Ioannis Vakonakis, Ph.D. - Publications

Affiliations: 
2004 Texas A & M University, College Station, TX, United States 
Area:
Biochemistry

45 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Vakonakis I. The centriolar cartwheel structure: symmetric, stacked, and polarized. Current Opinion in Structural Biology. 66: 1-7. PMID 32956907 DOI: 10.1016/J.Sbi.2020.08.007  0.356
2020 Busch JMC, Matsoukas MT, Musgaard M, Spyroulias GA, Biggin PC, Vakonakis I. Identification of compounds that bind the centriolar protein SAS-6 and inhibit its oligomerisation. The Journal of Biological Chemistry. PMID 32873708 DOI: 10.1074/Jbc.Ra120.014780  0.469
2019 Busch JMC, Erat MC, Blank ID, Musgaard M, Biggin PC, Vakonakis I. A dynamically interacting flexible loop assists oligomerisation of the Caenorhabditis elegans centriolar protein SAS-6. Scientific Reports. 9: 3526. PMID 30837637 DOI: 10.1038/S41598-019-40294-2  0.478
2019 Vakonakis I, Day J. Sequence-specific assignments of the P. falciparum PFE0660w J-domain Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr27952  0.332
2019 Erat M, Vakonakis I. Sequence specific chemical shift assignments of the Caenorhabditis elegans SAS-6 N-terminal domain Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr27607  0.407
2018 Bianchi S, Rogala KB, Dynes NJ, Hilbert M, Leidel SA, Steinmetz MO, Gönczy P, Vakonakis I. Interaction between the C. elegans centriolar protein SAS-5 and microtubules facilitates organelle assembly. Molecular Biology of the Cell. PMID 29367435 DOI: 10.1091/Mbc.E17-06-0412  0.759
2018 Rogala K, Vakonakis I. C. elegans SAS-5 N-term backbone assignments Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr27056  0.723
2017 Cutts EE, Laasch N, Reiter DM, Trenker R, Slater LM, Stansfeld PJ, Vakonakis I. Structural analysis of P. falciparum KAHRP and PfEMP1 complexes with host erythrocyte spectrin suggests a model for cytoadherent knob protrusions. Plos Pathogens. 13: e1006552. PMID 28806784 DOI: 10.1371/Journal.Ppat.1006552  0.412
2017 Ford JE, Stansfeld PJ, Vakonakis I. Coupling Form and Function: How the Oligomerisation Symmetry of the SAS-6 Protein Contributes to the Architecture of Centriole Organelles Symmetry. 9: 74. DOI: 10.3390/Sym9050074  0.406
2016 Warncke JD, Vakonakis I, Beck HP. Plasmodium Helical Interspersed Subtelomeric (PHIST) Proteins, at the Center of Host Cell Remodeling. Microbiology and Molecular Biology Reviews : Mmbr. 80: 905-27. PMID 27582258 DOI: 10.1128/Mmbr.00014-16  0.35
2016 Oberli A, Zurbrügg L, Rusch S, Brand F, Butler ME, Day JL, Cutts EE, Lavstsen T, Vakonakis I, Beck HP. Plasmodium falciparum PHIST Proteins Contribute to Cytoadherence and Anchor PfEMP1 to the Host Cell Cytoskeleton. Cellular Microbiology. PMID 26916885 DOI: 10.1111/Cmi.12583  0.349
2016 Watermeyer JM, Hale VL, Hackett F, Clare DK, Cutts EE, Vakonakis I, Fleck RA, Blackman MJ, Saibil HR. A spiral scaffold underlies cytoadherent knobs in Plasmodium falciparum-infected erythrocytes. Blood. 127: 343-51. PMID 26637786 DOI: 10.1182/Blood-2015-10-674002  0.302
2015 Cutts EE, Inglis A, Stansfeld PJ, Vakonakis I, Hatzopoulos GN. The centriolar protein CPAP G-box: an amyloid fibril in a single domain. Biochemical Society Transactions. 43: 838-43. PMID 26517891 DOI: 10.1042/Bst20150082  0.424
2015 Rogala KB, Dynes NJ, Hatzopoulos GN, Yan J, Pong SK, Robinson CV, Deane CM, Gönczy P, Vakonakis I. The Caenorhabditis elegans protein SAS-5 forms large oligomeric assemblies critical for centriole formation. Elife. 4. PMID 26023830 DOI: 10.7554/Elife.07410  0.766
2015 Rogala KB, Dynes NJ, Hatzopoulos GN, Yan J, Pong SK, Robinson CV, Deane CM, Gönczy P, Vakonakis I. Author response: The Caenorhabditis elegans protein SAS-5 forms large oligomeric assemblies critical for centriole formation Elife. DOI: 10.7554/Elife.07410.030  0.737
2014 Oberli A, Slater LM, Cutts E, Brand F, Mundwiler-Pachlatko E, Rusch S, Masik MF, Erat MC, Beck HP, Vakonakis I. A Plasmodium falciparum PHIST protein binds the virulence factor PfEMP1 and comigrates to knobs on the host cell surface. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 28: 4420-33. PMID 24983468 DOI: 10.1096/Fj.14-256057  0.357
