Jamie Williamson - Related publications

Scripps Research Institute, La Jolla, La Jolla, CA, United States 
Molecular Biology, Biochemistry, Microbiology Biology
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Chen C, Ulbrich MH. Zinc Finger-Mediated Labeling Reveals the Stoichiometry of Membrane Proteins. Acs Nano. PMID 32208669 DOI: 10.1021/acsnano.9b08865   
2020 Dougherty SE, Maduka AO, Inada T, Silva GM. Expanding Role of Ubiquitin in Translational Control. International Journal of Molecular Sciences. 21. PMID 32050486 DOI: 10.3390/ijms21031151   
2020 Dhankher A, Hernandez ME, Howard HC, Champion JA. Characterization and Control of Dynamic Rearrangement in a Self-Assembled Antibody Carrier. Biomacromolecules. PMID 32134251 DOI: 10.1021/acs.biomac.9b01712   
2020 Qiu J, Bernhofer M, Heinzinger M, Kemper S, Norambuena T, Melo F, Rost B. ProNA2020 predicts protein-DNA, protein-RNA and protein-protein binding proteins and residues from sequence. Journal of Molecular Biology. PMID 32142788 DOI: 10.1016/j.jmb.2020.02.026   
2020 Taggart JC, Zauber H, Selbach M, Li GW, McShane E. Keeping the Proportions of Protein Complex Components in Check. Cell Systems. 10: 125-132. PMID 32105631 DOI: 10.1016/j.cels.2020.01.004   
2020 Cannon KA, Nguyen VN, Morgan C, Yeates TO. Design and Characterization of an Icosahedral Protein Cage Formed by a Double-Fusion Protein Containing Three Distinct Symmetry Elements. Acs Synthetic Biology. PMID 32050070 DOI: 10.1021/acssynbio.9b00392   
2020 Schnatz PJ, Brisendine JM, Laing CC, Everson BH, French CA, Molinaro PM, Koder RL. Designing heterotropically activated allosteric conformational switches using supercharging. Proceedings of the National Academy of Sciences of the United States of America. PMID 32098845 DOI: 10.1073/pnas.1916046117   
2020 Han Y, Lin Z, Zhou J, Yun G, Guo R, Richardson JJ, Caruso F. Polyphenol-Mediated Assembly of Proteins for Engineering Functional Materials. Angewandte Chemie (International Ed. in English). PMID 32115863 DOI: 10.1002/anie.202002089   
2020 Makepeace KAT, Mohammed Y, Rudashevskaya EL, Petrotchenko EV, Voegtle FN, Meisinger C, Sickmann A, Borchers CH. Improving identification of in-organello protein-protein interactions using an affinity-enrichable, isotopically-coded, and mass spectrometry-cleavable chemical crosslinker. Molecular & Cellular Proteomics : McP. PMID 32051233 DOI: 10.1074/mcp.RA119.001839   
2020 Zhao Y, Kaltashov IA. Evaluation of top-down mass spectrometry and ion-mobility spectroscopy as a means of mapping protein-binding motifs within heparin chains. The Analyst. PMID 32150181 DOI: 10.1039/d0an00097c   
2020 O'Day DH, Taylor RJ, Myre MA. Calmodulin and Calmodulin Binding Proteins in : A Primer. International Journal of Molecular Sciences. 21. PMID 32054133 DOI: 10.3390/ijms21041210   
2020 Chen P, Zhuo Y, Tian S, Zhang T, Zhai G, Fan E, Ma Z, Zhang Y, Zhang K. An integrated approach for combinatorial readout of dual histone modifications by epigenetic tandem domains. Analytical Chemistry. PMID 32243745 DOI: 10.1021/acs.analchem.9b05394   
2020 Yang Z, Wang J, Yang J, Qi Z, He J. Recognizing proteins with binding function in Elymus nutans based on machine learning methods. Combinatorial Chemistry & High Throughput Screening. PMID 32223731 DOI: 10.2174/1386207323666200330120154   
2020 Yang Y, He M, Wei T, Sun J, Wu S, Gao T, Guo Z. Photo-affinity pulling down of low-affinity binding proteins mediated by post-translational modifications. Analytica Chimica Acta. 1107: 164-171. PMID 32200891 DOI: 10.1016/j.aca.2020.02.016   
2020 Sharma M, Aswal VK, Kumar V, Chidambaram R. Small-angle neutron scattering studies suggest the mechanism of BinAB protein internalization. Iucrj. 7: 166-172. PMID 32148845 DOI: 10.1107/S2052252519017159   
2020 Hong J, Wu H, Zhang R, He M, Xu W. The Coupling of Taylor Dispersion Analysis and Mass Spectrometry to Differentiate Protein Conformations. Analytical Chemistry. PMID 32186358 DOI: 10.1021/acs.analchem.9b05745   
