| Year |
Citation |
Score |
| 2023 |
Kim T, Hearn CJ, Mays J, Velez-Irizarry D, Reddy SM, Spatz SJ, Cheng HH, Dunn JR. Phenotypic Characterization of Recombinant Marek's Disease Virus in Live Birds Validates Polymorphisms Associated with Virulence. Viruses. 15. PMID 38005939 DOI: 10.3390/v15112263 |
0.321 |
|
| 2022 |
Steep A, Hildebrandt E, Xu H, Hearn C, Frishman D, Niikura M, Dunn JR, Kim T, Conrad SJ, Muir WM, Cheng HH. Identification and Validation of Ikaros () as a Cancer Driver Gene for Marek's Disease Virus-Induced Lymphomas. Microorganisms. 10. PMID 35208856 DOI: 10.3390/microorganisms10020401 |
0.603 |
|
| 2021 |
Hoencamp C, Dudchenko O, Elbatsh AMO, Brahmachari S, Raaijmakers JA, van Schaik T, Sedeño Cacciatore Á, Contessoto VG, van Heesbeen RGHP, van den Broek B, Mhaskar AN, Teunissen H, St Hilaire BG, Weisz D, Omer AD, ... ... Cheng HH, et al. 3D genomics across the tree of life reveals condensin II as a determinant of architecture type. Science (New York, N.Y.). 372: 984-989. PMID 34045355 DOI: 10.1126/science.abe2218 |
0.55 |
|
| 2020 |
Bai H, He Y, Ding Y, Chu Q, Lian L, Heifetz EM, Yang N, Cheng HH, Zhang H, Chen J, Song J. Genome-wide characterization of copy number variations in the host genome in genetic resistance to Marek's disease using next generation sequencing. Bmc Genetics. 21: 77. PMID 32677890 DOI: 10.1186/S12863-020-00884-W |
0.426 |
|
| 2020 |
Bailey RI, Cheng HH, Chase-Topping M, Mays JK, Anacleto O, Dunn JR, Doeschl-Wilson A. Pathogen transmission from vaccinated hosts can cause dose-dependent reduction in virulence. Plos Biology. 18: e3000619. PMID 32134914 DOI: 10.1371/Journal.Pbio.3000619 |
0.333 |
|
| 2020 |
Umthong S, Cheng H, Dunn J. Abstract B89: Determining the underlying protective mechanisms of bivalent Marek’s disease vaccine to prevent tumor induction Cancer Immunology Research. 8. DOI: 10.1158/2326-6074.Tumimm18-B89 |
0.342 |
|
| 2019 |
Umthong S, Dunn JR, Cheng HH. Towards a mechanistic understanding of the synergistic response induced by bivalent Marek's disease vaccines to prevent lymphomas. Vaccine. PMID 31515142 DOI: 10.1016/J.Vaccine.2019.09.003 |
0.356 |
|
| 2019 |
Dunn JR, Black Pyrkosz A, Steep A, Cheng HH. Identification of Marek's disease virus genes associated with virulence of US strains. The Journal of General Virology. PMID 31184569 DOI: 10.1099/Jgv.0.001288 |
0.454 |
|
| 2019 |
Rexroad C, Vallet J, Matukumalli LK, Reecy J, Bickhart D, Blackburn H, Boggess M, Cheng H, Clutter A, Cockett N, Ernst C, Fulton JE, Liu J, Lunney J, Neibergs H, et al. Genome to Phenome: Improving Animal Health, Production, and Well-Being - A New USDA Blueprint for Animal Genome Research 2018-2027. Frontiers in Genetics. 10: 327. PMID 31156693 DOI: 10.3389/Fgene.2019.00327 |
0.312 |
|
| 2018 |
McPherson MC, Cheng HH, Smith JM, Delany ME. Vaccination and Host Marek's Disease-Resistance Genotype Significantly Reduce Oncogenic Gallid alphaherpesvirus 2 Telomere Integration in Host Birds. Cytogenetic and Genome Research. PMID 30572327 DOI: 10.1159/000495174 |
0.422 |
|
| 2018 |
Kern C, Wang Y, Chitwood J, Korf I, Delany M, Cheng H, Medrano JF, Van Eenennaam AL, Ernst C, Ross P, Zhou H. Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species. Bmc Genomics. 19: 684. PMID 30227846 DOI: 10.1186/S12864-018-5037-7 |
0.307 |
|
| 2018 |
Xu L, He Y, Ding Y, Liu GE, Zhang H, Cheng HH, Taylor RL, Song J. Genetic assessment of inbred chicken lines indicates genomic signatures of resistance to Marek's disease. Journal of Animal Science and Biotechnology. 9: 65. PMID 30221000 DOI: 10.1186/S40104-018-0281-X |
0.381 |
|
| 2018 |
Webb AE, Youngworth IA, Kaya M, Gitter CL, O'Hare EA, May B, Cheng HH, Delany ME. Narrowing the wingless-2 mutation to a 227 kb candidate region on chicken chromosome 12. Poultry Science. PMID 29562287 DOI: 10.3382/Ps/Pey073 |
0.408 |
|
| 2017 |
Dunn JR, Reddy SM, Niikura M, Nair V, Fulton JE, Cheng HH. Evaluation and Identification of Marek's Disease Virus BAC Clones as Standardized Reagents for Research. Avian Diseases. 61: 107-114. PMID 28301231 DOI: 10.1637/0005-2086-61.1.107 |
0.404 |
|
| 2017 |
Tai SS, Hearn C, Umthong S, Agafitei O, Cheng HH, Dunn JR, Niikura M. Expression of Marek's Disease Virus Oncoprotein Meq During Infection in the Natural Host. Virology. 503: 103-113. PMID 28160668 DOI: 10.1016/J.Virol.2017.01.011 |