2013 Hatzopoulos GN, Erat MC, Cutts E, Rogala KB, Slater LM, Stansfeld PJ, Vakonakis I. Structural analysis of the G-box domain of the microcephaly protein CPAP suggests a role in centriole architecture. Structure (London, England : 1993). 21: 2069-77. PMID 24076405 DOI: 10.1016/J.Str.2013.08.019  0.761
2013 Hilbert M, Erat MC, Hachet V, Guichard P, Blank ID, Flückiger I, Slater L, Lowe ED, Hatzopoulos GN, Steinmetz MO, Gönczy P, Vakonakis I. Caenorhabditis elegans centriolar protein SAS-6 forms a spiral that is consistent with imparting a ninefold symmetry. Proceedings of the National Academy of Sciences of the United States of America. 110: 11373-8. PMID 23798409 DOI: 10.1073/Pnas.1302721110  0.405
2013 Bonet R, Vakonakis I, Campbell ID. Characterization of 14-3-3-ζ Interactions with integrin tails. Journal of Molecular Biology. 425: 3060-72. PMID 23763993 DOI: 10.1016/J.Jmb.2013.05.024  0.322
2013 Erat MC, Sladek B, Campbell ID, Vakonakis I. Structural analysis of collagen type I interactions with human fibronectin reveals a cooperative binding mode Journal of Biological Chemistry. 288: 17441-17450. PMID 23653354 DOI: 10.1074/Jbc.M113.469841  0.364
2012 Prömel S, Frickenhaus M, Hughes S, Mestek L, Staunton D, Woollard A, Vakonakis I, Schöneberg T, Schnabel R, Russ AP, Langenhan T. The GPS motif is a molecular switch for bimodal activities of adhesion class G protein-coupled receptors. Cell Reports. 2: 321-31. PMID 22938866 DOI: 10.1016/J.Celrep.2012.06.015  0.353
2012 Mayer C, Slater L, Erat MC, Konrat R, Vakonakis I. Structural analysis of the Plasmodium falciparum erythrocyte membrane protein 1 (PfEMP1) intracellular domain reveals a conserved interaction epitope. The Journal of Biological Chemistry. 287: 7182-9. PMID 22249178 DOI: 10.1074/Jbc.M111.330779  0.429
2011 Kitagawa D, Vakonakis I, Olieric N, Hilbert M, Keller D, Olieric V, Bortfeld M, Erat MC, Flückiger I, Gönczy P, Steinmetz MO. Structural basis of the 9-fold symmetry of centrioles. Cell. 144: 364-75. PMID 21277013 DOI: 10.1016/J.Cell.2011.01.008  0.486
2010 Atkin KE, Brentnall AS, Harris G, Bingham RJ, Erat MC, Millard CJ, Schwarz-Linek U, Staunton D, Vakonakis I, Campbell ID, Potts JR. The streptococcal binding site in the gelatin-binding domain of fibronectin is consistent with a non-linear arrangement of modules Journal of Biological Chemistry. 285: 36977-36983. PMID 20843804 DOI: 10.1074/Jbc.M110.156935  0.362
2010 Erat MC, Schwarz-Linek U, Pickford AR, Farndale RW, Campbell ID, Vakonakis I. Implications for collagen binding from the crystallographic structure of fibronectin 6FnI1-2FnII7FnI Journal of Biological Chemistry. 285: 33764-33770. PMID 20739283 DOI: 10.1074/Jbc.M110.139394  0.394
2009 Anthis NJ, Wegener KL, Ye F, Kim C, Goult BT, Lowe ED, Vakonakis I, Bate N, Critchley DR, Ginsberg MH, Campbell ID. The structure of an integrin/talin complex reveals the basis of inside-out signal transduction Embo Journal. 28: 3623-3632. PMID 19798053 DOI: 10.1038/Emboj.2009.287  0.333
2009 Vakonakis I, Staunton D, Ellis IR, Sarkies P, Flanagan A, Schor AM, Schor SL, Campbell ID. Motogenic sites in human fibronectin are masked by long range interactions. The Journal of Biological Chemistry. 284: 15668-75. PMID 19366708 DOI: 10.1074/Jbc.M109.003673  0.399
2009 Erat MC, Slatter DA, Lowe ED, Millard CJ, Farndale RW, Campbell ID, Vakonakis I. Identification and structural analysis of type i collagen sites in complex with fibronectin fragments Proceedings of the National Academy of Sciences of the United States of America. 106: 4195-4200. PMID 19251642 DOI: 10.1073/Pnas.0812516106  0.382
2008 Lorenz S, Vakonakis I, Lowe ED, Campbell ID, Noble ME, Hoellerer MK. Structural analysis of the interactions between paxillin LD motifs and alpha-parvin. Structure (London, England : 1993). 16: 1521-31. PMID 18940607 DOI: 10.1016/J.Str.2008.08.007  0.398
