Jamie Williamson - Publications

Scripps Research Institute, La Jolla, La Jolla, CA, United States 
Molecular Biology, Biochemistry, Microbiology Biology

75 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Rabuck-Gibbons JN, Popova AM, Greene EM, Cervantes CF, Lyumkis D, Williamson JR. SrmB Rescues Trapped Ribosome Assembly Intermediates. Journal of Molecular Biology. PMID 31877323 DOI: 10.1016/J.Jmb.2019.12.013  0.363
2019 Duss O, Stepanyuk GA, Puglisi JD, Williamson JR. Transient Protein-RNA Interactions Guide Nascent Ribosomal RNA Folding. Cell. 179: 1357-1369.e16. PMID 31761533 DOI: 10.1016/J.Bpj.2019.11.1863  0.405
2019 Razi A, Davis JH, Hao Y, Jahagirdar D, Thurlow B, Basu K, Jain N, Gomez-Blanco J, Britton RA, Vargas J, Guarné A, Woodson SA, Williamson JR, Ortega J. Role of Era in assembly and homeostasis of the ribosomal small subunit. Nucleic Acids Research. PMID 31265110 DOI: 10.1093/nar/gkz571  0.44
2018 Duss O, Stepanyuk GA, Grot A, O'Leary SE, Puglisi JD, Williamson JR. Real-time assembly of ribonucleoprotein complexes on nascent RNA transcripts. Nature Communications. 9: 5087. PMID 30504830 DOI: 10.1038/S41467-018-07423-3  0.349
2017 Hammond JA, Zhou L, Lamichhane R, Chu HY, Millar DP, Gerace L, Williamson JR. A Survey of DDX21 Activity during Rev/RRE Complex Formation. Journal of Molecular Biology. PMID 28705764 DOI: 10.1016/J.Jmb.2017.06.023  0.362
2017 Lamichhane R, Hammond JA, Pauszek RF, Anderson RM, Pedron I, van der Schans E, Williamson JR, Millar DP. A DEAD-box protein acts through RNA to promote HIV-1 Rev-RRE assembly. Nucleic Acids Research. PMID 28379444 DOI: 10.1016/J.Bpj.2016.11.436  0.353
2017 Davis JH, Williamson JR. Structure and dynamics of bacterial ribosome biogenesis. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 372. PMID 28138067 DOI: 10.1098/Rstb.2016.0181  0.347
2017 Duss O, O'Leary S, Puglisi J, Williamson J. Co-Transcriptional Ribosome Assembly in Real-Time Biophysical Journal. 112: 178a. DOI: 10.1016/J.Bpj.2016.11.986  0.424
2016 Davis JH, Tan YZ, Carragher B, Potter CS, Lyumkis D, Williamson JR. Modular Assembly of the Bacterial Large Ribosomal Subunit. Cell. 167: 1610-1622.e15. PMID 27912064 DOI: 10.1016/J.Cell.2016.11.020  0.333
2016 Beuck C, Williamson JR, Wüthrich K, Serrano P. The acidic domain is a unique structural feature of the splicing factor SYNCRIP. Protein Science : a Publication of the Protein Society. 25: 1545-50. PMID 27081926 DOI: 10.1002/Pro.2935  0.303
2016 Stepanyuk GA, Serrano P, Peralta E, Farr CL, Axelrod HL, Geralt M, Das D, Chiu HJ, Jaroszewski L, Deacon AM, Lesley SA, Elsliger MA, Godzik A, Wilson IA, Wüthrich K, ... ... Williamson JR, et al. UHM-ULM interactions in the RBM39-U2AF65 splicing-factor complex. Acta Crystallographica. Section D, Structural Biology. 72: 497-511. PMID 27050129 DOI: 10.1107/S2059798316001248  0.416
2016 Lavergne T, Lamichhane R, Malyshev DA, Li Z, Li L, Sperling E, Williamson JR, Millar DP, Romesberg FE. FRET Characterization of Complex Conformational Changes in a Large 16S Ribosomal RNA Fragment Site-Specifically Labeled Using Unnatural Base Pairs. Acs Chemical Biology. PMID 26942998 DOI: 10.1021/Acschembio.5B00952  0.311
2016 Popova A, Williamson J. Functional Profiling of Ribosomal RNA Modifications using Quantitative Mass Spectrometry Biophysical Journal. 110: 352a. DOI: 10.1016/J.Bpj.2015.11.1896  0.305
2015 Williamson JR. Dynamics of Bacterial Ribosome Assembly in Cells Biophysical Journal. 108: 6a. DOI: 10.1016/J.Bpj.2014.11.052  0.344
