindquist E, Lin S, Benning C, Lohr M, Yarish C, Gantt E, Grossman AR, Lu S, Müller K, W Stiller J, ... ... Bhattacharya D, et al. Porphyra (Bangiophyceae) Transcriptomes Provide Insights Into Red Algal Development And Metabolism. Journal of Phycology. 48: 1328-1342. PMID 27009986 DOI: 10.1111/j.1529-8817.2012.01229.x  0.44
2012 Chan CX, Soares MB, Bonaldo MF, Wisecaver JH, Hackett JD, Anderson DM, Erdner DL, Bhattacharya D. ANALYSIS OF ALEXANDRIUM TAMARENSE (DINOPHYCEAE) GENES REVEALS THE COMPLEX EVOLUTIONARY HISTORY OF A MICROBIAL EUKARYOTE(). Journal of Phycology. 48: 1130-1142. PMID 23066170 DOI: 10.1111/j.1529-8817.2012.01194.x  0.56
2012 Qiu H, Yang EC, Bhattacharya D, Yoon HS. Ancient gene paralogy may mislead inference of plastid phylogeny. Molecular Biology and Evolution. 29: 3333-43. PMID 22617952 DOI: 10.1093/molbev/mss137  0.56
2012 Bhattacharya D, Price DC, Yoon HS, Yang EC, Poulton NJ, Andersen RA, Das SP. Single cell genome analysis supports a link between phagotrophy and primary plastid endosymbiosis. Scientific Reports. 2: 356. PMID 22493757 DOI: 10.1038/srep00356  0.56
2012 Price DC, Chan CX, Yoon HS, Yang EC, Qiu H, Weber AP, Schwacke R, Gross J, Blouin NA, Lane C, Reyes-Prieto A, Durnford DG, Neilson JA, Lang BF, Burger G, ... ... Bhattacharya D, et al. Cyanophora paradoxa genome elucidates origin of photosynthesis in algae and plants. Science (New York, N.Y.). 335: 843-7. PMID 22344442 DOI: 10.1126/science.1213561  0.56
2012 Chan CX, Zäuner S, Wheeler G, Grossman AR, Prochnik SE, Blouin NA, Zhuang Y, Benning C, Berg GM, Yarish C, Eriksen RL, Klein AS, Lin S, Levine I, Brawley SH, ... Bhattacharya D, et al. Analysis of Porphyra membrane transporters demonstrates gene transfer among photosynthetic eukaryotes and numerous sodium-coupled transport systems. Plant Physiology. 158: 2001-12. PMID 22337920 DOI: 10.1104/pp.112.193896  0.56
2012 Chan CX, Blouin NA, Zhuang Y, Zäuner S, Prochnik SE, Lindquist E, Lin S, Benning C, Lohr M, Yarish C, Gantt E, Grossman AR, Lu S, Müller K, Stiller J, ... ... Bhattacharya D, et al. Porphyra (Bangiophyceae) Transcriptomes Provide Insights Into Red Algal Development And Metabolism Journal of Phycology. 48: 1328-1342. DOI: 10.1111/j.1529-8817.2012.01229.x  0.56
2012 Steiner JM, Bhattacharya D, Löffelhardt W. Conservative sorting in the muroplasts of Cyanophora paradoxa: A reevaluation based on the completed genome sequence Symbiosis. 58: 127-133. DOI: 10.1007/s13199-012-0203-1  0.56
2011 Chan CX, Reyes-Prieto A, Bhattacharya D. Red and green algal origin of diatom membrane transporters: insights into environmental adaptation and cell evolution. Plos One. 6: e29138. PMID 22195008 DOI: 10.1371/journal.pone.0029138  0.56
2011 Bhattacharya D. As an evolutionary biologist. Debashish Bhattacharya. Current Biology : Cb. 21: R676-7. PMID 22053333 DOI: 10.1016/j.cub.2011.06.013  0.56
2011 Chan CX, Bhattacharya D. Non-random sharing of Plantae genes. Communicative & Integrative Biology. 4: 361-3. PMID 21980581 DOI: 10.4161/cib.4.3.15700  0.56