2020 Dwivedi-Agnihotri H, Srivastava A, Shukla AK. Reversible biotinylation of purified proteins for measuring protein-protein interactions. Methods in Enzymology. 633: 281-294. PMID 32046851 DOI: 10.1016/bs.mie.2019.11.008   
2020 Bickers SC, Sayewich JS, Kanelis V. Intrinsically disordered regions regulate the activities of ATP binding cassette transporters. Biochimica Et Biophysica Acta. Biomembranes. 183202. PMID 31972165 DOI: 10.1016/j.bbamem.2020.183202   
2020 Wu Z, Liao Q, Liu B. idenPC-MIIP: identify protein complexes from weighted PPI networks using mutual important interacting partner relation. Briefings in Bioinformatics. PMID 32065215 DOI: 10.1093/bib/bbaa016   
2020 Mateus A, Kurzawa N, Becher I, Sridharan S, Helm D, Stein F, Typas A, Savitski MM. Thermal proteome profiling for interrogating protein interactions. Molecular Systems Biology. 16: e9232. PMID 32133759 DOI: 10.15252/msb.20199232   
2020 Xu Q, Dunbrack RL. ProtCID: a data resource for structural information on protein interactions. Nature Communications. 11: 711. PMID 32024829 DOI: 10.1038/s41467-020-14301-4   
2020 Portillo F, Vázquez J, Pajares MA. Protein-protein interactions involving enzymes of the mammalian methionine and homocysteine metabolism. Biochimie. PMID 32105812 DOI: 10.1016/j.biochi.2020.02.015   
2020 Zárraga-Granados G, Muciño-Hernández G, Sánchez-Carbente MR, Villamizar-Gálvez W, Peñas-Rincón A, Arredondo C, Andrés ME, Wood C, Covarrubias L, Castro-Obregón S. The nuclear receptor NR4A1 is regulated by SUMO modification to induce autophagic cell death. Plos One. 15: e0222072. PMID 32210435 DOI: 10.1371/journal.pone.0222072   
2020 Han PF, Che XD, Li HZ, Gao YY, Wei XC, Li PC. Annexin A1 involved in the regulation of inflammation and cell signaling pathways. Chinese Journal of Traumatology = Zhonghua Chuang Shang Za Zhi. PMID 32201231 DOI: 10.1016/j.cjtee.2020.02.002   
2020 Mohanty S. Aggregation and coacervation with Monte Carlo simulations. Progress in Molecular Biology and Translational Science. 170: 505-520. PMID 32145952 DOI: 10.1016/bs.pmbts.2019.12.005   
2020 Bhardwaj VK, Purohit R. A new insight into protein-protein interactions and the effect of conformational alterations in PCNA. International Journal of Biological Macromolecules. 148: 999-1009. PMID 31981667 DOI: 10.1016/j.ijbiomac.2020.01.212   
2020 Kramarski L, Arbely E. Translational read-through promotes aggregation and shapes stop codon identity. Nucleic Acids Research. PMID 32128584 DOI: 10.1093/nar/gkaa136   
2020 Gonzalez-Lozano MA, Koopmans F, Sullivan PF, Protze J, Krause G, Verhage M, Li KW, Liu F, Smit AB. Stitching the synapse: Cross-linking mass spectrometry into resolving synaptic protein interactions. Science Advances. 6: eaax5783. PMID 32128395 DOI: 10.1126/sciadv.aax5783   
2020 Kosol S, Contreras-Martos S, Piai A, Varadi M, Lazar T, Bekesi A, Lebrun P, Felli IC, Pierattelli R, Tompa P. Interaction between the scaffold proteins CBP by IQGAP1 provides an interface between gene expression and cytoskeletal activity. Scientific Reports. 10: 5753. PMID 32238831 DOI: 10.1038/s41598-020-62069-w   
2020 Zhao B, Zhuang J, Xu M, Liu T, Limpikirati P, Thayumanavan S, Vachet RW. Covalent Labeling with an α, β Unsaturated Carbonyl Scaffold for Studying Protein Structure and Interactions by Mass Spectrometry. Analytical Chemistry. PMID 32250591 DOI: 10.1021/acs.analchem.0c00463   
2020 Varasteh Moradi S, Gagoski D, Mureev S, Walden P, McMahon KA, Parton RG, Johnston WA, Alexandrov K. Mapping Interactions among Cell-Free Expressed Zika Virus Proteins. Journal of Proteome Research. PMID 32081002 DOI: 10.1021/acs.jproteome.9b00771   
2020 Woloschuk RM, Reed PMM, McDonald S, Uppalapati M, Woolley GA. Yeast Two Hybrid Screening of Photo-Switchable Protein-Protein Interaction Libraries. Journal of Molecular Biology. PMID 32198111 DOI: 10.1016/j.jmb.2020.03.011   
2020 Harrison ET, Wang YC, Carter L, Castner DG. Characterizing protein G B1 orientation and its effect on immunoglobulin G antibody binding using XPS, ToF-SIMS, and quartz crystal microbalance with dissipation monitoring. Biointerphases. 15: 021002. PMID 32168986 DOI: 10.1116/1.5142560   
