Jamie Williamson - Related publications

Affiliations: 
Scripps Research Institute, La Jolla, La Jolla, CA, United States 
Area:
Molecular Biology, Biochemistry, Microbiology Biology
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28 most relevant papers in past 60 days:
Year Citation  Score
2022 Danan C, Manickavel S, Hafner M. PAR-CLIP: A Method for Transcriptome-Wide Identification of RNA Binding Protein Interaction Sites. Methods in Molecular Biology (Clifton, N.J.). 2404: 167-188. PMID 34694609 DOI: 10.1007/978-1-0716-1851-6_9   
2022 Mudiyanselage SDD, Wang Y. Fluorescein-Based Electrophoretic Mobility Shift Assay. Methods in Molecular Biology (Clifton, N.J.). 2316: 133-140. PMID 34845691 DOI: 10.1007/978-1-0716-1464-8_12   
2022 Ross CJ, Ulitsky I. Discovering functional motifs in long noncoding RNAs. Wiley Interdisciplinary Reviews. Rna. e1708. PMID 34981665 DOI: 10.1002/wrna.1708   
2022 Henke KB, Miller RM, Knoener RA, Scalf M, Spiniello M, Smith LM. Identifying Protein Interactomes of Target RNAs Using HyPR-MS. Methods in Molecular Biology (Clifton, N.J.). 2404: 219-244. PMID 34694612 DOI: 10.1007/978-1-0716-1851-6_12   
2022 Birot A, Kus K, Priest E, Al Alwash A, Castello A, Mohammed S, Vasiljeva L, Kilchert C. RNA-binding protein Mub1 and the nuclear RNA exosome act to fine-tune environmental stress response. Life Science Alliance. 5. PMID 34848435 DOI: 10.26508/lsa.202101111   
2022 Goh BC, Xiang X, Lescar J, Dedon PC. Crystal structure and functional analysis of mycobacterial erythromycin resistance methyltransferase Erm38 reveals its RNA binding site. The Journal of Biological Chemistry. 101571. PMID 35007529 DOI: 10.1016/j.jbc.2022.101571   
2022 Mukai Y, Horie M, Kojima S, Kawasaki J, Maeda K, Tomonaga K. An endogenous bornavirus-like nucleoprotein in miniopterid bats retains the RNA-binding properties of the original viral protein. Febs Letters. PMID 35043395 DOI: 10.1002/1873-3468.14290   
2022 Niu M, Zou Q, Lin C. CRBPDL: Identification of circRNA-RBP interaction sites using an ensemble neural network approach. Plos Computational Biology. 18: e1009798. PMID 35051187 DOI: 10.1371/journal.pcbi.1009798   
2022 Wang L, Liang Y, Lin R, Xiong Q, Yu P, Ma J, Cheng M, Han H, Wang X, Wang G, Liang F, Pei Z, Chen D, Yuan Q, Jiang YZ, et al. Mettl5 mediated 18S rRNA N6-methyladenosine (mA) modification controls stem cell fate determination and neural function. Genes & Diseases. 9: 268-274. PMID 35005123 DOI: 10.1016/j.gendis.2020.07.004   
2022 Liu R, Yang J, Yao J, Zhao Z, He W, Su N, Zhang Z, Zhang C, Zhang Z, Cai H, Zhu L, Zhao Y, Quan S, Chen X, Yang Y. Optogenetic control of RNA function and metabolism using engineered light-switchable RNA-binding proteins. Nature Biotechnology. PMID 34980910 DOI: 10.1038/s41587-021-01112-1   
2022 Chan CP, Jin DY. Cytoplasmic RNA sensors and their interplay with RNA-binding partners in innate antiviral response: Theme and variations. Rna (New York, N.Y.). PMID 35031583 DOI: 10.1261/rna.079016.121   
2022 Bhattarai DP, Aguilo F. mA RNA Immunoprecipitation Followed by High-Throughput Sequencing to Map N-Methyladenosine. Methods in Molecular Biology (Clifton, N.J.). 2404: 355-362. PMID 34694619 DOI: 10.1007/978-1-0716-1851-6_19   
2022 Fasching N, Petržílek J, Popitsch N, Herzog VA, Ameres SL. Transcriptome-Wide Profiling of RNA Stability. Methods in Molecular Biology (Clifton, N.J.). 2404: 311-330. PMID 34694617 DOI: 10.1007/978-1-0716-1851-6_17   
2022 Smith HN, Ma J, Wang Y. Analysis on RNA Motif-Based RNA Trafficking in Plants. Methods in Molecular Biology (Clifton, N.J.). 2316: 29-37. PMID 34845682 DOI: 10.1007/978-1-0716-1464-8_3   
2022 Potemkin N, Cawood SMF, Treece J, Guévremont D, Rand CJ, McLean C, Stanton JL, Williams JM. A method for simultaneous detection of small and long RNA biotypes by ribodepleted RNA-Seq. Scientific Reports. 12: 621. PMID 35022475 DOI: 10.1038/s41598-021-04209-4   