0.363 |
|
| 2017 |
Teague KD, Graham LE, Dunn JR, Cheng HH, Anthony N, Latorre JD, Menconi A, Wolfenden RE, Wolfenden AD, Mahaffey BD, Baxter M, Hernandez-Velasco X, Merino-Guzman R, Bielke LR, Hargis BM, et al. In ovo evaluation of FloraMax®-B11 on Marek´s disease HVT vaccine protective efficacy, hatchability, microbiota composition, morphometric analysis, and Salmonella enteritidis infection in broiler chickens. Poultry Science. PMID 28160004 DOI: 10.3382/Ps/Pew494 |
0.312 |
|
| 2016 |
Warren WC, Hillier LW, Tomlinson C, Minx P, Kremitzki M, Graves T, Markovic C, Bouk N, Pruitt KD, Thibaud-Nissen F, Schneider V, Mansour TA, Brown CT, Zimin A, Hawken R, ... ... Cheng HH, et al. A New Chicken Genome Assembly Provides Insight into Avian Genome Structure. G3 (Bethesda, Md.). PMID 27852011 DOI: 10.1534/G3.116.035923 |
0.401 |
|
| 2016 |
McPherson MC, Cheng HH, Delany ME. Marek's disease herpesvirus vaccines integrate into chicken host chromosomes yet lack a virus-host phenotype associated with oncogenic transformation. Vaccine. PMID 27720297 DOI: 10.1016/J.Vaccine.2016.09.051 |
0.408 |
|
| 2016 |
Perumbakkam S, Hunt HD, Cheng HH. Differences In CD8αα And Cecal Microbiome Community During Proliferation And Late Cytolytic Phases Of Marek's Disease Virus (MDV) Infection Are Associated With Genetic Resistance To Marek's Disease. Fems Microbiology Ecology. PMID 27604255 DOI: 10.1093/Femsec/Fiw188 |
0.381 |
|
| 2016 |
Kaya M, Preeyanon L, Dodgson JB, Cheng HH. Validation of Alternative Transcript Splicing in Chicken Lines that Differ in Genetic Resistance to Marek's Disease. Animal Biotechnology. 27: 238-44. PMID 27565867 DOI: 10.1080/10495398.2016.1178139 |
0.386 |
|
| 2016 |
Tuggle CK, Giuffra E, White SN, Clarke L, Zhou H, Ross PJ, Acloque H, Reecy JM, Archibald A, Bellone RR, Boichard M, Chamberlain A, Cheng H, Crooijmans RP, Delany ME, et al. GO-FAANG meeting: a Gathering On Functional Annotation of Animal Genomes. Animal Genetics. PMID 27453069 DOI: 10.1111/Age.12466 |
0.301 |
|
| 2016 |
Tai SS, Holz C, Engstrom MD, Cheng HH, Maes RK. In vitro Characterization of Felid Herpesvirus 1 (FHV-1) Mutants Generated by Recombineering in a Recombinant BAC Vector. Virus Research. PMID 27157860 DOI: 10.1016/J.Virusres.2016.05.001 |
0.313 |
|
| 2016 |
Steep A, Xu H, Zhang Y, Pyrkosz AB, Delany ME, Frishman D, Cheng HH. P6013 Identifying driver mutations for Marek’s disease lymphomas in chicken using integrated genomic screens Journal of Animal Science. 94: 154-155. DOI: 10.2527/Jas2016.94Supplement4154A |
0.347 |
|
| 2015 |
Yan Y, Yang N, Cheng HH, Song J, Qu L. Genome-wide identification of copy number variations between two chicken lines that differ in genetic resistance to Marek's disease. Bmc Genomics. 16: 843. PMID 26492869 DOI: 10.1186/S12864-015-2080-5 |
0.435 |
|
| 2015 |
Cheng HH, Perumbakkam S, Pyrkosz AB, Dunn JR, Legarra A, Muir WM. Fine mapping of QTL and genomic prediction using allele-specific expression SNPs demonstrates that the complex trait of genetic resistance to Marek's disease is predominantly determined by transcriptional regulation. Bmc Genomics. 16: 816. PMID 26481588 DOI: 10.1186/S12864-015-2016-0 |
0.482 |
|
| 2015 |
Hildebrandt E, Dunn JR, Cheng HH. The mut UL5-I682R marek's disease virus with a single nucleotide mutation within the helicase-primase subunit gene not only reduces virulence but also provides partial vaccinal protection against marek's disease Avian Diseases. 59: 94-97. PMID 26292541 DOI: 10.1637/10929-090314-Reg |
0.647 |
|
| 2015 |
Schmid M, Smith J, Burt DW, Aken BL, Antin PB, Archibald AL, Ashwell C, Blackshear PJ, Boschiero C, Brown CT, Burgess SC, Cheng HH, Chow W, Coble DJ, Cooksey A, et al. Third Report on Chicken Genes and Chromosomes 2015. Prepared by. Cytogenetic and Genome Research. 145: 78-179. PMID 26282327 DOI: 10.1159/000430927 |
0.4 |
|
| 2015 |
Hildebrandt E, Dunn J, Cheng HH. Addition of a UL5 helicase-primase subunit point mutation eliminates bursal-thymic atrophy of Marek's disease virus ∆Meq recombinant virus but reduces vaccinal protection. Avian Pathology : Journal of the W.V.P.A. 1-20. PMID 25968878 DOI: 10.1080/03079457.2015.1041366 |
0.621 |
|
| 2015 |
Andersson L, Archibald AL, Bottema CD, Brauning R, Burgess SC, Burt DW, Casas E, Cheng HH, Clarke L, Couldrey C, Dalrymple BP, Elsik CG, Foissac S, Giuffra E, Groenen MA, et al. Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project. Genome Biology. 16: 57. PMID 25854118 DOI: 10.1186/S13059-015-0622-4 |