2014 Sashital DG, Greeman CA, Lyumkis D, Potter CS, Carragher B, Williamson JR. A combined quantitative mass spectrometry and electron microscopy analysis of ribosomal 30S subunit assembly in E. coli. Elife. 3. PMID 25313868 DOI: 10.7554/Elife.04491  0.735
2014 Popova AM, Williamson JR. Quantitative analysis of rRNA modifications using stable isotope labeling and mass spectrometry. Journal of the American Chemical Society. 136: 2058-69. PMID 24422502 DOI: 10.1021/Ja412084B  0.31
2013 Chen SS, Williamson JR. Characterization of the ribosome biogenesis landscape in E. coli using quantitative mass spectrometry. Journal of Molecular Biology. 425: 767-79. PMID 23228329 DOI: 10.1016/J.Jmb.2012.11.040  0.335
2013 Wu J, Campbell ZT, Menichelli E, Wickens M, Williamson JR. A protein.protein interaction platform involved in recruitment of GLD-3 to the FBF.fem-3 mRNA complex. Journal of Molecular Biology. 425: 738-54. PMID 23159559 DOI: 10.1016/J.Jmb.2012.11.013  0.412
2013 Menichelli E, Wu J, Campbell ZT, Wickens M, Williamson JR. Biochemical characterization of the Caenorhabditis elegans FBF.CPB-1 translational regulation complex identifies conserved protein interaction hotspots. Journal of Molecular Biology. 425: 725-37. PMID 23159558 DOI: 10.1016/J.Jmb.2012.11.012  0.435
2013 Williamson JR. Dynamics of the Ribosome Assembly Line in Living Cells Biophysical Journal. 104: 355a. DOI: 10.1016/J.Bpj.2012.11.1973  0.335
2012 Chen SS, Sperling E, Silverman JM, Davis JH, Williamson JR. Measuring the dynamics of E. coli ribosome biogenesis using pulse-labeling and quantitative mass spectrometry. Molecular Biosystems. 8: 3325-34. PMID 23090316 DOI: 10.1039/C2Mb25310K  0.324
2012 Beuck C, Qu S, Fagg WS, Ares M, Williamson JR. Structural analysis of the quaking homodimerization interface. Journal of Molecular Biology. 423: 766-81. PMID 22982292 DOI: 10.1016/J.Jmb.2012.08.027  0.436
2012 Ridgeway WK, Millar DP, Williamson JR. Quantitation of ten 30S ribosomal assembly intermediates using fluorescence triple correlation spectroscopy. Proceedings of the National Academy of Sciences of the United States of America. 109: 13614-9. PMID 22869699 DOI: 10.1073/Pnas.1204620109  0.387
2012 Campbell ZT, Bhimsaria D, Valley CT, Rodriguez-Martinez JA, Menichelli E, Williamson JR, Ansari AZ, Wickens M. Cooperativity in RNA-protein interactions: global analysis of RNA binding specificity. Cell Reports. 1: 570-81. PMID 22708079 DOI: 10.1016/J.Celrep.2012.04.003  0.325
2012 Campbell ZT, Menichelli E, Friend K, Wu J, Kimble J, Williamson JR, Wickens M. Identification of a conserved interface between PUF and CPEB proteins. The Journal of Biological Chemistry. 287: 18854-62. PMID 22496444 DOI: 10.1074/Jbc.M112.352815  0.384
2012 Kerkow DE, Carmel AB, Menichelli E, Ambrus G, Hills RD, Gerace L, Williamson JR. The structure of the NXF2/NXT1 heterodimeric complex reveals the combined specificity and versatility of the NTF2-like fold. Journal of Molecular Biology. 415: 649-65. PMID 22123199 DOI: 10.1016/J.Jmb.2011.11.027  0.724
2012 Menichelli E, Edgcomb SP, Recht MI, Williamson JR. The structure of Aquifex aeolicus ribosomal protein S8 reveals a unique subdomain that contributes to an extremely tight association with 16S rRNA. Journal of Molecular Biology. 415: 489-502. PMID 22079365 DOI: 10.1016/J.Jmb.2011.10.046  0.429
2012 Greeman CA, Williamson JR. Deletion of Ribosomal Cofactor Rimp Disrupts Late Stage 30S Subunit Assembly Biophysical Journal. 102: 602a. DOI: 10.1016/J.Bpj.2011.11.3279  0.364
2012 Ridgeway WK, Millar DP, Williamson JR. Fluorescence Triple Correlation Spectroscopy Resolves Ten Intermediates Along Different Parallel Ribosome Assembly Pathways Biophysical Journal. 102: 599a-600a. DOI: 10.1016/J.Bpj.2011.11.3265  0.314