2011 Yoon HS, Price DC, Stepanauskas R, Rajah VD, Sieracki ME, Wilson WH, Yang EC, Duffy S, Bhattacharya D. Single-cell genomics reveals organismal interactions in uncultivated marine protists. Science (New York, N.Y.). 332: 714-7. PMID 21551060 DOI: 10.1126/science.1203163  0.56
2011 Chan CX, Gross J, Yoon HS, Bhattacharya D. Plastid origin and evolution: new models provide insights into old problems. Plant Physiology. 155: 1552-60. PMID 21343425 DOI: 10.1104/pp.111.173500  0.56
2011 Chan CX, Yang EC, Banerjee T, Yoon HS, Martone PT, Estevez JM, Bhattacharya D. Red and green algal monophyly and extensive gene sharing found in a rich repertoire of red algal genes. Current Biology : Cb. 21: 328-33. PMID 21315598 DOI: 10.1016/j.cub.2011.01.037  0.56
2011 Reeb V, Kolel A, McDermott TR, Bhattacharya D. Good to the bone: microbial community thrives within bone cavities of a bison carcass at Yellowstone National Park. Environmental Microbiology. 13: 2403-15. PMID 21044237 DOI: 10.1111/j.1462-2920.2010.02359.x  0.56
2010 Boo SM, Kim HS, Shin W, Boo GH, Cho SM, Jo BY, Kim JH, Kim JH, Yang EC, Siver PA, Wolfe AP, Bhattacharya D, Andersen RA, Yoon HS. Complex phylogeographic patterns in the freshwater alga Synura provide new insights into ubiquity vs. endemism in microbial eukaryotes. Molecular Ecology. 19: 4328-38. PMID 25241409 DOI: 10.1111/j.1365-294X.2010.04813.x  0.56
2010 Moustafa A, Evans AN, Kulis DM, Hackett JD, Erdner DL, Anderson DM, Bhattacharya D. Transcriptome profiling of a toxic dinoflagellate reveals a gene-rich protist and a potential impact on gene expression due to bacterial presence. Plos One. 5: e9688. PMID 20300646 DOI: 10.1371/journal.pone.0009688  0.56
2010 Reyes-Prieto A, Yoon HS, Moustafa A, Yang EC, Andersen RA, Boo SM, Nakayama T, Ishida K, Bhattacharya D. Differential gene retention in plastids of common recent origin. Molecular Biology and Evolution. 27: 1530-7. PMID 20123796 DOI: 10.1093/molbev/msq032  0.56
2010 Moustafa A, Bhattacharya D, Allen AE. iTree: A high-throughput phylogenomic pipeline 2010 5th Cairo International Biomedical Engineering Conference, Cibec 2010. 103-107. DOI: 10.1109/CIBEC.2010.5716071  0.56
2010 Reyes-Prieto A, Yoon HS, Bhattacharya D. Marine Algal Genomics and Evolution Encyclopedia of Ocean Sciences. 552-559. DOI: 10.1016/B978-012374473-9.00779-7  0.56
2009 Rumpho ME, Pochareddy S, Worful JM, Summer EJ, Bhattacharya D, Pelletreau KN, Tyler MS, Lee J, Manhart JR, Soule KM. Molecular characterization of the Calvin cycle enzyme phosphoribulokinase in the stramenopile alga Vaucheria litorea and the plastid hosting mollusc Elysia chlorotica. Molecular Plant. 2: 1384-96. PMID 19995736 DOI: 10.1093/mp/ssp085  0.56
2009 Borchert GM, Gilmore BL, Spengler RM, Xing Y, Lanier W, Bhattacharya D, Davidson BL. Adenosine deamination in human transcripts generates novel microRNA binding sites. Human Molecular Genetics. 18: 4801-7. PMID 19776031 DOI: 10.1093/hmg/ddp443  0.56
2009 Moustafa A, Beszteri B, Maier UG, Bowler C, Valentin K, Bhattacharya D. Genomic footprints of a cryptic plastid endosymbiosis in diatoms. Science (New York, N.Y.). 324: 1724-6. PMID 19556510 DOI: 10.1126/science.1172983  0.56