0.325 |
|
| 2015 |
Hildebrandt E, Dunn JR, Cheng HH. Characterizing in vivo stability and potential interactions of a UL5 helicase-primase mutation previously shown to reduce virulence and in vivo replication of Marek's disease virus. Virus Research. 203: 1-3. PMID 25828576 DOI: 10.1016/J.Virusres.2015.03.011 |
0.616 |
|
| 2015 |
Zhang X, Misztal I, Heidaritabar M, Bastiaansen JW, Borg R, Okimoto R, Sapp RL, Wing T, Hawken RR, Lourenco DA, Vitezica ZG, Cheng HH, Muir WM. Prior genetic architecture impacting genomic regions under selection: An example using genomic selection in two poultry breeds Livestock Science. 171: 1-11. DOI: 10.1016/J.Livsci.2014.11.003 |
0.336 |
|
| 2014 |
Kim DK, Lillehoj HS, Jang SI, Lee SH, Hong YH, Cheng HH. Transcriptional profiles of host-pathogen responses to necrotic enteritis and differential regulation of immune genes in two inbreed chicken lines showing disparate disease susceptibility. Plos One. 9: e114960. PMID 25504150 DOI: 10.1371/Journal.Pone.0114960 |
0.385 |
|
| 2014 |
Robinson CM, Cheng HH, Delany ME. Temporal kinetics of Marek's disease herpesvirus: integration occurs early after infection in both B and T cells. Cytogenetic and Genome Research. 144: 142-54. PMID 25402709 DOI: 10.1159/000368379 |
0.369 |
|
| 2014 |
Heidaritabar M, Vereijken A, Muir WM, Meuwissen THE, Cheng H, Megens HJWC, Groenen M, Bastiaansen JWM. Systematic differences in the response of genetic variation to pedigree and genome-based selection methods. Heredity. 113: 503-513. PMID 25074573 DOI: 10.1038/Hdy.2014.55 |
0.362 |
|
| 2014 |
Perumbakkam S, Hunt HD, Cheng HH. Marek's disease virus influences the core gut microbiome of the chicken during the early and late phases of viral replication. Fems Microbiology Ecology. 90: 300-12. PMID 25065611 DOI: 10.1111/1574-6941.12392 |
0.329 |
|
| 2014 |
Chang CF, Schock EN, O'Hare EA, Dodgson J, Cheng HH, Muir WM, Edelmann RE, Delany ME, Brugmann SA. The cellular and molecular etiology of the craniofacial defects in the avian ciliopathic mutant talpid2. Development (Cambridge, England). 141: 3003-12. PMID 25053433 DOI: 10.1242/Dev.105924 |
0.379 |
|
| 2014 |
Lee MO, Yang E, Morisson M, Vignal A, Huang YZ, Cheng HH, Muir WM, Lamont SJ, Lillehoj HS, Lee SH, Womack JE. Mapping and genotypic analysis of the NK-lysin gene in chicken. Genetics, Selection, Evolution : Gse. 46: 43. PMID 25001618 DOI: 10.1186/1297-9686-46-43 |
0.384 |
|
| 2014 |
Hildebrandt E, Dunn JR, Perumbakkam S, Niikura M, Cheng HH. Characterizing the molecular basis of attenuation of Marek's disease virus via in vitro serial passage identifies de novo mutations in the helicase-primase subunit gene UL5 and other candidates associated with reduced virulence. Journal of Virology. 88: 6232-42. PMID 24648463 DOI: 10.1128/Jvi.03869-13 |
0.677 |
|
| 2014 |
Haunshi S, Cheng HH. Differential expression of Toll-like receptor pathway genes in chicken embryo fibroblasts from chickens resistant and susceptible to Marek's disease. Poultry Science. 93: 550-5. PMID 24604847 DOI: 10.3382/Ps.2013-03597 |
0.342 |
|
| 2014 |
Hildebrandt E, Dunn JR, Niikura M, Cheng HH. Mutations within ICP4 acquired during in vitro attenuation do not alter virulence of recombinant Marek's disease viruses in vivo Virology Reports. 5: 10-18. DOI: 10.1016/J.Virep.2014.11.002 |
0.628 |
|
| 2013 |
Cheng HH, Kaiser P, Lamont SJ. Integrated genomic approaches to enhance genetic resistance in chickens. Annual Review of Animal Biosciences. 1: 239-60. PMID 25387019 DOI: 10.1146/Annurev-Animal-031412-103701 |
0.428 |
|
| 2013 |
Subramaniam S, Preeyanon L, Cheng HH. Transcriptional profiling of mEq-dependent genes in Marek's disease resistant and susceptible inbred chicken lines. Plos One. 8: e78171. PMID 24205146 DOI: 10.1371/Journal.Pone.0078171 |
0.621 |
|
| 2013 |
Crooijmans RP, Fife MS, Fitzgerald TW, Strickland S, Cheng HH, Kaiser P, Redon R, Groenen MA. Large scale variation in DNA copy number in chicken breeds. Bmc Genomics. 14: 398. PMID 23763846 DOI: 10.1186/1471-2164-14-398 |
0.381 |
|
| 2013 |
Subramaniam S, Johnston J, Preeyanon L, Brown CT, Kung HJ, Cheng HH. Integrated analyses of genome-wide DNA occupancy and expression profiling identify key genes and pathways involved in cellular transformation by a Marek's disease virus oncoprotein, Meq. Journal of Virology. 87: 9016-29. PMID 23740999 DOI: 10.1128/Jvi.01163-13 |