2011 Robertson-Anderson RM, Wang J, Edgcomb SP, Carmel AB, Williamson JR, Millar DP. Single-molecule studies reveal that DEAD box protein DDX1 promotes oligomerization of HIV-1 Rev on the Rev response element. Journal of Molecular Biology. 410: 959-71. PMID 21763499 DOI: 10.1016/J.Jmb.2011.04.026  0.341
2011 Shajani Z, Sykes MT, Williamson JR. Assembly of bacterial ribosomes. Annual Review of Biochemistry. 80: 501-26. PMID 21529161 DOI: 10.1146/Annurev-Biochem-062608-160432  0.366
2010 Mulder AM, Yoshioka C, Beck AH, Bunner AE, Milligan RA, Potter CS, Carragher B, Williamson JR. Visualizing ribosome biogenesis: parallel assembly pathways for the 30S subunit. Science (New York, N.Y.). 330: 673-7. PMID 21030658 DOI: 10.1126/Science.1193220  0.733
2010 Sykes MT, Shajani Z, Sperling E, Beck AH, Williamson JR. Quantitative proteomic analysis of ribosome assembly and turnover in vivo. Journal of Molecular Biology. 403: 331-45. PMID 20709079 DOI: 10.1016/J.Jmb.2010.08.005  0.398
2010 Carmel AB, Wu J, Lehmann-Blount KA, Williamson JR. High-affinity consensus binding of target RNAs by the STAR/GSG proteins GLD-1, STAR-2 and Quaking. Bmc Molecular Biology. 11: 48. PMID 20573244 DOI: 10.1186/1471-2199-11-48  0.342
2010 Beuck C, Szymczyna BR, Kerkow DE, Carmel AB, Columbus L, Stanfield RL, Williamson JR. Structure of the GLD-1 homodimerization domain: insights into STAR protein-mediated translational regulation. Structure (London, England : 1993). 18: 377-89. PMID 20223220 DOI: 10.1016/J.Str.2009.12.016  0.711
2010 Bunner AE, Beck AH, Williamson JR. Kinetic cooperativity in Escherichia coli 30S ribosomal subunit reconstitution reveals additional complexity in the assembly landscape. Proceedings of the National Academy of Sciences of the United States of America. 107: 5417-22. PMID 20207951 DOI: 10.1073/Pnas.0912007107  0.765
2010 Bunner AE, Nord S, Wikström PM, Williamson JR. The effect of ribosome assembly cofactors on in vitro 30S subunit reconstitution. Journal of Molecular Biology. 398: 1-7. PMID 20188109 DOI: 10.1016/J.Jmb.2010.02.036  0.759
2009 Bunner AE, Williamson JR. Stable isotope pulse-chase monitored by quantitative mass spectrometry applied to E. coli 30S ribosome assembly kinetics. Methods (San Diego, Calif.). 49: 136-41. PMID 19559090 DOI: 10.1016/J.Ymeth.2009.06.002  0.734
2009 Sykes MT, Williamson JR. A complex assembly landscape for the 30S ribosomal subunit. Annual Review of Biophysics. 38: 197-215. PMID 19416066 DOI: 10.1146/Annurev.Biophys.050708.133615  0.397
2009 El Yacoubi B, Lyons B, Cruz Y, Reddy R, Nordin B, Agnelli F, Williamson JR, Schimmel P, Swairjo MA, de Crécy-Lagard V. The universal YrdC/Sua5 family is required for the formation of threonylcarbamoyladenosine in tRNA. Nucleic Acids Research. 37: 2894-909. PMID 19287007 DOI: 10.1093/Nar/Gkp152  0.354
2009 Ridgeway WK, Shajani Z, Millar DP, Williamson JR. Parallel Pathways in 30S Ribosome Assembly Biophysical Journal. 96: 9a-10a. DOI: 10.1016/J.Bpj.2008.12.945  0.455
2008 Bunner AE, Trauger SA, Siuzdak G, Williamson JR. Quantitative ESI-TOF analysis of macromolecular assembly kinetics. Analytical Chemistry. 80: 9379-86. PMID 19007188 DOI: 10.1021/Ac8020505  0.757
2008 Recht MI, Ryder SP, Williamson JR. Monitoring assembly of ribonucleoprotein complexes by isothermal titration calorimetry. Methods in Molecular Biology (Clifton, N.J.). 488: 117-27. PMID 18982287 DOI: 10.1007/978-1-60327-475-3_8  0.361
