Rebecca E. Parales - Publications

Affiliations: 
Microbiology University of California, Davis, Davis, CA 
Area:
Microbiology Biology, Physiology Biology, Molecular Biology

49 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Parales RE, Sharma G, Zhang X, Subuyuj GA, Langner JT, Wright ME, Ditty JL, Dawson SC. Draft Genome Sequence of the Caffeine-Degrading Methylotroph Pinkel. Microbiology Resource Announcements. 8. PMID 31753954 DOI: 10.1128/MRA.01300-19  1
2019 Luu RA, Schomer RA, Brunton CN, Truong R, Ta AP, Tan WA, Parales JV, Wang YJ, Huo YW, Liu SJ, Ditty JL, Stewart V, Parales RE. Hybrid Two-Component Sensors for Identification of Bacterial Chemoreceptor Function. Applied and Environmental Microbiology. PMID 31492670 DOI: 10.1128/AEM.01626-19  1
2019 Zhang X, Hughes JG, Subuyuj GA, Ditty JL, Parales RE. Chemotaxis of F1 to Alcohols is Mediated by the Carboxylic Acid Receptor McfP. Applied and Environmental Microbiology. PMID 31471307 DOI: 10.1128/AEM.01625-19  1
2018 Valderrama-Gómez MA, Parales RE, Savageaua MA. Phenotype-centric modeling for elucidation of biological design principles. Journal of Theoretical Biology. PMID 30036529 DOI: 10.1016/j.jtbi.2018.07.009  1
2018 Valderrama-Gómez MA, Parales RE, Savageau MA. Phenotype-centric modeling for elucidation of biological design principles. J Theor Biol.. 455: 281-292. PMID 30036529  0.01
2018 Parales RE, Ditty JL. Chemotaxis to Atypical Chemoattractants by Soil Bacteria. Methods in Molecular Biology (Clifton, N.J.). 1729: 255-280. PMID 29429097 DOI: 10.1007/978-1-4939-7577-8_21  1
2017 Parales RE, Navara R, Gettys R, Huang JJ. Genome Sequence of Pseudomonas putida Strain ASAD, an Acetylsalicylic Acid-Degrading Bacterium. Genome Announcements. 5. PMID 29025955 DOI: 10.1128/genomeA.01169-17  1
2017 Parales RE, Navara R, Gettys R, Huang JJ. Genome Sequence of Pseudomonas putida Strain ASAD, an Acetylsalicylic Acid-Degrading Bacterium Genome Announc. 12: 41. PMID 29025955  0.08
2017 Hughes JG, Zhang X, Parales JV, Ditty JL, Parales RE. Pseudomonas putida F1 uses energy taxis to sense hydroxycinnamic acids. Microbiology (Reading, England). PMID 28954643 DOI: 10.1099/mic.0.000533  1
2016 Huang Z, Ni B, Jiang CY, Wu YF, He YZ, Parales RE, Liu SJ. Direct sensing and signal transduction during bacterial chemotaxis towards aromatic compounds in Comamonas testosteroni. Molecular Microbiology. PMID 27008921 DOI: 10.1111/mmi.13385  0.48
2016 Pati S, Kohler HE, Pabis A, Paneth P, Parales R, Hofstetter TB. Substrate and Enzyme Specificity of the Kinetic Isotope Effects Associated with the Dioxygenation of Nitroaromatic Contaminants. Environmental Science & Technology. PMID 26895026 DOI: 10.1021/acs.est.5b05084  1
2015 Timm CM, Campbell AG, Utturkar SM, Jun SR, Parales RE, Tan WA, Robeson MS, Lu TY, Jawdy S, Brown SD, Ussery DW, Schadt CW, Tuskan GA, Doktycz MJ, Weston DJ, et al. Metabolic functions of Pseudomonas fluorescens strains from Populus deltoides depend on rhizosphere or endosphere isolation compartment. Frontiers in Microbiology. 6: 1118. PMID 26528266 DOI: 10.3389/fmicb.2015.01118  1