0.561 |
|
| 2013 |
Mao W, Kim T, Cheng HH. Visualization of Marek's disease virus in vitro using enhanced green fluorescent protein fused with US10. Virus Genes. 47: 181-3. PMID 23703623 DOI: 10.1007/S11262-013-0920-4 |
0.552 |
|
| 2013 |
Perumbakkam S, Muir WM, Black-Pyrkosz A, Okimoto R, Cheng HH. Comparison and contrast of genes and biological pathways responding to Marek's disease virus infection using allele-specific expression and differential expression in broiler and layer chickens. Bmc Genomics. 14: 64. PMID 23363372 DOI: 10.1186/1471-2164-14-64 |
0.438 |
|
| 2012 |
Kumar S, Kunec D, Buza JJ, Chiang HI, Zhou H, Subramaniam S, Pendarvis K, Cheng HH, Burgess SC. Nuclear Factor kappa B is central to Marek's disease herpesvirus induced neoplastic transformation of CD30 expressing lymphocytes in-vivo. Bmc Systems Biology. 6: 123. PMID 22979947 DOI: 10.1186/1752-0509-6-123 |
0.492 |
|
| 2012 |
Cheng HH, MacEachern S, Subramaniam S, Muir WM. Chicks and single-nucleotide polymorphisms: An entŕe into identifying genes conferring disease resistance in chicken Animal Production Science. 52: 151-156. DOI: 10.1071/An11099 |
0.637 |
|
| 2011 |
Maceachern S, Muir WM, Crosby SD, Cheng HH. Genome-Wide Identification and Quantification of cis- and trans-Regulated Genes Responding to Marek's Disease Virus Infection via Analysis of Allele-Specific Expression. Frontiers in Genetics. 2: 113. PMID 22303407 DOI: 10.3389/Fgene.2011.00113 |
0.465 |
|
| 2011 |
Luo J, Yu Y, Zhang H, Tian F, Chang S, Cheng HH, Song J. Down-regulation of promoter methylation level of CD4 gene after MDV infection in MD-susceptible chicken line. Bmc Proceedings. 5: S7. PMID 21645322 DOI: 10.1186/1753-6561-5-S4-S7 |
0.34 |
|
| 2011 |
Maceachern S, Muir WM, Crosby S, Cheng HH. Genome-wide identification of allele-specific expression (ASE) in response to Marek's disease virus infection using next generation sequencing. Bmc Proceedings. 5: S14. PMID 21645293 DOI: 10.1186/1753-6561-5-S4-S14 |
0.468 |
|
| 2011 |
Groenen MA, Megens HJ, Zare Y, Warren WC, Hillier LW, Crooijmans RP, Vereijken A, Okimoto R, Muir WM, Cheng HH. The development and characterization of a 60K SNP chip for chicken. Bmc Genomics. 12: 274. PMID 21627800 DOI: 10.1186/1471-2164-12-274 |
0.378 |
|
| 2011 |
Meydan H, Yildiz MA, Dodgson JB, Cheng HH. Allele-specific expression analysis reveals CD79B has a cis-acting regulatory element that responds to Marek's disease virus infection in chickens. Poultry Science. 90: 1206-11. PMID 21597060 DOI: 10.3382/Ps.2010-01295 |
0.445 |
|
| 2011 |
Dodgson JB, Delany ME, Cheng HH. Poultry genome sequences: progress and outstanding challenges. Cytogenetic and Genome Research. 134: 19-26. PMID 21335957 DOI: 10.1159/000324413 |
0.372 |
|
| 2011 |
Robb EA, Gitter CL, Cheng HH, Delany ME. Chromosomal mapping and candidate gene discovery of chicken developmental mutants and genome-wide variation analysis of MHC congenics. The Journal of Heredity. 102: 141-56. PMID 21273214 DOI: 10.1093/Jhered/Esq122 |
0.445 |
|
| 2011 |
Niikura M, Kim T, Silva RF, Dodgson J, Cheng HH. Virulent Marek's disease virus generated from infectious bacterial artificial chromosome clones with complete DNA sequence and the implication of viral genetic homogeneity in pathogenesis. The Journal of General Virology. 92: 598-607. PMID 21123546 DOI: 10.1099/Vir.0.026864-0 |
0.466 |
|
| 2010 |
Robinson CM, Hunt HD, Cheng HH, Delany ME. Chromosomal integration of an avian oncogenic herpesvirus reveals telomeric preferences and evidence for lymphoma clonality. Herpesviridae. 1: 5. PMID 21429236 DOI: 10.1186/2042-4280-1-5 |
0.337 |
|
| 2010 |
Silva RF, Dunn JR, Cheng HH, Niikura M. A MEQ-deleted Marek's disease virus cloned as a bacterial artificial chromosome is a highly efficacious vaccine. Avian Diseases. 54: 862-9. PMID 20608531 DOI: 10.1637/9048-090409-Reg.1 |
0.436 |
|
| 2010 |
Tai SH, Niikura M, Cheng HH, Kruger JM, Wise AG, Maes RK. Complete genomic sequence and an infectious BAC clone of feline herpesvirus-1 (FHV-1). Virology. 401: 215-27. PMID 20304455 DOI: 10.1016/J.Virol.2010.02.021 |
0.397 |
|
| 2010 |