2009 Moustafa A, Loram JE, Hackett JD, Anderson DM, Plumley FG, Bhattacharya D. Origin of saxitoxin biosynthetic genes in cyanobacteria. Plos One. 4: e5758. PMID 19484122 DOI: 10.1371/journal.pone.0005758  0.56
2009 Yoon HS, Nakayama T, Reyes-Prieto A, Andersen RA, Boo SM, Ishida K, Bhattacharya D. A single origin of the photosynthetic organelle in different Paulinella lineages. Bmc Evolutionary Biology. 9: 98. PMID 19439085 DOI: 10.1186/1471-2148-9-98  0.56
2009 Reeb VC, Peglar MT, Yoon HS, Bai JR, Wu M, Shiu P, Grafenberg JL, Reyes-Prieto A, Rümmele SE, Gross J, Bhattacharya D. Interrelationships of chromalveolates within a broadly sampled tree of photosynthetic protists. Molecular Phylogenetics and Evolution. 53: 202-11. PMID 19398025 DOI: 10.1016/j.ympev.2009.04.012  0.56
2009 Worden AZ, Lee JH, Mock T, Rouzé P, Simmons MP, Aerts AL, Allen AE, Cuvelier ML, Derelle E, Everett MV, Foulon E, Grimwood J, Gundlach H, Henrissat B, Napoli C, ... ... Bhattacharya D, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science (New York, N.Y.). 324: 268-72. PMID 19359590 DOI: 10.1126/science.1167222  0.56
2009 Soares MB, de Fatima Bonaldo M, Hackett JD, Bhattacharya D. Expressed sequence tags: normalization and subtraction of cDNA libraries expressed sequence tags\ normalization and subtraction of cDNA libraries. Methods in Molecular Biology (Clifton, N.J.). 533: 109-22. PMID 19277560 DOI: 10.1007/978-1-60327-136-3_6  0.56
2009 Wu M, Comeron JM, Yoon HS, Bhattacharya D. Unexpected dynamic gene family evolution in algal actins. Molecular Biology and Evolution. 26: 249-53. PMID 19008527 DOI: 10.1093/molbev/msn263  0.56
2009 Van Dolah FM, Lidie KB, Monroe EA, Bhattacharya D, Campbell L, Doucette GJ, Kamykowski D. The Florida red tide dinoflagellate Karenia brevis: New insights into cellular and molecular processes underlying bloom dynamics Harmful Algae. 8: 562-572. DOI: 10.1016/j.hal.2008.11.004  0.56
2008 Phillips N, Calhoun S, Moustafa A, Bhattacharya D, Braun EL. GENOMIC INSIGHTS INTO EVOLUTIONARY RELATIONSHIPS AMONG HETEROKONT LINEAGES EMPHASIZING THE PHAEOPHYCEAE(1). Journal of Phycology. 44: 15-8. PMID 27041034 DOI: 10.1111/j.1529-8817.2007.00435.x  0.56
2008 Bhattacharya D, Nosenko T. ENDOSYMBIOTIC AND HORIZONTAL GENE TRANSFER IN CHROMALVEOLATES(1). Journal of Phycology. 44: 7-10. PMID 27041032 DOI: 10.1111/j.1529-8817.2007.00433.x  1
2008 Moustafa A, Chan CX, Danforth M, Zear D, Ahmed H, Jadhav N, Savage T, Bhattacharya D. A phylogenomic approach for studying plastid endosymbiosis. Genome Informatics. International Conference On Genome Informatics. 21: 165-76. PMID 19425156  0.56
2008 Rumpho ME, Worful JM, Lee J, Kannan K, Tyler MS, Bhattacharya D, Moustafa A, Manhart JR. Horizontal gene transfer of the algal nuclear gene psbO to the photosynthetic sea slug Elysia chlorotica. Proceedings of the National Academy of Sciences of the United States of America. 105: 17867-71. PMID 19004808 DOI: 10.1073/pnas.0804968105  0.56
2008 Lanier W, Moustafa A, Bhattacharya D, Comeron JM. EST analysis of Ostreococcus lucimarinus, the most compact eukaryotic genome, shows an excess of introns in highly expressed genes. Plos One. 3: e2171. PMID 18478122 DOI: 10.1371/journal.pone.0002171  0.56