2022 Nakatani K. Possibilities and challenges of small molecule organic compounds for the treatment of repeat diseases. Proceedings of the Japan Academy. Series B, Physical and Biological Sciences. 98: 30-48. PMID 35013029 DOI: 10.2183/pjab.98.003   
2022 Mukherjee S, Murata A, Ishida R, Sugai A, Dohno C, Hamada M, Krishna S, Nakatani K. HT-SELEX-based identification of binding pre-miRNA hairpin-motif for small molecules. Molecular Therapy. Nucleic Acids. 27: 165-174. PMID 34976435 DOI: 10.1016/j.omtn.2021.11.021   
2022 Monaco AP. The selfish environment meets the selfish gene: Coevolution and inheritance of RNA and DNA pools: A model for organismal life incorporating coevolution, horizontal transfer, and inheritance of internal and external RNA and DNA pools.: A model for organismal life incorporating coevolution, horizontal transfer, and inheritance of internal and external RNA and DNA pools. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 44: e2100239. PMID 34985131 DOI: 10.1002/bies.202100239   
2022 Schroeder GM, Cavender CE, Blau ME, Jenkins JL, Mathews DH, Wedekind JE. A small RNA that cooperatively senses two stacked metabolites in one pocket for gene control. Nature Communications. 13: 199. PMID 35017488 DOI: 10.1038/s41467-021-27790-8   
2022 Wulf MG, Maguire S, Dai N, Blondel A, Posfai D, Krishnan K, Sun Z, Guan S, Corrêa IR. Chemical capping improves template switching and enhances sequencing of small RNAs. Nucleic Acids Research. 50: e2. PMID 34581823 DOI: 10.1093/nar/gkab861   
2022 Ding D, Zhou L, Giurgiu C, Szostak JW. Kinetic explanations for the sequence biases observed in the nonenzymatic copying of RNA templates. Nucleic Acids Research. 50: 35-45. PMID 34893864 DOI: 10.1093/nar/gkab1202   
2022 Ye F, Haniff HS, Suresh BM, Yang D, Zhang P, Crynen G, Teijaro CN, Yan W, Abegg D, Adibekian A, Shen B, Disney MD. Rational Approach to Identify RNA Targets of Natural Products Enables Identification of Nocathiacin as an Inhibitor of an Oncogenic RNA. Acs Chemical Biology. PMID 35044149 DOI: 10.1021/acschembio.1c00952   
2022 Yan S, Zhu Q, Jain S, Schlick T. Length-dependent motions of SARS-CoV-2 frameshifting RNA pseudoknot and alternative conformations suggest avenues for frameshifting suppression. Research Square. PMID 35018371 DOI: 10.21203/rs.3.rs-1160075/v1   
2022 Xie J, Wen M, Zhang J, Wang Z, Wang M, Qiu Y, Zhao W, Zhu F, Yao M, Rong ZX, Hu W, Pei Q, Sun X, Li J, Mao Z, et al. The roles of RNA helicases in DNA damage repair and tumorigenesis reveal precision therapeutic strategies. Cancer Research. PMID 34987058 DOI: 10.1158/0008-5472.CAN-21-2187   
2022 Li F, Wang A. Transient Expression-Mediated Gene Silencing in Plants and Suppression of Gene Silencing with Viral Suppressors. Methods in Molecular Biology (Clifton, N.J.). 2400: 33-41. PMID 34905188 DOI: 10.1007/978-1-0716-1835-6_4   
2022 Mu H, Li H, Liu Y, Wang X, Mei Q, Xiang W. N6-Methyladenosine Modifications in the Female Reproductive System: Roles in Gonad Development and Diseases. International Journal of Biological Sciences. 18: 771-782. PMID 35002524 DOI: 10.7150/ijbs.66218   
2022 Keller A, Gröger L, Tschernig T, Solomon J, Laham O, Schaum N, Wagner V, Kern F, Schmartz GP, Li Y, Borcherding A, Meier C, Wyss-Coray T, Meese E, Fehlmann T, et al. miRNATissueAtlas2: an update to the human miRNA tissue atlas. Nucleic Acids Research. 50: D211-D221. PMID 34570238 DOI: 10.1093/nar/gkab808   
2022 Abdelhamid RF, Ogawa K, Beck G, Ikenaka K, Takeuchi E, Yasumizu Y, Jinno J, Kimura Y, Baba K, Nagai Y, Okada Y, Saito Y, Murayama S, Mochizuki H, Nagano S. piRNA/PIWI Protein Complex as a Potential Biomarker in Sporadic Amyotrophic Lateral Sclerosis. Molecular Neurobiology. PMID 35015250 DOI: 10.1007/s12035-021-02686-2