Kim T, Hunt HD, Cheng HH. Marek's disease viruses lacking either R-LORF10 or LORF4 have altered virulence in chickens. Virus Genes. 40: 410-20. PMID 20229182 DOI: 10.1007/S11262-010-0469-4 |
0.387 |
|
| 2010 |
Mao W, Hunt HD, Cheng HH. Cloning and functional characterization of chicken stem cell antigen 2. Developmental and Comparative Immunology. 34: 360-8. PMID 19945479 DOI: 10.1016/J.Dci.2009.11.008 |
0.511 |
|
| 2010 |
Robb EA, Cheng HH, Delany ME. Chromosomal regions associated with developmental mutations in congenic inbred lines of chicken Developmental Biology. 344: 493. DOI: 10.1016/J.Ydbio.2010.05.437 |
0.322 |
|
| 2009 |
Megens HJ, Crooijmans RP, Bastiaansen JW, Kerstens HH, Coster A, Jalving R, Vereijken A, Silva P, Muir WM, Cheng HH, Hanotte O, Groenen MA. Comparison of linkage disequilibrium and haplotype diversity on macro- and microchromosomes in chicken. Bmc Genetics. 10: 86. PMID 20021697 DOI: 10.1186/1471-2156-10-86 |
0.347 |
|
| 2009 |
Heifetz EM, Fulton JE, O'Sullivan NP, Arthur JA, Cheng H, Wang J, Soller M, Dekkers J. Mapping QTL affecting resistance to Marek's disease in an F6 advanced intercross population of commercial layer chickens. Bmc Genomics. 10: 20. PMID 19144166 DOI: 10.1186/1471-2164-10-20 |
0.396 |
|
| 2009 |
Groenen MAM, Wahlberg P, Foglio M, Cheng HH, Megens HJ, Crooijmans RPMA, Besnier F, Lathrop M, Muir WM, Wong GKS, Gut I, Andersson L. A high-density SNP-based linkage map of the chicken genome reveals sequence features correlated with recombination rate Genome Research. 19: 510-519. PMID 19088305 DOI: 10.1101/Gr.086538.108 |
0.37 |
|
| 2009 |
Shalom A, Darvasi A, Barendse W, Cheng H, Soller M. Single-parent segregant pools for allocation of markers to a specified chromosomal region in outcrossing species. Animal Genetics. 27: 9-17. PMID 8624049 DOI: 10.1111/J.1365-2052.1996.Tb01171.X |
0.308 |
|
| 2009 |
Levin I, Cheng HH, Baxter-Jones C, Hillel J. Turkey microsatellite DNA loci amplified by chicken-specific primers Animal Genetics. 26: 107-110. DOI: 10.1111/J.1365-2052.1995.Tb02642.X |
0.366 |
|
| 2008 |
Muir WM, Wong GK, Zhang Y, Wang J, Groenen MA, Crooijmans RP, Megens HJ, Zhang H, Okimoto R, Vereijken A, Jungerius A, Albers GA, Lawley CT, Delany ME, MacEachern S, ... Cheng HH, et al. Genome-wide assessment of worldwide chicken SNP genetic diversity indicates significant absence of rare alleles in commercial breeds. Proceedings of the National Academy of Sciences of the United States of America. 105: 17312-7. PMID 18981413 DOI: 10.1073/Pnas.0806569105 |
0.364 |
|
| 2008 |
Cheng H, Niikura M, Kim T, Mao W, MacLea KS, Hunt H, Dodgson J, Burnside J, Morgan R, Ouyang M, Lamont S, Dekkers J, Fulton J, Soller M, Muir W. Using integrative genomics to elucidate genetic resistance to Marek's disease in chickens. Developments in Biologicals. 132: 365-72. PMID 18817328 DOI: 10.1159/000317187 |
0.637 |
|
| 2008 |
Mao W, Niikura M, Silva RF, Cheng HH. Quantitative evaluation of viral fitness due to a single nucleotide polymorphism in the Marek's disease virus UL41 gene via an in vitro competition assay. Journal of Virological Methods. 148: 125-31. PMID 18082901 DOI: 10.1016/J.Jviromet.2007.10.024 |
0.629 |
|
| 2008 |
Muir WM, Wong GK, Zhang Y, Wang J, Groenen MAM, Crooijmans RPMA, Megens HJ, Zhang HM, McKay JC, McLeod S, Okimoto R, Fulton JE, Settar P, O'Sullivan NP, Vereijken A, ... ... Cheng HH, et al. Review of the initial validation and characterization of a 3K chicken SNP array World's Poultry Science Journal. 64: 219-225. DOI: 10.1017/S0043933908000019 |
0.392 |
|
| 2007 |
Cogburn LA, Porter TE, Duclos MJ, Simon J, Burgess SC, Zhu JJ, Cheng HH, Dodgson JB, Burnside J. Functional genomics of the chicken--a model organism. Poultry Science. 86: 2059-94. PMID 17878436 DOI: 10.1093/Ps/86.10.2059 |
0.389 |
|
| 2007 |
Cheng HH, Zhang Y, Muir WM. Evidence for widespread epistatic interactions influencing Marek's disease virus viremia levels in chicken. Cytogenetic and Genome Research. 117: 313-8. PMID 17675873 DOI: 10.1159/000103193 |
0.478 |
|
| 2007 |
Zhang HM, Bacon LD, Heidari M, Muir WM, Groenen MA, Zhang Y, Wong GK, Fulton JE, O'Sullivan NP, Albers GA, Vereijken AL, Rattink AP, Okimoto R, McKay JC, McLeod S, ... Cheng HH, et al. Genetic variation at the tumour virus B locus in commercial and laboratory chicken populations assessed by a medium-throughput or a high-throughput assay. Avian Pathology : Journal of the W.V.P.A. 36: 283-91. PMID 17620174 DOI: 10.1080/03079450701449248 |