2008 Vakonakis I, Langenhan T, Prömel S, Russ A, Campbell ID. Solution structure and sugar-binding mechanism of mouse latrophilin-1 RBL: a 7TM receptor-attached lectin-like domain. Structure (London, England : 1993). 16: 944-53. PMID 18547526 DOI: 10.1016/J.Str.2008.02.020  0.437
2008 Oxley CL, Anthis NJ, Lowe ED, Vakonakis I, Campbell ID, Wegener KL. An integrin phosphorylation switch: the effect of beta3 integrin tail phosphorylation on Dok1 and talin binding. The Journal of Biological Chemistry. 283: 5420-6. PMID 18156175 DOI: 10.1074/Jbc.M709435200  0.352
2007 Vakonakis I, Campbell ID. Extracellular matrix: from atomic resolution to ultrastructure. Current Opinion in Cell Biology. 19: 578-83. PMID 17942296 DOI: 10.1016/J.Ceb.2007.09.005  0.309
2007 Vakonakis I, Staunton D, Rooney LM, Campbell ID. Interdomain association in fibronectin: insight into cryptic sites and fibrillogenesis. The Embo Journal. 26: 2575-83. PMID 17464288 DOI: 10.1038/Sj.Emboj.7601694  0.435
2004 Vakonakis I, Klewer DA, Williams SB, Golden SS, LiWang AC. Structure of the N-terminal domain of the circadian clock-associated histidine kinase SasA. Journal of Molecular Biology. 342: 9-17. PMID 15313603 DOI: 10.1016/J.Jmb.2004.07.010  0.702
2004 Vakonakis I, LiWang AC. Structure of the C-terminal domain of the clock protein KaiA in complex with a KaiC-derived peptide: implications for KaiC regulation. Proceedings of the National Academy of Sciences of the United States of America. 101: 10925-30. PMID 15256595 DOI: 10.1073/Pnas.0403037101  0.708
2004 Vakonakis I, LiWang AC. N1...N3 hydrogen bonds of A:U base pairs of RNA are stronger than those of A:T base pairs of DNA. Journal of the American Chemical Society. 126: 5688-9. PMID 15125660 DOI: 10.1021/Ja048981T  0.616
2004 Vakonakis I, LiWang AC. Trans-hydrogen bond deuterium isotope effects of A:T base pairs in DNA. Journal of Biomolecular Nmr. 29: 65-72. PMID 15017140 DOI: 10.1023/B:Jnmr.0000019507.95667.3E  0.631
2004 Ye S, Vakonakis I, Ioerger TR, LiWang AC, Sacchettini JC. Crystal structure of circadian clock protein KaiA from Synechococcus elongatus. The Journal of Biological Chemistry. 279: 20511-8. PMID 15007067 DOI: 10.1074/Jbc.M400077200  0.713
2004 Vakonakis I, LiWang AC. Sequence-specific 1H, 13C and 15N resonance assignments of the C-terminal domain of KaiA, a circadian clock protein. Journal of Biomolecular Nmr. 28: 403-4. PMID 14872133 DOI: 10.1023/B:Jnmr.0000015373.13794.C7  0.697
2004 Vakonakis I, Sun J, Wu T, Holzenburg A, Golden SS, LiWang AC. NMR structure of the KaiC-interacting C-terminal domain of KaiA, a circadian clock protein: implications for KaiA-KaiC interaction. Proceedings of the National Academy of Sciences of the United States of America. 101: 1479-84. PMID 14749515 DOI: 10.1073/Pnas.0305516101  0.716
2004 Vakonakis I, LiWang A. Sequence-specific 1H, 13C and 15N resonance assignments of the C-terminal domain of KaiA, a circadian clock protein (reduced form) Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr5825  0.703
2004 Vakonakis I, LiWang AC. N1···N3 Hydrogen Bonds of A:U Base Pairs of RNA Are Stronger than Those of A:T Base Pairs of DNA [J. Am. Chem. Soc.2004,18, 5688−5689].  Journal of the American Chemical Society. 126: 7152-7152. DOI: 10.1021/Ja0408101  0.565
2003 Vakonakis I, Salazar M, Kang M, Dunbar KR, LiWang AC. Deuterium isotope effects and fractionation factors of hydrogen-bonded A:T base pairs of DNA. Journal of Biomolecular Nmr. 25: 105-12. PMID 12652119 DOI: 10.1023/A:1022211927051  0.637
2002 Williams SB, Vakonakis I, Golden SS, LiWang AC. Structure and function from the circadian clock protein KaiA of Synechococcus elongatus: a potential clock input mechanism. Proceedings of the National Academy of Sciences of the United States of America. 99: 15357-62. PMID 12438647 DOI: 10.1073/Pnas.232517099  0.684
2001 Vakonakis I, Risinger AT, Latham MP, Williams SB, Golden SS, LiWang AC. Sequence-specific 1H, 13C and 15N resonance assignments of the N-terminal, 135-residue domain of KaiA, a clock protein from Synechococcus elongatus. Journal of Biomolecular Nmr. 21: 179-80. PMID 11727983 DOI: 10.1023/A:1012478912174  0.675
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