2015 Parales RE, Luu RA, Hughes JG, Ditty JL. Bacterial chemotaxis to xenobiotic chemicals and naturally-occurring analogs. Current Opinion in Biotechnology. 33: 318-26. PMID 25889452 DOI: 10.1016/j.copbio.2015.03.017  1
2015 Luu RA, Kootstra JD, Nesteryuk V, Brunton CN, Parales JV, Ditty JL, Parales RE. Integration of chemotaxis, transport and catabolism in Pseudomonas putida and identification of the aromatic acid chemoreceptor PcaY. Molecular Microbiology. 96: 134-47. PMID 25582673 DOI: 10.1111/mmi.12929  1
2015 Mahan KM, Penrod JT, Ju KS, Al Kass N, Tan WA, Truong R, Parales JV, Parales RE. Selection for growth on 3-nitrotoluene by 2-nitrotoluene-utilizing Acidovorax sp. strain JS42 identifies nitroarene dioxygenases with altered specificities. Applied and Environmental Microbiology. 81: 309-19. PMID 25344236 DOI: 10.1128/AEM.02772-14  1
2015 Sampedro I, Parales RE, Krell T, Hill JE. Pseudomonas chemotaxis. Fems Microbiology Reviews. 39: 17-46. PMID 25100612 DOI: 10.1111/1574-6976.12081  1
2014 Harwood CS, Parales RE. David T. Gibson: from biodegradation to biocatalysis. Proceedings of the National Academy of Sciences of the United States of America. 111: 16980-1. PMID 25422435 DOI: 10.1073/pnas.1420371111  1
2014 Parales RE, Nesteryuk V, Hughes JG, Luu RA, Ditty JL. Cytosine chemoreceptor McpC in Pseudomonas putida F1 also detects nicotinic acid. Microbiology (Reading, England). 160: 2661-9. PMID 25294107 DOI: 10.1099/mic.0.081968-0  1
2014 Pati SG, Kohler HP, Bolotin J, Parales RE, Hofstetter TB. Isotope effects of enzymatic dioxygenation of nitrobenzene and 2-nitrotoluene by nitrobenzene dioxygenase. Environmental Science & Technology. 48: 10750-9. PMID 25101486 DOI: 10.1021/es5028844  1
2013 Sales CM, Grostern A, Parales JV, Parales RE, Alvarez-Cohen L. Oxidation of the cyclic ethers 1,4-dioxane and tetrahydrofuran by a monooxygenase in two Pseudonocardia species. Applied and Environmental Microbiology. 79: 7702-8. PMID 24096414 DOI: 10.1128/AEM.02418-13  1
2013 Parales RE, Luu RA, Chen GY, Liu X, Wu V, Lin P, Hughes JG, Nesteryuk V, Parales JV, Ditty JL. Pseudomonas putida F1 has multiple chemoreceptors with overlapping specificity for organic acids. Microbiology (Reading, England). 159: 1086-96. PMID 23618999 DOI: 10.1099/mic.0.065698-0  1
2013 Ditty JL, Williams KM, Keller MM, Chen GY, Liu X, Parales RE. Integrating grant-funded research into the undergraduate biology curriculum using IMG-ACT. Biochemistry and Molecular Biology Education : a Bimonthly Publication of the International Union of Biochemistry and Molecular Biology. 41: 16-23. PMID 23382122 DOI: 10.1002/bmb.20662  1
2013 Luu RA, Schneider BJ, Ho CC, Nesteryuk V, Ngwesse SE, Liu X, Parales JV, Ditty JL, Parales RE. Taxis of Pseudomonas putida F1 toward phenylacetic acid is mediated by the energy taxis receptor Aer2. Applied and Environmental Microbiology. 79: 2416-23. PMID 23377939 DOI: 10.1128/AEM.03895-12  1
2011 Ju KS, Parales RE. Evolution of a new bacterial pathway for 4-nitrotoluene degradation. Molecular Microbiology. 82: 355-64. PMID 21895789 DOI: 10.1111/j.1365-2958.2011.07817.x  1