0.316 |
|
| 2007 |
Granevitze Z, Blum S, Cheng H, Vignal A, Morisson M, Ben-Ari G, David L, Feldman MW, Weigend S, Hillel J. Female-specific DNA sequences in the chicken genome. The Journal of Heredity. 98: 238-42. PMID 17395599 DOI: 10.1093/Jhered/Esm010 |
0.346 |
|
| 2007 |
Niikura M, Kim T, Hunt HD, Burnside J, Morgan RW, Dodgson JB, Cheng HH. Marek's disease virus up-regulates major histocompatibility complex class II cell surface expression in infected cells. Virology. 359: 212-9. PMID 17028059 DOI: 10.1016/J.Virol.2006.09.010 |
0.3 |
|
| 2007 |
MacLea KS, Cheng HH. The Threat of Marek's Disease Virus Is Expanding Microbe Magazine. 2: 238-243. DOI: 10.1128/Microbe.2.238.1 |
0.364 |
|
| 2007 |
Hillel J, Granevitze Z, Twito T, Ben-Avraham D, Blum S, Lavi U, David L, Feldman MW, Cheng H, Weigend S. Molecular markers for the assessment of chicken biodiversity World's Poultry Science Journal. 63: 33-45. DOI: 10.1017/S0043933907001250 |
0.341 |
|
| 2006 |
Atzmon G, Ronin YI, Korol A, Yonash N, Cheng H, Hillel J. QTLs associated with growth traits and abdominal fat weight and their interactions with gender and hatch in commercial meat-type chickens Animal Genetics. 37: 352-358. PMID 16879345 DOI: 10.1111/J.1365-2052.2006.01487.X |
0.304 |
|
| 2006 |
Backström N, Brandström M, Gustafsson L, Qvarnström A, Cheng H, Ellegren H. Genetic mapping in a natural population of collared flycatchers (Ficedula albicollis): conserved synteny but gene order rearrangements on the avian Z chromosome. Genetics. 174: 377-86. PMID 16783008 DOI: 10.1534/Genetics.106.058917 |
0.42 |
|
| 2006 |
Ben-Avraham D, Blum S, Granevitze Z, Weigend S, Cheng H, Hillel J. W-specific microsatellite loci detected by in silico analysis map to chromosome Z of the chicken genome. Animal Genetics. 37: 180-1. PMID 16573536 DOI: 10.1111/J.1365-2052.2006.01420.X |
0.378 |
|
| 2006 |
Niikura M, Dodgson JB, Cheng HH. Stability of Marek's disease virus 132-bp repeats during serial in vitro passages. Archives of Virology. 151: 1431-8. PMID 16489507 DOI: 10.1007/S00705-006-0724-0 |
0.405 |
|
| 2005 |
McElroy JP, Dekkers JC, Fulton JE, O'Sullivan NP, Soller M, Lipkin E, Zhang W, Koehler KJ, Lamont SJ, Cheng HH. Microsatellite markers associated with resistance to Marek's disease in commercial layer chickens. Poultry Science. 84: 1678-88. PMID 16463964 DOI: 10.1093/Ps/84.11.1678 |
0.397 |
|
| 2005 |
Niikura M, Dodgson J, Cheng H. Direct evidence of host genome acquisition by the alphaherpesvirus Marek's disease virus. Archives of Virology. 151: 537-49. PMID 16155725 DOI: 10.1007/S00705-005-0633-7 |
0.448 |
|
| 2005 |
Zhang HM, Bacon LD, Cheng HH, Hunt HD. Development and validation of a PCR-RFLP assay to evaluate TVB haplotypes coding receptors for subgroup B and subgroup E avian leukosis viruses in White Leghorns. Avian Pathology : Journal of the W.V.P.A. 34: 324-31. PMID 16147569 DOI: 10.1080/03079450500179491 |
0.389 |
|
| 2005 |
Hansen C, Yi N, Zhang YM, Xu S, Gavora J, Cheng HH. Identification of QTL for production traits in chickens. Animal Biotechnology. 16: 67-79. PMID 15926264 DOI: 10.1081/Abio-200055016 |
0.369 |
|
| 2005 |
OKUMURA F, SHIMOGIRI T, SHINBO Y, YOSHIZAWA K, KAWABE K, MANNEN H, OKAMOTO S, CHENG HH, MAEDA Y. Linkage mapping of four chicken calpain genes Animal Science Journal. 76: 121-127. DOI: 10.1111/J.1740-0929.2005.00246.X |
0.38 |
|
| 2005 |
Cheng H, Muir WM. The effects of genetic selection for survivability and productivity on chicken physiological homeostasis Worlds Poultry Science Journal. 61: 383-397. DOI: 10.1079/Wps200464 |
0.301 |
|
| 2004 |
Wallis JW, Aerts J, Groenen MA, Crooijmans RP, Layman D, Graves TA, Scheer DE, Kremitzki C, Fedele MJ, Mudd NK, Cardenas M, Higginbotham J, Carter J, McGrane R, Gaige T, ... ... Cheng H, et al. A physical map of the chicken genome. Nature. 432: 761-4. PMID 15592415 DOI: 10.1038/Nature03030 |
0.372 |
|
| 2004 |
Niikura M, Liu HC, Dodgson JB, Cheng HH. A comprehensive screen for chicken proteins that interact with proteins unique to virulent strains of Marek's disease virus. Poultry Science. 83: 1117-23. PMID 15285502 DOI: 10.1093/Ps/83.7.1117 |
0.411 |
|
| 2004 |
Kinoshita K, Shimogiri T, Okamoto S, Yoshizawa K, Mannen H, Ibrahim HR, Cheng HH, Maeda Y. Linkage mapping of chicken ovoinhibitor and ovomucoid genes to chromosome 13. Animal Genetics. 35: 356-8. PMID 15265086 DOI: 10.1111/J.1365-2052.2004.01159.X |