2020 Dhar A, Ahmed I, Mallick S, Roy S. A Peptide-PNA Hybrid Beacon for Sensitive Detection of Protein Biomarkers in Biological Fluids. Chembiochem : a European Journal of Chemical Biology. PMID 32187425 DOI: 10.1002/cbic.202000097   
2020 Chen Z, Kibler RD, Hunt A, Busch F, Pearl J, Jia M, VanAernum ZL, Wicky BIM, Dods G, Liao H, Wilken MS, Ciarlo C, Green S, El-Samad H, Stamatoyannopoulos J, et al. De novo design of protein logic gates. Science (New York, N.Y.). 368: 78-84. PMID 32241946 DOI: 10.1126/science.aay2790   
2020 Xie S, Du Y, Zhang Y, Wang Z, Zhang D, He L, Qiu L, Jiang J, Tan W. Aptamer-based optical manipulation of protein subcellular localization in cells. Nature Communications. 11: 1347. PMID 32165631 DOI: 10.1038/s41467-020-15113-2   
2020 Xie J, Lai L. Protein topology and allostery. Current Opinion in Structural Biology. 62: 158-165. PMID 32066080 DOI: 10.1016/j.sbi.2020.01.011   
2020 Umlauf BJ, Shusta EV. Site-Directed Modification of Yeast-Produced Proteins Using Expressed Protein Ligation. Methods in Molecular Biology (Clifton, N.J.). 2133: 221-233. PMID 32144670 DOI: 10.1007/978-1-0716-0434-2_11   
2020 Huangfu J, Kim HS, Xu K, Ning X, Qin L, Li J, Li C. Omics Analysis Reveals the Mechanism of Enhanced Recombinant Protein Production Under Simulated Microgravity. Frontiers in Bioengineering and Biotechnology. 8: 30. PMID 32154223 DOI: 10.3389/fbioe.2020.00030   
2020 Harper CS, White AJ, Lackner LL. The multifunctional nature of mitochondrial contact site proteins. Current Opinion in Cell Biology. 65: 58-65. PMID 32208350 DOI: 10.1016/j.ceb.2020.02.010   
2020 Bausewein T, Naveed H, Liang J, Nussberger S. The structure of the TOM core complex in the mitochondrial outer membrane. Biological Chemistry. PMID 32142473 DOI: 10.1515/hsz-2020-0104   
2020 Zhao B, Tsai YC, Jin B, Wang B, Wang Y, Zhou H, Carpenter T, Weissman AM, Yin J. Protein Engineering in the Ubiquitin System: Tools for Discovery and Beyond. Pharmacological Reviews. 72: 380-413. PMID 32107274 DOI: 10.1124/pr.118.015651   
2020 Deng A, Zhang H, Wang W, Zhang J, Fan D, Chen P, Wang B. Developing Computational Model to Predict Protein-Protein Interaction Sites Based on the XGBoost Algorithm. International Journal of Molecular Sciences. 21. PMID 32218345 DOI: 10.3390/ijms21072274   
2020 Shao X, Zhang H, Yang Z, Zhu L, Cai Z. Quantitative profiling of protein-derived electrophilic cofactors in bacterial cells with a hydrazine-derived probe. Analytical Chemistry. PMID 32093472 DOI: 10.1021/acs.analchem.9b05607   
2020 Jia C, Grima R. Small protein number effects in stochastic models of autoregulated bursty gene expression. The Journal of Chemical Physics. 152: 084115. PMID 32113345 DOI: 10.1063/1.5144578   
2020 Nickerson JL, Doucette AA. Rapid and quantitative protein precipitation for proteome analysis by mass spectrometry. Journal of Proteome Research. PMID 32195589 DOI: 10.1021/acs.jproteome.9b00867   
2020 Correnti CE, Hallinan JP, Doyle LA, Ruff RO, Jaeger-Ruckstuhl CA, Xu Y, Shen BW, Qu A, Polkinghorn C, Friend DJ, Bandaranayake AD, Riddell SR, Kaiser BK, Stoddard BL, Bradley P. Engineering and functionalization of large circular tandem repeat protein nanoparticles. Nature Structural & Molecular Biology. PMID 32203491 DOI: 10.1038/s41594-020-0397-5   
2020 Tosstorff A, Peters GHJ, Winter G. Study of the interaction between a novel, protein stabilizing dipeptide and Interferon-alpha-2a by construction of a Markov State Model from Molecular Dynamics simulations. European Journal of Pharmaceutics and Biopharmaceutics : Official Journal of Arbeitsgemeinschaft Fur Pharmazeutische Verfahrenstechnik E.V. PMID 32035237 DOI: 10.1016/j.ejpb.2020.01.020   
2020 Zou Q, Chang R, Yan X. Self-assembling proteins for design of anticancer nanodrugs. Chemistry, An Asian Journal. PMID 32147947 DOI: 10.1002/asia.202000135   
2020 Korendovych IV, DeGrado WF. protein design, a retrospective. Quarterly Reviews of Biophysics. 53: e3. PMID 32041676 DOI: 10.1017/S0033583519000131