2011 Sales CM, Mahendra S, Grostern A, Parales RE, Goodwin LA, Woyke T, Nolan M, Lapidus A, Chertkov O, Ovchinnikova G, Sczyrba A, Alvarez-Cohen L. Genome sequence of the 1,4-dioxane-degrading Pseudonocardia dioxanivorans strain CB1190. Journal of Bacteriology. 193: 4549-50. PMID 21725009 DOI: 10.1128/JB.00415-11  1
2011 Joh LD, Rezaei F, Barabote RD, Parales JV, Parales RE, Berry AM, Vandergheynst JS. Effects of phenolic monomers on growth of Acidothermus cellulolyticus. Biotechnology Progress. 27: 23-31. PMID 21312351 DOI: 10.1002/btpr.525  1
2010 Barabote RD, Parales JV, Guo YY, Labavitch JM, Parales RE, Berry AM. Xyn10A, a thermostable endoxylanase from Acidothermus cellulolyticus 11B. Applied and Environmental Microbiology. 76: 7363-6. PMID 20851989 DOI: 10.1128/AEM.01326-10  1
2010 Parales RE, Ingraham JL. The surprising Rut pathway: an unexpected way to derive nitrogen from pyrimidines. Journal of Bacteriology. 192: 4086-8. PMID 20562306 DOI: 10.1128/JB.00573-10  1
2010 Ju KS, Parales RE. Nitroaromatic compounds, from synthesis to biodegradation. Microbiology and Molecular Biology Reviews : Mmbr. 74: 250-72. PMID 20508249 DOI: 10.1128/MMBR.00006-10  1
2010 Lacal J, Alfonso C, Liu X, Parales RE, Morel B, Conejero-Lara F, Rivas G, Duque E, Ramos JL, Krell T. Identification of a chemoreceptor for tricarboxylic acid cycle intermediates: differential chemotactic response towards receptor ligands. The Journal of Biological Chemistry. 285: 23126-36. PMID 20498372 DOI: 10.1074/jbc.M110.110403  1
2009 Ju KS, Parales RE. Application of nitroarene dioxygenases in the design of novel strains that degrade chloronitrobenzenes. Microbial Biotechnology. 2: 241-52. PMID 21261918 DOI: 10.1111/j.1751-7915.2008.00083.x  1
2009 Ju KS, Parales JV, Parales RE. Reconstructing the evolutionary history of nitrotoluene detection in the transcriptional regulator NtdR. Molecular Microbiology. 74: 826-43. PMID 19849778 DOI: 10.1111/j.1365-2958.2009.06904.x  1
2009 Liu X, Parales RE. Bacterial chemotaxis to atrazine and related s-triazines. Applied and Environmental Microbiology. 75: 5481-8. PMID 19581468 DOI: 10.1128/AEM.01030-09  1
2009 Barabote RD, Xie G, Leu DH, Normand P, Necsulea A, Daubin V, Médigue C, Adney WS, Xu XC, Lapidus A, Parales RE, Detter C, Pujic P, Bruce D, Lavire C, et al. Complete genome of the cellulolytic thermophile Acidothermus cellulolyticus 11B provides insights into its ecophysiological and evolutionary adaptations. Genome Research. 19: 1033-43. PMID 19270083 DOI: 10.1101/gr.084848.108  1
2009 Liu X, Wood PL, Parales JV, Parales RE. Chemotaxis to pyrimidines and identification of a cytosine chemoreceptor in Pseudomonas putida. Journal of Bacteriology. 191: 2909-16. PMID 19251854 DOI: 10.1128/JB.01708-08  1
2008 Sarand I, Osterberg S, Holmqvist S, Holmfeldt P, Skärfstad E, Parales RE, Shingler V. Metabolism-dependent taxis towards (methyl)phenols is coupled through the most abundant of three polar localized Aer-like proteins of Pseudomonas putida. Environmental Microbiology. 10: 1320-34. PMID 18279347 DOI: 10.1111/j.1462-2920.2007.01546.x  1
2008 Liu X, Parales RE. Chemotaxis of Escherichia coli to pyrimidines: a new role for the signal transducer tap. Journal of Bacteriology. 190: 972-9. PMID 18065551 DOI: 10.1128/JB.01590-07  1