0.355 |
|
| 2004 |
Zhang HM, Cheng HH. Chicken tubby-like protein 1 (TULP1) gene maps to chromosome 26 Animal Genetics. 35: 165-166. PMID 15025594 DOI: 10.1111/J.1365-2052.2004.01107.X |
0.351 |
|
| 2004 |
Zhang HM, Cheng HH. SNP identification and genetic mapping of chicken ephrin type-B receptor 2 gene to linkage group E54 Animal Genetics. 35: 162-163. PMID 15025591 DOI: 10.1111/J.1365-2052.2004.01108.X |
0.351 |
|
| 2003 |
Liu HC, Niikura M, Fulton JE, Cheng HH. Identification of chicken lymphocyte antigen 6 complex, locus E (LY6E, alias SCA2) as a putative Marek's disease resistance gene via a virus-host protein interaction screen Cytogenetic and Genome Research. 102: 304-308. PMID 14970721 DOI: 10.1159/000075767 |
0.419 |
|
| 2003 |
Liu HC, Cheng HH. Genetic mapping of the chicken stem cell antigen 2 (SCA2) gene to chromosome 2 via PCR primer mutagenesis Animal Genetics. 34: 158-160. PMID 12648108 DOI: 10.1046/J.1365-2052.2003.00965_10.X |
0.375 |
|
| 2003 |
Zhu JJ, Lillehoj HS, Allen PC, Van Tassell CP, Sonstegard TS, Cheng HH, Pollock D, Sadjadi M, Min W, Emara MG. Mapping quantitative trait loci associated with resistance to coccidiosis and growth Poultry Science. 82: 9-16. PMID 12580238 DOI: 10.1093/Ps/82.1.9 |
0.4 |
|
| 2003 |
Ambady S, Cheng HH, Ponce de León FA. Development and mapping of microsatellite markers derived from chicken chromosome-specific libraries. Poultry Science. 81: 1644-6. PMID 12455590 DOI: 10.1093/Ps/81.11.1644 |
0.321 |
|
| 2002 |
Lipkin E, Fulton J, Cheng H, Yonash N, Soller M. Quantitative Trait Locus Mapping in Chickens by Selective DNA Pooling with Dinucleotide Microsatellite Markers by Using Purified DNA and Fresh or Frozen Red Blood Cells as Applied to Marker-Assisted Selection Poultry Science. 81: 283-292. PMID 11902402 DOI: 10.1093/Ps/81.3.283 |
0.339 |
|
| 2001 |
Mariani P, Barrow PA, Cheng HH, Groenen MM, Negrini R, Bumstead N. Localization to chicken chromosome 5 of a novel locus determining salmonellosis resistance. Immunogenetics. 53: 786-91. PMID 11862411 DOI: 10.1007/S00251-001-0387-7 |
0.4 |
|
| 2001 |
Liu HC, Cheng HH, Tirunagaru V, Sofer L, Burnside J. A strategy to identify positional candidate genes conferring Marek's disease resistance by integrating DNA microarrays and genetic mapping Animal Genetics. 32: 351-359. PMID 11736805 DOI: 10.1046/J.1365-2052.2001.00798.X |
0.451 |
|
| 2001 |
Knorr C, Cheng HH, Dodgson JB. DNA cloning and sequence analysis of chicken AFLP. Animal Genetics. 32: 156-9. PMID 11493265 DOI: 10.1046/J.1365-2052.2001.00748.X |
0.326 |
|
| 2001 |
Liu HC, Kung HJ, Fulton JE, Morgan RW, Cheng HH. Growth hormone interacts with the Marek's disease virus SORF2 protein and is associated with disease resistance in chicken. Proceedings of the National Academy of Sciences of the United States of America. 98: 9203-8. PMID 11470922 DOI: 10.1038/87186 |
0.447 |
|
| 2001 |
Suchyta SP, Cheng HH, Burnside J, Dodgson JB. Comparative mapping of chicken anchor loci orthologous to genes on human chromosomes 1, 4 and 9. Animal Genetics. 32: 12-8. PMID 11419339 DOI: 10.1046/J.1365-2052.2001.00717.X |
0.426 |
|
| 2001 |
Bacon LD, Hunt HD, Cheng HH. Genetic resistance to Marek's disease. Current Topics in Microbiology and Immunology. 255: 121-41. PMID 11217420 DOI: 10.1007/978-3-642-56863-3_5 |
0.363 |
|
| 2001 |
Zhu JJ, Lillehoj HS, Cheng HH, Pollock D, Sadjadi M, Emara MG. Screening for highly heterozygous chickens in outbred commercial broiler lines to increase detection power for mapping quantitative trait loci. Poultry Science. 80: 6-12. PMID 11214337 DOI: 10.1093/Ps/80.1.6 |
0.36 |
|
| 2001 |
Yonash N, Cheng HH, Hillel J, Heller DE, Cahaner A. DNA microsatellites linked to quantitative trait loci affecting antibody response and survival rate in meat-type chickens. Poultry Science. 80: 22-8. PMID 11214332 DOI: 10.1093/Ps/80.1.22 |
0.392 |
|
| 2000 |
Schmid M, Nanda I, Guttenbach M, Steinlein C, Hoehn M, Schartl M, Haaf T, Weigend S, Fries R, Buerstedde JM, Wimmers K, Burt DW, Smith J, A'Hara S, Law A, ... ... Cheng HH, et al. First report on chicken genes and chromosomes 2000. Cytogenetics and Cell Genetics. 90: 169-218. PMID 11124517 DOI: 10.1159/000056772 |
0.318 |
|
| 2000 |