2008 Williamson JR. Biophysical studies of bacterial ribosome assembly. Current Opinion in Structural Biology. 18: 299-304. PMID 18541423 DOI: 10.1016/J.Sbi.2008.05.001  0.33
2008 Sperling E, Bunner AE, Sykes MT, Williamson JR. Quantitative analysis of isotope distributions in proteomic mass spectrometry using least-squares Fourier transform convolution. Analytical Chemistry. 80: 4906-17. PMID 18522437 DOI: 10.1021/Ac800080V  0.679
2008 Naidoo N, Harrop SJ, Sobti M, Haynes PA, Szymczyna BR, Williamson JR, Curmi PM, Mabbutt BC. Crystal structure of Lsm3 octamer from Saccharomyces cerevisiae: implications for Lsm ring organisation and recruitment. Journal of Molecular Biology. 377: 1357-71. PMID 18329667 DOI: 10.1016/J.Jmb.2008.01.007  0.329
2008 Edgcomb SP, Aschrafi A, Kompfner E, Williamson JR, Gerace L, Hennig M. Protein structure and oligomerization are important for the formation of export-competent HIV-1 Rev-RRE complexes. Protein Science : a Publication of the Protein Society. 17: 420-30. PMID 18218716 DOI: 10.1110/Ps.073246608  0.381
2008 Kerkow DE, Baca JE, Williamson JR. A novel RNA‐binding domain in the nuclear export factor (NXF) family The Faseb Journal. 22: 211-211. DOI: 10.1096/Fasebj.22.2_Supplement.211  0.677
2007 Kiessling LL, Doudna JA, Johnsson K, Mapp AK, Marletta MA, Seeberger PH, Williamson JR, Wedde SG. A higher degree of difficulty. Acs Chemical Biology. 2: 197-9. PMID 17455890 DOI: 10.1021/Cb7000846  0.334
2006 Davis JH, Tonelli M, Scott LG, Jaeger L, Williamson JR, Butcher SE. Corrigendum to "RNA Helical Packing in Solution: NMR Structure of a 30 kDa GAAA Tetraloop-Receptor Complex" [J. Mol. Biol. 351 (2005) 371-382] (DOI:10.1016/j.jmb.2005.05.069) Journal of Molecular Biology. 360: 742. DOI: 10.1016/J.Jmb.2006.05.039  0.579
2005 Williamson JR. Assembly of the 30S ribosomal subunit. Quarterly Reviews of Biophysics. 38: 397-403. PMID 16934171 DOI: 10.1017/S0033583506004264  0.333
2005 Talkington MW, Siuzdak G, Williamson JR. An assembly landscape for the 30S ribosomal subunit. Nature. 438: 628-32. PMID 16319883 DOI: 10.1038/Nature04261  0.403
2005 Scott LG, Williamson JR. The binding interface between Bacillus stearothermophilus ribosomal protein S15 and its 5'-translational operator mRNA. Journal of Molecular Biology. 351: 280-90. PMID 16005889 DOI: 10.1016/J.Jmb.2005.06.030  0.363
2005 Davis JH, Tonelli M, Scott LG, Jaeger L, Williamson JR, Butcher SE. RNA helical packing in solution: NMR structure of a 30 kDa GAAA tetraloop-receptor complex. Journal of Molecular Biology. 351: 371-82. PMID 16002091 DOI: 10.1016/J.Jmb.2005.05.069  0.607
2005 Lehmann-Blount KA, Williamson JR. Shape-specific nucleotide binding of single-stranded RNA by the GLD-1 STAR domain. Journal of Molecular Biology. 346: 91-104. PMID 15663930 DOI: 10.1016/J.Jmb.2004.11.049  0.391
2004 Recht MI, Williamson JR. RNA tertiary structure and cooperative assembly of a large ribonucleoprotein complex. Journal of Molecular Biology. 344: 395-407. PMID 15522293 DOI: 10.1016/J.Jmb.2004.09.009  0.36
2004 Ryder SP, Williamson JR. Specificity of the STAR/GSG domain protein Qk1: implications for the regulation of myelination. Rna (New York, N.Y.). 10: 1449-58. PMID 15273320 DOI: 10.1261/Rna.7780504  0.337
2004 Chao JA, Williamson JR. Joint X-ray and NMR refinement of the yeast L30e-mRNA complex. Structure (London, England : 1993). 12: 1165-76. PMID 15242593 DOI: 10.1016/J.Str.2004.04.023  0.311
2004 Klostermeier D, Sears P, Wong CH, Millar DP, Williamson JR. A three-fluorophore FRET assay for high-throughput screening of small-molecule inhibitors of ribosome assembly. Nucleic Acids Research. 32: 2707-15. PMID 15148358 DOI: 10.1093/Nar/Gkh588  0.339