2008 Yoon HS, Grant J, Tekle YI, Wu M, Chaon BC, Cole JC, Logsdon JM, Patterson DJ, Bhattacharya D, Katz LA. Broadly sampled multigene trees of eukaryotes. Bmc Evolutionary Biology. 8: 14. PMID 18205932 DOI: 10.1186/1471-2148-8-14  0.56
2008 Zhang H, Bhattacharya D, Maranda L, Lin S. Mitochondrial cob and cox1 genes and editing of the corresponding mRNAs in Dinophysis acuminata from Narragansett Bay, with special reference to the phylogenetic position of the genus Dinophysis. Applied and Environmental Microbiology. 74: 1546-54. PMID 18165361 DOI: 10.1128/AEM.02103-07  0.56
2007 Bhattacharya D, Archibald JM, Weber AP, Reyes-Prieto A. How do endosymbionts become organelles? Understanding early events in plastid evolution. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 29: 1239-46. PMID 18027391 DOI: 10.1002/bies.20671  0.56
2007 Nosenko T, Bhattacharya D. Horizontal gene transfer in chromalveolates. Bmc Evolutionary Biology. 7: 173. PMID 17894863 DOI: 10.1186/1471-2148-7-173  1
2007 Haugen P, Bhattacharya D, Palmer JD, Turner S, Lewis LA, Pryer KM. Cyanobacterial ribosomal RNA genes with multiple, endonuclease-encoding group I introns. Bmc Evolutionary Biology. 7: 159. PMID 17825109 DOI: 10.1186/1471-2148-7-159  0.56
2007 Hackett JD, Yoon HS, Li S, Reyes-Prieto A, Rümmele SE, Bhattacharya D. Phylogenomic analysis supports the monophyly of cryptophytes and haptophytes and the association of rhizaria with chromalveolates. Molecular Biology and Evolution. 24: 1702-13. PMID 17488740 DOI: 10.1093/molbev/msm089  0.56
2007 Reeb V, Haugen P, Bhattacharya D, Lutzoni F. Evolution of Pleopsidium (lichenized Ascomycota) S943 group I introns and the phylogeography of an intron-encoded putative homing endonuclease. Journal of Molecular Evolution. 64: 285-98. PMID 17294323 DOI: 10.1007/s00239-005-0179-z  0.56
2007 Hackett JD, Su Yoon H, Butterfield NJ, Sanderson MJ, Bhattacharya D. Plastid Endosymbiosis. Sources and Timing of the Major Events. Evolution of Primary Producers in the Sea. 109-132. DOI: 10.1016/B978-012370518-1/50008-4  0.56
2006 Parfrey LW, Barbero E, Lasser E, Dunthorn M, Bhattacharya D, Patterson DJ, Katz LA. Evaluating support for the current classification of eukaryotic diversity. Plos Genetics. 2: e220. PMID 17194223 DOI: 10.1371/journal.pgen.0020220  0.56
2006 Reyes-Prieto A, Hackett JD, Soares MB, Bonaldo MF, Bhattacharya D. Cyanobacterial contribution to algal nuclear genomes is primarily limited to plastid functions. Current Biology : Cb. 16: 2320-5. PMID 17141613 DOI: 10.1016/j.cub.2006.09.063  0.56
2006 Yoon HS, Ciniglia C, Wu M, Comeron JM, Pinto G, Pollio A, Bhattacharya D. Establishment of endolithic populations of extremophilic Cyanidiales (Rhodophyta). Bmc Evolutionary Biology. 6: 78. PMID 17022817 DOI: 10.1186/1471-2148-6-78  0.56
2006 Nosenko T, Lidie KL, Van Dolah FM, Lindquist E, Cheng JF, Bhattacharya D. Chimeric plastid proteome in the Florida "red tide" dinoflagellate Karenia brevis. Molecular Biology and Evolution. 23: 2026-38. PMID 16877498 DOI: 10.1093/molbev/msl074  1