Bacon LD, Hunt HD, Cheng HH. A review of the development of chicken lines to resolve genes determining resistance to diseases. Poultry Science. 79: 1082-93. PMID 10947175 DOI: 10.1093/Ps/79.8.1082 |
0.428 |
|
| 2000 |
Groenen MA, Cheng HH, Bumstead N, Benkel BF, Briles WE, Burke T, Burt DW, Crittenden LB, Dodgson J, Hillel J, Lamont S, de Leon AP, Soller M, Takahashi H, Vignal A. A consensus linkage map of the chicken genome. Genome Research. 10: 137-47. PMID 10645958 DOI: 10.1101/Gr.10.1.137 |
0.415 |
|
| 1999 |
Yonash N, Bacon LD, Witter RL, Cheng HH. High resolution mapping and identification of new quantitative trait loci (QTL) affecting susceptibility to Marek's disease. Animal Genetics. 30: 126-35. PMID 10376303 DOI: 10.1046/J.1365-2052.1999.00457.X |
0.444 |
|
| 1999 |
Xu S, Yonash N, Vallejo RL, Cheng HH. Mapping quantitative trait loci for binary traits using a heterogeneous residual variance model: an application to Marek's disease susceptibility in chickens. Genetica. 104: 171-8. PMID 10220908 DOI: 10.1023/A:1003522902078 |
0.355 |
|
| 1999 |
Knorr C, Cheng HH, Dodgson JB. Application of AFLP markers to genome mapping in poultry Animal Genetics. 30: 28-35. PMID 10050280 DOI: 10.1046/J.1365-2052.1999.00411.X |
0.376 |
|
| 1998 |
Burt DW, Cheng HH. The Chicken Gene Map. Ilar Journal / National Research Council, Institute of Laboratory Animal Resources. 39: 229-236. PMID 11528082 DOI: 10.1093/Ilar.39.2-3.229 |
0.375 |
|
| 1998 |
Smith EJ, Cheng HH. Mapping chicken genes using preferential amplification of specific alleles Microbial &Amp; Comparative Genomics. 3: 13-20. PMID 11013708 DOI: 10.1089/Omi.1.1998.3.13 |
0.392 |
|
| 1998 |
Fridolfsson AK, Cheng H, Copeland NG, Jenkins NA, Liu HC, Raudsepp T, Woodage T, Chowdhary B, Halverson J, Ellegren H. Evolution of the avian sex chromosomes from an ancestral pair of autosomes. Proceedings of the National Academy of Sciences of the United States of America. 95: 8147-52. PMID 9653155 DOI: 10.1073/Pnas.95.14.8147 |
0.304 |
|
| 1998 |
Groenen MA, Crooijmans RP, Veenendaal A, Cheng HH, Siwek M, van der Poel JJ. A comprehensive microsatellite linkage map of the chicken genome. Genomics. 49: 265-74. PMID 9598314 DOI: 10.1006/Geno.1998.5225 |
0.394 |
|
| 1997 |
Vallejo RL, Pharr GT, Liu HC, Cheng HH, Witter RL, Bacon LD. Non-association between Rfp-Y major histocompatibility complex-like genes and susceptibility to Marek's disease virus-induced tumours in 6(3) x 7(2) F2 intercross chickens. Animal Genetics. 28: 331-7. PMID 9363593 DOI: 10.1111/J.1365-2052.1997.00178.X |
0.405 |
|
| 1997 |
Dodgson JB, Cheng HH, Okimoto R. DNA Marker Technology: A Revolution in Animal Genetics Poultry Science. 76: 1108-1114. PMID 9251136 DOI: 10.1093/Ps/76.8.1108 |
0.392 |
|
| 1997 |
Cheng HH. Mapping the Chicken Genome Poultry Science. 76: 1101-1107. PMID 9251135 DOI: 10.1093/Ps/76.8.1101 |
0.375 |
|
| 1997 |
Okimoto R, Cheng HH, Dodgson JB. Characterization of CR1 repeat random PCR markers for mapping the chicken genome Animal Genetics. 28: 139-145. PMID 9172312 DOI: 10.1111/J.1365-2052.1997.00103.X |
0.371 |
|
| 1997 |
Smith EJ, Lyons LA, Cheng HH, Suchyta SP. Comparative Mapping of the Chicken Genome Using the East Lansing Reference Population Poultry Science. 76: 743-747. PMID 9154628 DOI: 10.1093/Ps/76.5.743 |
0.385 |
|
| 1996 |
Smith EJ, Cheng HH, Vallejo RL. Mapping functional chicken genes: an alternative approach. Poultry Science. 75: 642-7. PMID 8722913 DOI: 10.3382/Ps.0750642 |
0.4 |
|
| 1995 |
Cheng HH, Levin I, Vallejo RL, Khatib H, Dodgson JB, Crittenden LB, Hillel J. Development of a genetic map of the chicken with markers of high utility. Poultry Science. 74: 1855-74. PMID 8614694 DOI: 10.3382/Ps.0741855 |
0.39 |
|
| 1994 |
Cheng HH, Crittenden LB. Microsatellite markers for genetic mapping in the chicken Poultry Science. 73: 539-546. PMID 8202433 DOI: 10.3382/Ps.0730539 |
0.374 |
|
| 1994 |
Levin I, Santangelo L, Cheng H, Crittenden LB, Dodgson JB. An autosomal genetic linkage map of the chicken. The Journal of Heredity. 85: 79-85. PMID 7910177 DOI: 10.1093/Oxfordjournals.Jhered.A111427 |
0.395 |
|
| 1989 |
Haggård-Ljungquist E, Barreiro V, Calendar R, Kurnit DM, Cheng H. The P2 phage old gene: sequence, transcription and translational control. Gene. 85: 25-33. PMID 2695400 DOI: 10.1016/0378-1119(89)90460-5 |
0.325 |
|
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