2004 Ryder SP, Frater LA, Abramovitz DL, Goodwin EB, Williamson JR. RNA target specificity of the STAR/GSG domain post-transcriptional regulatory protein GLD-1. Nature Structural & Molecular Biology. 11: 20-8. PMID 14718919 DOI: 10.1038/Nsmb706  0.369
2003 Chao JA, Prasad GS, White SA, Stout CD, Williamson JR. Inherent protein structural flexibility at the RNA-binding interface of L30e. Journal of Molecular Biology. 326: 999-1004. PMID 12589748 DOI: 10.1016/S0022-2836(02)01476-6  0.352
2003 Williamson JR. After the ribosome structures: how are the subunits assembled? Rna (New York, N.Y.). 9: 165-7. PMID 12554857 DOI: 10.1261/Rna.2164903  0.405
2002 Maher LJ, Williamson JR. Deconstructing genomics: New developments in the structural biology of nucleic acids Current Opinion in Structural Biology. 12: 281-282. DOI: 10.1016/S0959-440X(02)00322-6  0.306
2001 Scott LG, Williamson JR. Interaction of the Bacillus stearothermophilus ribosomal protein S15 with its 5'-translational operator mRNA. Journal of Molecular Biology. 314: 413-22. PMID 11846555 DOI: 10.1006/Jmbi.2001.5165  0.377
2000 Williamson JR. Induced fit in RNA-protein recognition Nature Structural Biology. 7: 834-837. PMID 11017187 DOI: 10.1038/79575  0.305
2000 Agalarov SC, Prasad GS, Funke PM, Stout CD, Williamson JR. Structure of the S15,S60,S18-rRNA complex: Assembly of the 30S ribosome central domain Science. 288: 107-112. PMID 10753109 DOI: 10.1126/Science.288.5463.107  0.384
1999 Mao H, White SA, Williamson JR. A novel loop-loop recognition motif in the yeast ribosomal protein L30 autoregulatory RNA complex. Nature Structural Biology. 6: 1139-47. PMID 10581556 DOI: 10.1038/70081  0.333
1999 Hongyuan M, Williamson JR. Assignment of the L30-mRNA complex using selective isotopic labeling and RNA mutants Nucleic Acids Research. 27: 4059-4070. PMID 10497271 DOI: 10.1093/Nar/27.20.4059  0.319
1998 Batey RT, Williamson JR. Effects of polyvalent cations on the folding of an rRNA three-way junction and binding of ribosomal protein S15. Rna (New York, N.Y.). 4: 984-97. PMID 9701289 DOI: 10.1017/S1355838298980426  0.342
1998 Orr JW, Hagerman PJ, Williamson JR. Protein and Mg2+-induced conformational changes in the S15 binding site of 16 S ribosomal RNA Journal of Molecular Biology. 275: 453-464. PMID 9466923 DOI: 10.1006/Jmbi.1997.1489  0.319
1997 Curtis D, Treiber DK, Tao F, Zamore PD, Williamson JR, Lehmann R. A CCHC metal-binding domain in Nanos is essential for translational regulation. The Embo Journal. 16: 834-43. PMID 9049312 DOI: 10.1093/Emboj/16.4.834  0.386
1996 Batey RT, Williamson JR. Interaction of the Bacillus stearothermophilus ribosomal protein S15 with 16 S rRNA: II. Specificity determinants of RNA-protein recognition. Journal of Molecular Biology. 261: 550-67. PMID 8794876 DOI: 10.1006/Jmbi.1996.0482  0.337
1996 Batey RT, Williamson JR. Interaction of the Bacillus stearothermophilus ribosomal protein S15 with 16 S rRNA: I. Defining the minimal RNA site. Journal of Molecular Biology. 261: 536-49. PMID 8794875 DOI: 10.1006/Jmbi.1996.0481  0.356
1996 Zarrinkar PP, Williamson JR. The kinetic folding pathway of the Tetrahymena ribozyme reveals possible similarities between RNA and protein folding. Nature Structural Biology. 3: 432-8. PMID 8612073 DOI: 10.1038/Nsb0596-432  0.302
1994 Battiste JL, Tan R, Frankel AD, Williamson JR. Binding of an HIV Rev peptide to Rev responsive element RNA induces formation of purine-purine base pairs. Biochemistry. 33: 2741-7. PMID 8130185 DOI: 10.1021/Bi00176A001  0.305
Show low-probability matches.