2006 Li S, Nosenko T, Hackett JD, Bhattacharya D. Phylogenomic analysis identifies red algal genes of endosymbiotic origin in the chromalveolates. Molecular Biology and Evolution. 23: 663-74. PMID 16357039 DOI: 10.1093/molbev/msj075  0.56
2006 Bhattacharya D, Archibald JM. Response to Theissen and Martin Current Biology. 16: R1017-R1018. DOI: 10.1016/j.cub.2006.11.021  0.56
2006 Yoon HS, Hackett JD, Bhattacharya D. A genomic and phylogenetic perspective on endosymbiosis and algal origin Journal of Applied Phycology. 18: 475-481. DOI: 10.1007/s10811-006-9054-6  0.56
2005 Bhattacharya D, Reeb V, Simon DM, Lutzoni F. Phylogenetic analyses suggest reverse splicing spread of group I introns in fungal ribosomal DNA. Bmc Evolutionary Biology. 5: 68. PMID 16300679 DOI: 10.1186/1471-2148-5-68  0.56
2005 Hackett JD, Scheetz TE, Yoon HS, Soares MB, Bonaldo MF, Casavant TL, Bhattacharya D. Insights into a dinoflagellate genome through expressed sequence tag analysis. Bmc Genomics. 6: 80. PMID 15921535 DOI: 10.1186/1471-2164-6-80  0.56
2005 Simon DM, Hummel CL, Sheeley SL, Bhattacharya D. Heterogeneity of intron presence or absence in rDNA genes of the lichen species Physcia aipolia and P. stellaris. Current Genetics. 47: 389-99. PMID 15868149 DOI: 10.1007/s00294-005-0581-5  0.56
2005 Bhattacharya D, Katz LA. Frontiers in genomics: insights into protist evolutionary biology, University of Iowa, May 19-21, 2004. The Journal of Eukaryotic Microbiology. 52: 170-2. PMID 15817122 DOI: 10.1111/j.1550-7408.2005.05-3355.x  0.56
2005 Yoon HS, Hackett JD, Van Dolah FM, Nosenko T, Lidie KL, Bhattacharya D. Tertiary endosymbiosis driven genome evolution in dinoflagellate algae. Molecular Biology and Evolution. 22: 1299-308. PMID 15746017 DOI: 10.1093/molbev/msi118  0.56
2005 Haugen P, Simon DM, Bhattacharya D. The natural history of group I introns. Trends in Genetics : Tig. 21: 111-9. PMID 15661357 DOI: 10.1016/j.tig.2004.12.007  0.56
2004 Hagopian JC, Reis M, Kitajima JP, Bhattacharya D, de Oliveira MC. Comparative analysis of the complete plastid genome sequence of the red alga Gracilaria tenuistipitata var. liui provides insights into the evolution of rhodoplasts and their relationship to other plastids. Journal of Molecular Evolution. 59: 464-77. PMID 15638458 DOI: 10.1007/s00239-004-2638-3  0.56
2004 Yoon HS, Hackett JD, Ciniglia C, Pinto G, Bhattacharya D. A molecular timeline for the origin of photosynthetic eukaryotes. Molecular Biology and Evolution. 21: 809-18. PMID 14963099 DOI: 10.1093/molbev/msh075  0.56
2004 Hackett JD, Yoon HS, Soares MB, Bonaldo MF, Casavant TL, Scheetz TE, Nosenko T, Bhattacharya D. Migration of the plastid genome to the nucleus in a peridinin dinoflagellate. Current Biology : Cb. 14: 213-8. PMID 14761653 DOI: 10.1016/j.cub.2004.01.032  0.56
2004 Bhattacharya D, Yoon HS, Hackett JD. Photosynthetic eukaryotes unite: endosymbiosis connects the dots. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 26: 50-60. PMID 14696040 DOI: 10.1002/bies.10376  0.56