2007 Ferraro DJ, Brown EN, Yu CL, Parales RE, Gibson DT, Ramaswamy S. Structural investigations of the ferredoxin and terminal oxygenase components of the biphenyl 2,3-dioxygenase from Sphingobium yanoikuyae B1. Bmc Structural Biology. 7: 10. PMID 17349044 DOI: 10.1186/1472-6807-7-10  1
2007 He Z, Parales RE, Spain JC, Johnson GR. Novel organization of catechol meta pathway genes in the nitrobenzene degrader Comamonas sp. JS765 and its evolutionary implication. Journal of Industrial Microbiology & Biotechnology. 34: 99-104. PMID 16947040 DOI: 10.1007/s10295-006-0170-8  1
2006 Ju KS, Parales RE. Control of substrate specificity by active-site residues in nitrobenzene dioxygenase. Applied and Environmental Microbiology. 72: 1817-24. PMID 16517627 DOI: 10.1128/AEM.72.3.1817-1824.2006  1
2005 Lee KS, Parales JV, Friemann R, Parales RE. Active site residues controlling substrate specificity in 2-nitrotoluene dioxygenase from Acidovorax sp. strain JS42. Journal of Industrial Microbiology & Biotechnology. 32: 465-73. PMID 16175409 DOI: 10.1007/s10295-005-0021-z  1
2005 Parales RE, Ditty JL. Laboratory evolution of catabolic enzymes and pathways. Current Opinion in Biotechnology. 16: 315-25. PMID 15961033 DOI: 10.1016/j.copbio.2005.03.008  1
2005 Karlsson A, Parales JV, Parales RE, Gibson DT, Eklund H, Ramaswamy S. NO binding to naphthalene dioxygenase. Journal of Biological Inorganic Chemistry : Jbic : a Publication of the Society of Biological Inorganic Chemistry. 10: 483-9. PMID 15942729 DOI: 10.1007/s00775-005-0657-1  1
2005 Friemann R, Ivkovic-Jensen MM, Lessner DJ, Yu CL, Gibson DT, Parales RE, Eklund H, Ramaswamy S. Structural insight into the dioxygenation of nitroarene compounds: the crystal structure of nitrobenzene dioxygenase. Journal of Molecular Biology. 348: 1139-51. PMID 15854650 DOI: 10.1016/j.jmb.2005.03.052  1
2004 Parales RE, Haddock JD. Biocatalytic degradation of pollutants. Current Opinion in Biotechnology. 15: 374-9. PMID 15296933 DOI: 10.1016/j.copbio.2004.06.003  1
2003 Lessner DJ, Parales RE, Narayan S, Gibson DT. Expression of the nitroarene dioxygenase genes in Comamonas sp. strain JS765 and Acidovorax sp. strain JS42 is induced by multiple aromatic compounds. Journal of Bacteriology. 185: 3895-904. PMID 12813084 DOI: 10.1128/JB.185.13.3895-3904.2003  1
2003 Karlsson A, Parales JV, Parales RE, Gibson DT, Eklund H, Ramaswamy S. Crystal structure of naphthalene dioxygenase: side-on binding of dioxygen to iron. Science (New York, N.Y.). 299: 1039-42. PMID 12586937 DOI: 10.1126/science.1078020  1
2002 Parales RE, Harwood CS. Bacterial chemotaxis to pollutants and plant-derived aromatic molecules. Current Opinion in Microbiology. 5: 266-73. PMID 12057680 DOI: 10.1016/S1369-5274(02)00320-X  1
2002 Lessner DJ, Johnson GR, Parales RE, Spain JC, Gibson DT. Molecular characterization and substrate specificity of nitrobenzene dioxygenase from Comamonas sp. strain JS765. Applied and Environmental Microbiology. 68: 634-41. PMID 11823201 DOI: 10.1128/AEM.68.2.634-641.2002  1
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