2004 Haugen P, Reeb V, Lutzoni F, Bhattacharya D. The evolution of homing endonuclease genes and group I introns in nuclear rDNA. Molecular Biology and Evolution. 21: 129-40. PMID 14595099 DOI: 10.1093/molbev/msh005  0.56
2003 Hackett JD, Maranda L, Yoon HS, Bhattacharya D. Phylogenetic evidence for the cryptophyte origin of the plastid of Dinophysis (Dinophysiales, Dinophyceae) Journal of Phycology. 39: 440-448.  0.56
2002 Hartmann S, Nason JD, Bhattacharya D. Phylogenetic origins of Lophocereus (Cactaceae) and the senita cactus-senita moth pollination mutualism. American Journal of Botany. 89: 1085-92. PMID 21665708 DOI: 10.3732/ajb.89.7.1085  0.56
2002 Yoon HS, Hackett JD, Pinto G, Bhattacharya D. The single, ancient origin of chromist plastids. Proceedings of the National Academy of Sciences of the United States of America. 99: 15507-12. PMID 12438651 DOI: 10.1073/pnas.242379899  0.56
2002 Yoon HS, Hackett JD, Bhattacharya D. A single origin of the peridinin- and fucoxanthin-containing plastids in dinoflagellates through tertiary endosymbiosis. Proceedings of the National Academy of Sciences of the United States of America. 99: 11724-9. PMID 12172008 DOI: 10.1073/pnas.172234799  0.56
2001 Yoon HS, Lee JY, Boo SM, Bhattacharya D. Phylogeny of Alariaceae, Laminariaceae, and Lessoniaceae (Phaeophyceae) based on plastid-encoded RuBisCo spacer and nuclear-encoded ITS sequence comparisons Molecular Phylogenetics and Evolution. 21: 231-243. PMID 11697918 DOI: 10.1006/mpev.2001.1009  0.56
2001 Hartmann S, Nason JD, Bhattacharya D. Extensive ribosomal DNA genic variation in the columnar cactus Lophocereus. Journal of Molecular Evolution. 53: 124-34. PMID 11479683 DOI: 10.1007/s002390010200  0.56
2000 Bhattacharya D, Oliveira MC. The ssu rDNA coding region of a filose amoeba contains a group I intron lacking the universally conserved g at the 3'-terminus Journal of Eukaryotic Microbiology. 47: 585-589. PMID 11128712 DOI: 10.1111/j.1550-7408.2000.tb00094.x  0.56
2000 Bhattacharya D, Lutzoni F, Reeb V, Simon D, Nason J, Fernandez F. Widespread occurrence of spliceosomal introns in the rDNA genes of ascomycetes. Molecular Biology and Evolution. 17: 1971-84. PMID 11110913 DOI: 10.1093/oxfordjournals.molbev.a026298  0.56
2000 Karabinos A, Bhattacharya D. Molecular evolution of calmodulin and calmodulin-like genes in the cephalochordate Branchiostoma Journal of Molecular Evolution. 51: 141-148. PMID 10948270 DOI: 10.1007/s002390010074  0.56
2000 Besendahl A, Qiu YL, Lee J, Palmer JD, Bhattacharya D. The cyanobacterial origin and vertical transmission of the plastid tRNA(Leu) group-I intron Current Genetics. 37: 12-23. PMID 10672439 DOI: 10.1007/s002940050002  0.56
1998 Bhattacharya D, Weber K, An SS, Berning-Koch W. Actin phylogeny identifies Mesostigma viride as a flagellate ancestor of the land plants Journal of Molecular Evolution. 47: 544-550. PMID 9797404 DOI: 10.1007/PL00006410  0.56
1997 Bhattacharya D, Weber K. The actin gene of the glaucocystophyte Cyanophora paradoxa: Analysis of the coding region and introns, and an actin phylogeny of eukaryotes Current Genetics. 31: 439-446. PMID 9162116 DOI: 10.1007/s002940050227  0.56
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